Experiment set13IT034 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.2 -5.1 excinuclease ABC chain C compare
Atu2125 -4.8 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1513 -3.4 -5.2 ABC excinuclease subunit A compare
Atu6098 -3.3 -1.4 transcriptional regulator, HTH family compare
Atu0031 -3.1 -1.9 PTS system, IIA component compare
Atu4317 -3.1 -3.4 TetR family transcriptional regulator compare
Atu0030 -3.0 -2.6 phosphocarrier protein HPr compare
Atu0041 -3.0 -3.5 glutamine amidotransferase compare
Atu2036 -2.9 -11.7 acetolactate synthase III, large subunit compare
Atu0876 -2.8 -1.8 superoxide dismutase compare
Atu0912 -2.8 -1.6 Na+/H+ antiporter compare
Atu0040 -2.7 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2057 -2.7 -2.6 DNA helicase II compare
Atu1470 -2.6 -1.5 Camphor resistance protein compare
Atu0043 -2.5 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu2183 -2.4 -6.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3706 -2.3 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu2790 -2.3 -1.9 3-isopropylmalate dehydratase, small subunit compare
Atu4617 -2.3 -12.4 dTDP-D-glucose-4,6-dehydratase compare
Atu1364 -2.3 -6.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0086 -2.2 -1.3 ribosome-binding factor A compare
Atu0038 -2.2 -4.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3311 -2.2 -12.3 phosphomannose isomerase compare
Atu3707 -2.1 -3.4 phosphoserine aminotransferase compare
Atu2001 -2.1 -5.6 excinuclease ABC subunit B compare
Atu1327 -2.1 -3.7 NADH-ubiquinone oxidoreductase compare
Atu1354 -2.1 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1874 -2.1 -3.1 RecA protein compare
Atu0184 -2.1 -3.0 glucokinase compare
Atu3469 -2.1 -2.7 phosphoglyceromutase compare
Atu0537 -2.1 -7.4 histidinol dehydrogenase compare
Atu3908 -2.1 -10.5 GntR family transcriptional regulator compare
Atu4616 -2.0 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu1359 -2.0 -1.4 dnaK deletion suppressor protein compare
Atu4072 -1.9 -2.2 nodulation protein N compare
Atu4618 -1.9 -10.2 dTDP-rhamnose-3,5-epimerase compare
Atu4610 -1.9 -10.7 sugar nucleotide epimerase/dehydratase compare
Atu0400 -1.9 -5.0 orotate phosphoribosyltransferase compare
Atu2207 -1.9 -2.9 two component sensor kinase compare
Atu3353 -1.8 -8.1 mannose-1-phosphate guanylyltransferase compare
Atu4614 -1.8 -8.0 glycosyltransferase compare
Atu4615 -1.8 -8.4 glucose-1-phosphate thymidylyltransferase compare
Atu5125 -1.8 -4.0 GntR family transcriptional regulator compare
Atu2684 -1.8 -2.1 hypothetical protein compare
Atu2379 -1.8 -8.8 phosphomannomutase compare
Atu0331 -1.7 -3.2 sigma-54 modulation protein compare
Atu0679 -1.7 -5.1 ATP phosphoribosyltransferase compare
Atu0039 -1.7 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0703 -1.7 -2.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2439 -1.7 -2.0 hypothetical protein compare
Atu1588 -1.6 -5.5 homoserine dehydrogenase compare
Atu4613 -1.6 -9.7 glycosyltransferase compare
Atu4346 -1.6 -4.7 hypothetical protein compare
Atu1030 -1.6 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0678 -1.6 -5.6 histidyl-tRNA synthetase compare
Atu4166 -1.5 -2.2 UDP-glucose 4-epimerase compare
Atu0486 -1.5 -4.4 dihydroorotate dehydrogenase compare
Atu1844 -1.5 -3.2 Phosphoribosylformylglycinamidine synthetase compare
Atu1103 -1.5 -3.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2791 -1.5 -5.2 3-isopropylmalate dehydrogenase compare
Atu3755 -1.5 -4.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu8138 -1.4 -1.8 hypothetical protein compare
Atu0050 -1.4 -4.9 two component response regulator compare
Atu1619 -1.4 -3.6 protein-export membrane protein SECG compare
Atu0784 -1.4 -2.6 hypothetical protein compare
Atu1750 -1.4 -3.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu2709 -1.4 -9.1 3-isopropylmalate dehydratase, large subunit compare
Atu3017 -1.4 -1.7 phosphoglyceromutase compare
Atu3754 -1.4 -5.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -1.4 -3.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1223 -1.4 -1.6 hypothetical protein compare
Atu1683 -1.4 -2.0 hypothetical protein compare
Atu0399 -1.4 -5.2 dihydroorotase compare
Atu2728 -1.4 -3.0 beta (1-->2) glucan export ATP-binding protein compare
Atu2113 -1.3 -3.2 N-acetylmuramoyl-L-alanine amidase compare
Atu0099 -1.3 -7.2 prephenate dehydratase compare
Atu1902 -1.2 -3.7 transketolase compare
Atu4608 -1.2 -8.5 hypothetical protein compare
Atu1705 -1.2 -3.9 SEC-independent protein translocase protein compare
Atu0977 -1.2 -3.9 serine protease DO-like protease compare
Atu4609 -1.2 -8.4 glycosyltransferase compare
Atu0647 -1.2 -5.4 phosphoribosylamine--glycine ligase compare
Atu0422 -1.2 -1.6 ABC transporter, membrane spanning protein compare
Atu0658 -1.2 -7.3 phosphate permease compare
Atu4711 -1.2 -5.8 two component sensor kinase compare
Atu1219 -1.2 -1.2 hypothetical protein compare
Atu0298 -1.2 -4.8 orotidine 5 compare
Atu0017 -1.2 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2163 -1.2 -1.4 hypothetical protein compare
Atu2217 -1.2 -3.4 hypothetical protein compare
Atu3160 -1.2 -3.6 hypothetical protein compare
Atu1687 -1.2 -5.1 anthranilate phosphoribosyltransferase compare
Atu2831 -1.2 -3.5 glucose inhibited division protein A compare
Atu1205 -1.1 -7.7 threonine dehydratase compare
Atu1810 -1.1 -1.1 hypothetical protein compare
Atu1688 -1.1 -4.1 indole-3-glycerol-phosphate synthase compare
Atu1678 -1.1 -4.6 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu4514 -1.1 -3.1 RpiR family transcriptional regulator compare
Atu0769 -1.1 -1.2 protoheme IX farnesyltransferase compare
Atu2824 -1.1 -3.3 hypothetical protein compare
Atu5160 -1.1 -2.9 transcriptional regulator protein compare
Atu1417 -1.1 -5.2 enoyl-CoA hydratase compare
Atu2052 -1.1 -3.9 hypothetical protein compare
Atu8191 -1.1 -1.4 hypothetical protein compare
Atu3739 -1.1 -2.8 phosphoglycerate kinase compare
Atu1307 -1.0 -3.9 dihydroorotase compare
Atu1646 -1.0 -3.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2821 -1.0 -3.3 transcriptional regulator, GntR family compare
Atu0659 -1.0 -4.5 NTP pyrophosphohydrolase, MutT family compare
Atu1904 -1.0 -1.7 transcriptional regulator compare
Atu1039 -1.0 -2.7 DNA repair protein RecO compare
Atu2264 -1.0 -5.9 2-isopropylmalate synthase compare
Atu0434 -1.0 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1075 -1.0 -4.1 amidophosphoribosyltransferase compare
Atu0036 -1.0 -1.7 hypothetical protein compare
Atu8167 -1.0 -5.4 putative transmembrane protein compare
Atu1339 -1.0 -3.0 ribonuclease E compare
Atu1260 -1.0 -1.4 hypothetical protein compare
Atu3485 -1.0 -5.8 short chain dehydrogenase compare
Atu1308 -1.0 -2.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1845 -1.0 -2.1 phosphoribosylformylglycinamidine synthase I compare
Atu0029 -0.9 -3.8 S-adenosylhomocysteine hydrolase compare
Atu4077 -0.9 -5.0 glycogen branching protein compare
Atu1739 -0.9 -2.9 permease compare
Atu3885 -0.9 -3.1 inositol monophosphatase compare
Atu0482 -0.9 -4.6 polysaccharide deacetylase compare
Atu4173 -0.9 -2.0 phosphoenolpyruvate-protein phosphotransferase compare
Atu1542 -0.9 -3.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1445 -0.9 -3.2 two component sensor kinase compare
Atu3712 -0.9 -1.1 hypothetical protein compare
Atu1258 -0.9 -2.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu2832 -0.9 -2.2 tRNA modification GTPase compare
Atu1645 -0.9 -4.3 ABC transporter, substrate binding protein compare
Atu3609 -0.9 -4.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu1141 -0.9 -3.4 Phosphoribosylglycinamide synthetase compare
Atu2289 -0.9 -6.6 anthranilate synthase component I and II compare
Atu1685 -0.9 -1.0 hypothetical protein compare
Atu6189 -0.9 -1.4 protein secretion chaperone compare
Atu3911 -0.9 -2.6 hypothetical protein compare
Atu2718 -0.9 -3.3 homoserine O-succinyltransferase compare
Atu4171 -0.9 -4.7 cold-shock dead-box protein A compare
Atu1647 -0.9 -3.4 ABC transporter, membrane spanning protein compare
Atu0971 -0.9 -2.0 two component sensor kinase compare
Atu0894 -0.8 -1.5 ABC transporter, membrane spanning protein compare
Atu3727 -0.8 -1.8 hypothetical protein compare
Atu2376 -0.8 -1.0 hypothetical protein compare
Atu0346 -0.8 -1.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1468 -0.8 -3.8 hypothetical protein compare
Atu3613 -0.8 -4.3 hypothetical protein compare
Atu2650 -0.8 -5.6 glycerol-3-phosphate dehydrogenase compare
Atu0499 -0.8 -4.8 hypothetical protein compare
Atu0966 -0.8 -1.1 hypothetical protein compare
Atu0051 -0.8 -3.1 two component sensor kinase compare
Atu0421 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu2270 -0.8 -0.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu2620 -0.8 -1.1 hypothetical protein compare
Atu3815 -0.8 -3.4 GntR family transcriptional regulator compare
Atu4541 -0.8 -3.5 carboxymuconolactone decarboxylase compare
Atu5501 -0.8 -1.9 hypothetical protein compare
Atu1110 -0.8 -1.7 cytosol aminopeptidase compare
Atu2237 -0.8 -2.8 cytochrome c1 compare
Atu0640 -0.8 -1.5 hypothetical protein compare
Atu0660 -0.8 -3.5 hydrolase compare
Atu1475 -0.8 -2.2 hypothetical protein compare
Atu3730 -0.8 -1.2 hypothetical protein compare
Atu2464 -0.8 -1.8 formyltetrahydrofolate deformylase compare
Atu2722 -0.8 -3.4 porin compare
Atu3248 -0.8 -4.5 cell division inhibitor compare
Atu3162 -0.8 -4.1 LacI family transcriptional regulator compare
Atu0141 -0.8 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2073 -0.8 -1.7 membrane protein compare
Atu2807 -0.8 -3.6 cob(I)alamin adenosyltransferase compare
Atu4148 -0.8 -4.4 UDP-glucuronic acid epimerase compare
Atu1566 -0.8 -0.8 hypothetical protein compare
Atu0401 -0.8 -2.8 fructokinase compare
Atu0062 -0.8 -4.0 transcriptional regulator, ROK family compare
Atu1447 -0.8 -1.2 two component sensor kinase compare
Atu2640 -0.8 -2.7 hypothetical protein compare
Atu4149 -0.8 -5.3 UDP-glucose 6-dehydrogenase compare
Atu1714 -0.7 -1.2 exonuclease III compare
Atu3963 -0.7 -3.4 GntR family transcriptional regulator compare
Atu1838 -0.7 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu1031 -0.7 -2.2 hypothetical protein compare
Atu1573 -0.7 -1.0 hypothetical protein compare
Atu2555 -0.7 -1.5 L-lysine 2,3-aminomutase compare
Atu0895 -0.7 -1.8 ABC transporter, substrate binding protein compare
Atu3598 -0.7 -0.8 thiol:disulfide interchange protein compare
Atu4685 -0.7 -3.5 LacI family transcriptional regulator compare
Atu4371 -0.7 -4.0 sugar ABC transporter permease compare
Atu1457 -0.7 -1.7 hypothetical protein compare
Atu5517 -0.7 -2.4 hypothetical protein compare
Atu2522 -0.7 -4.8 agrobacterium chromosomal virulence protein B compare
Atu4383 -0.7 -2.6 hypothetical protein compare
Atu2040 -0.7 -2.2 phosphoserine phosphatase compare
Atu1677 -0.7 -2.4 queuine tRNA-ribosyltransferase compare
Atu4773 -0.7 -1.4 two component response regulator compare
Atu0135 -0.7 -2.0 uracil phosphoribosyltransferase compare
Atu2802 -0.7 -2.0 precorrin-8X methylmutase compare
Atu1446 -0.7 -1.1 two component response regulator compare
Atu1850 -0.7 -1.6 phosphoribosylformylglycinamidine synthetase II compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms