Experiment set13IT036 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.2 -6.1 excinuclease ABC chain C compare
Atu1359 -4.3 -1.8 dnaK deletion suppressor protein compare
Atu1513 -4.3 -2.9 ABC excinuclease subunit A compare
Atu6098 -4.1 -1.7 transcriptional regulator, HTH family compare
Atu4166 -3.6 -3.0 UDP-glucose 4-epimerase compare
Atu0041 -3.3 -2.9 glutamine amidotransferase compare
Atu2036 -3.2 -15.1 acetolactate synthase III, large subunit compare
Atu4217 -3.0 -2.0 TetR family transcriptional regulator compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2057 -2.6 -3.0 DNA helicase II compare
Atu4618 -2.5 -9.8 dTDP-rhamnose-3,5-epimerase compare
Atu0043 -2.5 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0678 -2.5 -7.6 histidyl-tRNA synthetase compare
Atu0679 -2.4 -6.8 ATP phosphoribosyltransferase compare
Atu1219 -2.4 -1.3 hypothetical protein compare
Atu0038 -2.4 -6.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2183 -2.4 -9.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2728 -2.3 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu3311 -2.3 -13.4 phosphomannose isomerase compare
Atu3353 -2.3 -8.7 mannose-1-phosphate guanylyltransferase compare
Atu0399 -2.2 -6.9 dihydroorotase compare
Atu3707 -2.2 -3.5 phosphoserine aminotransferase compare
Atu3706 -2.2 -9.1 D-3-phosphoglycerate dehydrogenase compare
Atu2439 -2.2 -2.0 hypothetical protein compare
Atu1750 -2.1 -4.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu4615 -2.1 -8.6 glucose-1-phosphate thymidylyltransferase compare
Atu4617 -2.1 -7.8 dTDP-D-glucose-4,6-dehydratase compare
Atu2001 -2.1 -6.1 excinuclease ABC subunit B compare
Atu0331 -2.1 -4.1 sigma-54 modulation protein compare
Atu3763 -2.0 -1.3 hypothetical protein compare
Atu1844 -2.0 -2.6 Phosphoribosylformylglycinamidine synthetase compare
Atu2379 -2.0 -8.0 phosphomannomutase compare
Atu2207 -1.9 -4.1 two component sensor kinase compare
Atu0298 -1.9 -5.7 orotidine 5 compare
Atu3908 -1.9 -10.0 GntR family transcriptional regulator compare
Atu0039 -1.9 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu1470 -1.9 -1.5 Camphor resistance protein compare
Atu3730 -1.9 -2.3 hypothetical protein compare
Atu0537 -1.8 -4.6 histidinol dehydrogenase compare
Atu0971 -1.8 -3.2 two component sensor kinase compare
Atu4072 -1.8 -1.9 nodulation protein N compare
Atu4613 -1.8 -10.8 glycosyltransferase compare
Atu4317 -1.8 -2.2 TetR family transcriptional regulator compare
Atu2125 -1.8 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1028 -1.7 -2.7 hypothetical protein compare
Atu0400 -1.7 -4.8 orotate phosphoribosyltransferase compare
Atu0486 -1.7 -5.0 dihydroorotate dehydrogenase compare
Atu4610 -1.7 -8.5 sugar nucleotide epimerase/dehydratase compare
Atu1588 -1.7 -5.8 homoserine dehydrogenase compare
Atu1417 -1.7 -5.8 enoyl-CoA hydratase compare
Atu0184 -1.6 -2.4 glucokinase compare
Atu0031 -1.6 -1.4 PTS system, IIA component compare
Atu3885 -1.6 -7.1 inositol monophosphatase compare
Atu1039 -1.5 -3.7 DNA repair protein RecO compare
Atu2684 -1.5 -1.8 hypothetical protein compare
Atu2791 -1.5 -6.7 3-isopropylmalate dehydrogenase compare
Atu2040 -1.5 -4.6 phosphoserine phosphatase compare
Atu1683 -1.5 -2.1 hypothetical protein compare
Atu0029 -1.4 -4.9 S-adenosylhomocysteine hydrolase compare
Atu4609 -1.4 -8.0 glycosyltransferase compare
Atu1030 -1.4 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1364 -1.4 -5.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1307 -1.4 -4.5 dihydroorotase compare
Atu2790 -1.4 -2.1 3-isopropylmalate dehydratase, small subunit compare
Atu2709 -1.4 -10.4 3-isopropylmalate dehydratase, large subunit compare
Atu0784 -1.4 -2.7 hypothetical protein compare
Atu8138 -1.4 -1.3 hypothetical protein compare
Atu2113 -1.4 -2.9 N-acetylmuramoyl-L-alanine amidase compare
Atu2555 -1.4 -2.9 L-lysine 2,3-aminomutase compare
Atu1446 -1.3 -2.1 two component response regulator compare
Atu1205 -1.3 -7.5 threonine dehydratase compare
Atu0723 -1.3 -1.5 FAD dependent oxidoreductase compare
Atu1308 -1.3 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu1646 -1.3 -4.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2270 -1.3 -1.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu1141 -1.3 -4.4 Phosphoribosylglycinamide synthetase compare
Atu0099 -1.3 -6.4 prephenate dehydratase compare
Atu4614 -1.3 -4.6 glycosyltransferase compare
Atu4608 -1.3 -8.1 hypothetical protein compare
Atu4711 -1.2 -4.9 two component sensor kinase compare
Atu0030 -1.2 -1.7 phosphocarrier protein HPr compare
Atu1140 -1.2 -3.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3754 -1.2 -3.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1810 -1.2 -1.1 hypothetical protein compare
Atu8167 -1.2 -5.9 putative transmembrane protein compare
Atu4346 -1.2 -4.8 hypothetical protein compare
Atu0703 -1.2 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0141 -1.2 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1904 -1.2 -3.3 transcriptional regulator compare
Atu1714 -1.1 -1.6 exonuclease III compare
Atu1902 -1.1 -3.6 transketolase compare
Atu1687 -1.1 -5.9 anthranilate phosphoribosyltransferase compare
Atu3017 -1.1 -1.1 phosphoglyceromutase compare
Atu8032 -1.1 -2.4 hypothetical protein compare
Atu1503 -1.1 -1.2 hypothetical protein compare
Atu2442 -1.1 -1.8 hypothetical protein compare
Atu0189 -1.1 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0687 -1.1 -1.6 hypothetical protein compare
Atu1705 -1.1 -2.9 SEC-independent protein translocase protein compare
Atu0017 -1.1 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0354 -1.1 -1.7 ferric uptake regulator compare
Atu0368 -1.1 -3.6 tRNA pseudouridine synthase I compare
Atu0050 -1.1 -3.7 two component response regulator compare
Atu1688 -1.1 -3.0 indole-3-glycerol-phosphate synthase compare
Atu5125 -1.0 -3.4 GntR family transcriptional regulator compare
Atu0401 -1.0 -5.2 fructokinase compare
Atu0585 -1.0 -3.2 hypothetical protein compare
Atu2554 -1.0 -2.1 lysyl-tRNA synthetase compare
Atu1677 -1.0 -3.5 queuine tRNA-ribosyltransferase compare
Atu0434 -1.0 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2205 -1.0 -3.5 transcriptional regulator, MarR family compare
Atu1647 -1.0 -4.8 ABC transporter, membrane spanning protein compare
Atu2832 -1.0 -2.4 tRNA modification GTPase compare
Atu2718 -1.0 -3.7 homoserine O-succinyltransferase compare
Atu0073 -1.0 -4.5 recF-like protein compare
Atu0647 -1.0 -3.3 phosphoribosylamine--glycine ligase compare
Atu4677 -1.0 -0.9 hypothetical protein compare
Atu0499 -1.0 -5.8 hypothetical protein compare
Atu2264 -1.0 -5.4 2-isopropylmalate synthase compare
Atu2584 -1.0 -2.7 hypothetical protein compare
Atu2052 -0.9 -3.6 hypothetical protein compare
Atu0051 -0.9 -3.4 two component sensor kinase compare
Atu0538 -0.9 -2.6 hypothetical protein compare
Atu2824 -0.9 -3.4 hypothetical protein compare
Atu2433 -0.9 -1.1 hypothetical protein compare
Atu1850 -0.9 -2.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0361 -0.9 -2.4 transcriptional regulator compare
Atu2376 -0.9 -1.8 hypothetical protein compare
Atu2058 -0.9 -3.2 hypothetical protein compare
Atu3755 -0.9 -2.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0340 -0.9 -1.6 SAM dependent methyltransferase compare
Atu0086 -0.9 -0.8 ribosome-binding factor A compare
Atu0977 -0.9 -3.1 serine protease DO-like protease compare
Atu1645 -0.9 -4.2 ABC transporter, substrate binding protein compare
Atu0895 -0.9 -2.2 ABC transporter, substrate binding protein compare
Atu1845 -0.9 -2.2 phosphoribosylformylglycinamidine synthase I compare
Atu1339 -0.9 -1.6 ribonuclease E compare
Atu4685 -0.9 -5.0 LacI family transcriptional regulator compare
Atu2796 -0.9 -3.6 precorrin-4 C11-methyltransferase compare
Atu0966 -0.9 -2.3 hypothetical protein compare
Atu4407 -0.8 -1.4 periplasmic nitrate reductase, NapD protein compare
Atu2800 -0.8 -1.2 precorrin-3B C17-methyltransferase compare
Atu1103 -0.8 -2.0 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2640 -0.8 -3.0 hypothetical protein compare
Atu1778 -0.8 -5.8 transcription-repair coupling factor compare
Atu2591 -0.8 -4.0 glucosyltransferase compare
Atu2267 -0.8 -3.0 hypothetical protein compare
Atu0533 -0.8 -2.2 putative inhibitor of septum formation compare
Atu1853 -0.8 -2.8 hypothetical protein compare
Atu4148 -0.8 -3.1 UDP-glucuronic acid epimerase compare
Atu2289 -0.8 -5.5 anthranilate synthase component I and II compare
Atu4405 -0.8 -2.4 periplasmic nitrate reductase NapE compare
Atu3732 -0.8 -5.0 hemolysin compare
Atu2017 -0.8 -1.0 hypothetical protein compare
Atu3485 -0.8 -4.6 short chain dehydrogenase compare
Atu0205 -0.8 -4.5 methylmalonate-semialdehyde dehydrogenase compare
Atu4773 -0.8 -0.9 two component response regulator compare
Atu1327 -0.8 -1.7 NADH-ubiquinone oxidoreductase compare
Atu1566 -0.8 -1.0 hypothetical protein compare
Atu0976 -0.8 -1.5 cycL protein compare
Atu0093 -0.8 -3.0 Recombination protein compare
Atu2802 -0.8 -2.8 precorrin-8X methylmutase compare
Atu3727 -0.7 -2.8 hypothetical protein compare
Atu0689 -0.7 -5.0 ribosomal large subunit pseudouridine synthase B compare
Atu2582 -0.7 -4.5 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2237 -0.7 -2.3 cytochrome c1 compare
Atu3324 -0.7 -2.2 hypothetical protein compare
Atu3608 -0.7 -2.9 hypothetical protein compare
Atu0344 -0.7 -2.1 hypothetical protein compare
Atu4200 -0.7 -1.2 hypothetical protein compare
Atu4077 -0.7 -3.3 glycogen branching protein compare
Atu2577 -0.7 -5.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2722 -0.7 -3.5 porin compare
Atu5164 -0.7 -0.8 type IV secretion protein AvhB3 compare
Atu0432 -0.7 -3.5 O-succinylhomoserine sulfhydrylase compare
Atu2831 -0.7 -2.5 glucose inhibited division protein A compare
Atu1075 -0.7 -2.1 amidophosphoribosyltransferase compare
Atu4215 -0.7 -2.3 cell division protein compare
Atu3718 -0.7 -4.1 hypothetical protein compare
Atu1592 -0.7 -3.5 hypothetical protein compare
Atu0062 -0.7 -4.3 transcriptional regulator, ROK family compare
Atu2650 -0.7 -4.3 glycerol-3-phosphate dehydrogenase compare
Atu0923 -0.7 -3.0 hypothetical protein compare
Atu1163 -0.7 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0536 -0.7 -2.5 hypothetical protein compare
Atu2349 -0.7 -1.2 hypothetical protein compare
Atu1468 -0.7 -3.0 hypothetical protein compare
Atu2163 -0.7 -0.5 hypothetical protein compare
Atu2809 -0.7 -3.4 cobalamin biosynthesis protein compare
Atu2235 -0.7 -1.2 hypothetical protein compare
Atu4275 -0.7 -3.7 hypothetical protein compare
Atu1019 -0.7 -1.1 hypothetical protein compare
Atu0421 -0.7 -0.8 ABC transporter, membrane spanning protein compare
Atu1577 -0.7 -2.1 ABC transporter, substrate binding protein (amino acid) compare
Atu4176 -0.7 -3.6 hypothetical protein compare
Atu1891 -0.7 -2.0 cobalamin biosynthesis protein compare
Atu2124 -0.7 -3.0 transcriptional regulator, ArsR family compare
Atu3183 -0.7 -0.6 hypothetical protein compare
Atu4173 -0.7 -1.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu2583 -0.6 -4.5 glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms