Experiment set13IT038 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.4 -6.5 excinuclease ABC chain C compare
Atu3730 -4.9 -3.4 hypothetical protein compare
Atu1513 -4.3 -4.2 ABC excinuclease subunit A compare
Atu2036 -3.7 -15.8 acetolactate synthase III, large subunit compare
Atu0769 -3.3 -2.2 protoheme IX farnesyltransferase compare
Atu0422 -3.0 -3.9 ABC transporter, membrane spanning protein compare
Atu0039 -2.9 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu2057 -2.8 -3.3 DNA helicase II compare
Atu2728 -2.8 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0537 -2.6 -6.8 histidinol dehydrogenase compare
Atu0331 -2.6 -3.7 sigma-54 modulation protein compare
Atu0679 -2.5 -7.9 ATP phosphoribosyltransferase compare
Atu1030 -2.4 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2439 -2.4 -2.3 hypothetical protein compare
Atu3009 -2.4 -1.2 exopolysaccharide production protein compare
Atu0031 -2.2 -1.8 PTS system, IIA component compare
Atu3707 -2.2 -3.7 phosphoserine aminotransferase compare
Atu3908 -2.1 -11.2 GntR family transcriptional regulator compare
Atu3763 -2.1 -1.4 hypothetical protein compare
Atu4072 -2.1 -2.4 nodulation protein N compare
Atu2001 -2.1 -5.9 excinuclease ABC subunit B compare
Atu0678 -2.1 -7.7 histidyl-tRNA synthetase compare
Atu3706 -2.0 -8.6 D-3-phosphoglycerate dehydrogenase compare
Atu3311 -2.0 -12.5 phosphomannose isomerase compare
Atu1750 -1.9 -6.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu1470 -1.9 -1.3 Camphor resistance protein compare
Atu4616 -1.9 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu2183 -1.9 -7.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4610 -1.9 -10.6 sugar nucleotide epimerase/dehydratase compare
Atu0030 -1.8 -2.4 phosphocarrier protein HPr compare
Atu2125 -1.8 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0043 -1.8 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu0038 -1.8 -5.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4618 -1.8 -10.9 dTDP-rhamnose-3,5-epimerase compare
Atu2790 -1.7 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu3353 -1.7 -9.0 mannose-1-phosphate guanylyltransferase compare
Atu2379 -1.7 -9.4 phosphomannomutase compare
Atu0041 -1.7 -2.2 glutamine amidotransferase compare
Atu4166 -1.7 -2.6 UDP-glucose 4-epimerase compare
Atu4613 -1.7 -10.9 glycosyltransferase compare
Atu0050 -1.7 -5.4 two component response regulator compare
Atu1028 -1.6 -3.1 hypothetical protein compare
Atu1705 -1.6 -4.9 SEC-independent protein translocase protein compare
Atu1588 -1.6 -7.5 homoserine dehydrogenase compare
Atu4217 -1.6 -1.5 TetR family transcriptional regulator compare
Atu4317 -1.6 -3.8 TetR family transcriptional regulator compare
Atu0029 -1.6 -4.2 S-adenosylhomocysteine hydrolase compare
Atu1359 -1.6 -1.4 dnaK deletion suppressor protein compare
Atu3754 -1.6 -5.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4686 -1.5 -3.5 hypothetical protein compare
Atu3755 -1.5 -5.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4617 -1.5 -6.2 dTDP-D-glucose-4,6-dehydratase compare
Atu4614 -1.5 -7.2 glycosyltransferase compare
Atu2832 -1.5 -3.5 tRNA modification GTPase compare
Atu0141 -1.5 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu2718 -1.5 -7.1 homoserine O-succinyltransferase compare
Atu1685 -1.5 -1.5 hypothetical protein compare
Atu1447 -1.5 -1.6 two component sensor kinase compare
Atu8167 -1.5 -7.9 putative transmembrane protein compare
Atu0399 -1.5 -4.8 dihydroorotase compare
Atu2791 -1.4 -7.4 3-isopropylmalate dehydrogenase compare
Atu0086 -1.4 -1.0 ribosome-binding factor A compare
Atu0876 -1.4 -2.0 superoxide dismutase compare
Atu2073 -1.4 -4.4 membrane protein compare
Atu1163 -1.4 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0703 -1.4 -3.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0486 -1.4 -3.9 dihydroorotate dehydrogenase compare
Atu0971 -1.4 -3.0 two component sensor kinase compare
Atu1687 -1.4 -7.8 anthranilate phosphoribosyltransferase compare
Atu4615 -1.4 -7.2 glucose-1-phosphate thymidylyltransferase compare
Atu0647 -1.4 -5.2 phosphoribosylamine--glycine ligase compare
Atu0400 -1.3 -3.4 orotate phosphoribosyltransferase compare
Atu3885 -1.3 -6.6 inositol monophosphatase compare
Atu1099 -1.3 -4.7 hypothetical protein compare
Atu1149 -1.3 -1.2 adenylate cyclase compare
Atu8052 -1.3 -2.4 hypothetical protein compare
Atu2709 -1.3 -8.8 3-isopropylmalate dehydratase, large subunit compare
Atu4144 -1.3 -1.5 hypothetical protein compare
Atu1205 -1.3 -8.6 threonine dehydratase compare
Atu1308 -1.3 -3.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1902 -1.3 -4.8 transketolase compare
Atu5125 -1.3 -5.5 GntR family transcriptional regulator compare
Atu1417 -1.3 -5.3 enoyl-CoA hydratase compare
Atu6098 -1.3 -1.1 transcriptional regulator, HTH family compare
Atu0434 -1.3 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu5160 -1.2 -3.4 transcriptional regulator protein compare
Atu2052 -1.2 -4.2 hypothetical protein compare
Atu1874 -1.2 -2.8 RecA protein compare
Atu1619 -1.2 -3.7 protein-export membrane protein SECG compare
Atu1714 -1.2 -1.8 exonuclease III compare
Atu2650 -1.2 -6.2 glycerol-3-phosphate dehydrogenase compare
Atu0093 -1.2 -3.8 Recombination protein compare
Atu0977 -1.2 -3.7 serine protease DO-like protease compare
Atu1364 -1.2 -4.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1469 -1.1 -2.9 hypothetical protein compare
Atu4608 -1.1 -7.0 hypothetical protein compare
Atu0784 -1.1 -2.0 hypothetical protein compare
Atu2368 -1.1 -1.3 hypothetical protein compare
Atu2722 -1.1 -5.1 porin compare
Atu3469 -1.1 -2.4 phosphoglyceromutase compare
Atu2264 -1.1 -7.5 2-isopropylmalate synthase compare
Atu0017 -1.1 -3.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0953 -1.1 -1.4 hypothetical protein compare
Atu0099 -1.1 -6.6 prephenate dehydratase compare
Atu2207 -1.1 -1.9 two component sensor kinase compare
Atu1688 -1.1 -3.1 indole-3-glycerol-phosphate synthase compare
Atu5501 -1.1 -3.3 hypothetical protein compare
Atu2433 -1.0 -1.4 hypothetical protein compare
Atu1850 -1.0 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0040 -1.0 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1140 -1.0 -3.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2040 -1.0 -3.2 phosphoserine phosphatase compare
Atu1646 -1.0 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0842 -1.0 -1.6 hypothetical protein compare
Atu2289 -1.0 -7.5 anthranilate synthase component I and II compare
Atu2831 -1.0 -3.3 glucose inhibited division protein A compare
Atu1844 -1.0 -2.6 Phosphoribosylformylglycinamidine synthetase compare
Atu2376 -1.0 -1.9 hypothetical protein compare
Atu5540 -1.0 -1.2 hypothetical protein compare
Atu1468 -1.0 -4.7 hypothetical protein compare
Atu4711 -1.0 -4.5 two component sensor kinase compare
Atu1778 -1.0 -6.9 transcription-repair coupling factor compare
Atu0894 -1.0 -2.0 ABC transporter, membrane spanning protein compare
Atu2585 -1.0 -4.2 hypothetical protein compare
Atu0401 -0.9 -4.6 fructokinase compare
Atu4609 -0.9 -7.1 glycosyltransferase compare
Atu1141 -0.9 -2.8 Phosphoribosylglycinamide synthetase compare
Atu2462 -0.9 -1.9 hypothetical protein compare
Atu1021 -0.9 -1.8 outer membrane protein compare
Atu3017 -0.9 -1.1 phosphoglyceromutase compare
Atu6114 -0.9 -2.4 hypothetical protein compare
Atu0660 -0.9 -5.3 hydrolase compare
Atu1647 -0.9 -5.5 ABC transporter, membrane spanning protein compare
Atu1307 -0.9 -3.0 dihydroorotase compare
Atu4346 -0.9 -4.1 hypothetical protein compare
Atu8158 -0.9 -2.2 hypothetical protein compare
Atu1904 -0.9 -3.5 transcriptional regulator compare
Atu1845 -0.9 -2.8 phosphoribosylformylglycinamidine synthase I compare
Atu1075 -0.9 -3.3 amidophosphoribosyltransferase compare
Atu3727 -0.9 -3.1 hypothetical protein compare
Atu4148 -0.9 -3.8 UDP-glucuronic acid epimerase compare
Atu8138 -0.9 -1.6 hypothetical protein compare
Atu1677 -0.9 -3.3 queuine tRNA-ribosyltransferase compare
Atu3609 -0.9 -3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu2237 -0.9 -3.6 cytochrome c1 compare
Atu2554 -0.9 -2.0 lysyl-tRNA synthetase compare
Atu1254 -0.9 -1.6 transcriptional regulator, ArsR family compare
Atu4425 -0.9 -4.6 inosine-uridine preferring nucleoside hydrolase compare
Atu0101 -0.9 -2.3 cytochrome c compare
Atu0354 -0.9 -1.6 ferric uptake regulator compare
Atu8168 -0.9 -2.8 hypothetical protein compare
Atu1327 -0.8 -2.4 NADH-ubiquinone oxidoreductase compare
Atu4274 -0.8 -2.8 hypothetical protein compare
Atu4792 -0.8 -1.8 hypothetical protein compare
Atu0923 -0.8 -3.6 hypothetical protein compare
Atu0421 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu1534 -0.8 -3.7 cytochrome-c oxidase, FixP chain compare
Atu0368 -0.8 -3.7 tRNA pseudouridine synthase I compare
Atu2684 -0.8 -1.1 hypothetical protein compare
Atu2640 -0.8 -2.1 hypothetical protein compare
Atu3712 -0.8 -1.5 hypothetical protein compare
Atu0153 -0.8 -2.8 transcriptional regulator, Fur family compare
Atu0036 -0.8 -2.1 hypothetical protein compare
Atu3219 -0.8 -4.8 dihydroxy-acid dehydratase compare
Atu2464 -0.8 -1.5 formyltetrahydrofolate deformylase compare
Atu0499 -0.8 -4.2 hypothetical protein compare
Atu0346 -0.8 -1.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1810 -0.8 -0.9 hypothetical protein compare
Atu0361 -0.8 -2.1 transcriptional regulator compare
Atu0188 -0.8 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu3394 -0.8 -2.4 iron ABC transporter ATPase compare
Atu0298 -0.8 -3.3 orotidine 5 compare
Atu8036 -0.8 -2.4 protein YBGT-like protein compare
Atu2335 -0.8 -1.6 hypothetical protein compare
Atu0073 -0.7 -4.0 recF-like protein compare
Atu1077 -0.7 -2.3 DNA repair protein compare
Atu3485 -0.7 -4.8 short chain dehydrogenase compare
Atu8087 -0.7 -0.7 putative peptidoglycan binding protein compare
Atu0544 -0.7 -1.8 hypothetical protein compare
Atu0166 -0.7 -2.7 hypothetical protein compare
Atu4277 -0.7 -3.5 LamB/YcsF family protein compare
Atu2484 -0.7 -1.2 hypothetical protein compare
Atu3623 -0.7 -2.9 DnaJ family molecular chaperone compare
Atu2217 -0.7 -3.0 hypothetical protein compare
Atu4505 -0.7 -2.9 LacI family transcriptional regulator compare
Atu2239 -0.7 -2.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1645 -0.7 -4.0 ABC transporter, substrate binding protein compare
Atu2795 -0.7 -3.4 cobalamin biosynthetic protein compare
Atu4149 -0.7 -4.6 UDP-glucose 6-dehydrogenase compare
Atu2555 -0.7 -2.3 L-lysine 2,3-aminomutase compare
Atu1535 -0.7 -1.9 cytochrome c oxidase, FixQ chain compare
Atu1536 -0.7 -2.9 cytochrome C oxidase, FixO chain compare
Atu2017 -0.7 -0.6 hypothetical protein compare
Atu1213 -0.7 -1.6 hypothetical protein compare
Atu2803 -0.7 -2.6 Cobalamin biosynthesis associated protein compare
Atu2522 -0.7 -4.5 agrobacterium chromosomal virulence protein B compare
Atu4477 -0.6 -3.4 TetR family transcriptional regulator compare
Atu0280 -0.6 -1.7 hypothetical protein compare
Atu2577 -0.6 -5.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0976 -0.6 -0.8 cycL protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms