Experiment set13IT033 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.3 -5.2 excinuclease ABC chain C compare
Atu2125 -4.8 -3.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2036 -4.3 -14.9 acetolactate synthase III, large subunit compare
Atu1359 -4.1 -1.7 dnaK deletion suppressor protein compare
Atu1513 -4.1 -2.8 ABC excinuclease subunit A compare
Atu1030 -3.8 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3707 -3.6 -3.5 phosphoserine aminotransferase compare
Atu2057 -3.3 -2.3 DNA helicase II compare
Atu0039 -3.2 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0769 -3.0 -2.0 protoheme IX farnesyltransferase compare
Atu0537 -2.8 -6.9 histidinol dehydrogenase compare
Atu1750 -2.7 -5.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu4317 -2.6 -4.3 TetR family transcriptional regulator compare
Atu2183 -2.6 -10.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4166 -2.6 -2.5 UDP-glucose 4-epimerase compare
Atu3908 -2.6 -11.9 GntR family transcriptional regulator compare
Atu1470 -2.5 -1.4 Camphor resistance protein compare
Atu2790 -2.5 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu0038 -2.5 -5.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3706 -2.4 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu3311 -2.4 -13.5 phosphomannose isomerase compare
Atu3598 -2.4 -2.1 thiol:disulfide interchange protein compare
Atu1810 -2.3 -1.2 hypothetical protein compare
Atu4614 -2.2 -6.7 glycosyltransferase compare
Atu2728 -2.2 -3.6 beta (1-->2) glucan export ATP-binding protein compare
Atu1588 -2.2 -8.6 homoserine dehydrogenase compare
Atu4618 -2.1 -9.9 dTDP-rhamnose-3,5-epimerase compare
Atu3353 -2.1 -9.8 mannose-1-phosphate guanylyltransferase compare
Atu4617 -2.1 -10.8 dTDP-D-glucose-4,6-dehydratase compare
Atu0041 -2.0 -2.5 glutamine amidotransferase compare
Atu0331 -2.0 -3.1 sigma-54 modulation protein compare
Atu0678 -2.0 -4.0 histidyl-tRNA synthetase compare
Atu0422 -2.0 -2.1 ABC transporter, membrane spanning protein compare
Atu1417 -2.0 -7.3 enoyl-CoA hydratase compare
Atu4615 -1.9 -8.8 glucose-1-phosphate thymidylyltransferase compare
Atu3763 -1.9 -1.3 hypothetical protein compare
Atu2001 -1.9 -5.2 excinuclease ABC subunit B compare
Atu4616 -1.9 -1.8 dTDP-4-dehydrorhamnose reductase compare
Atu4613 -1.9 -10.8 glycosyltransferase compare
Atu0486 -1.8 -3.1 dihydroorotate dehydrogenase compare
Atu2791 -1.7 -6.8 3-isopropylmalate dehydrogenase compare
Atu0043 -1.7 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu3730 -1.7 -2.2 hypothetical protein compare
Atu0679 -1.7 -5.2 ATP phosphoribosyltransferase compare
Atu2207 -1.7 -3.8 two component sensor kinase compare
Atu0971 -1.7 -2.9 two component sensor kinase compare
Atu1683 -1.7 -2.2 hypothetical protein compare
Atu2040 -1.6 -4.3 phosphoserine phosphatase compare
Atu1644 -1.6 -2.7 hypothetical protein compare
Atu3885 -1.6 -6.7 inositol monophosphatase compare
Atu4610 -1.6 -7.2 sugar nucleotide epimerase/dehydratase compare
Atu2464 -1.6 -2.5 formyltetrahydrofolate deformylase compare
Atu2379 -1.6 -7.0 phosphomannomutase compare
Atu2163 -1.5 -1.7 hypothetical protein compare
Atu0400 -1.5 -4.2 orotate phosphoribosyltransferase compare
Atu0030 -1.5 -1.9 phosphocarrier protein HPr compare
Atu4346 -1.5 -5.6 hypothetical protein compare
Atu1327 -1.4 -2.9 NADH-ubiquinone oxidoreductase compare
Atu2709 -1.4 -8.3 3-isopropylmalate dehydratase, large subunit compare
Atu4608 -1.4 -9.4 hypothetical protein compare
Atu0976 -1.4 -2.3 cycL protein compare
Atu1705 -1.4 -4.9 SEC-independent protein translocase protein compare
Atu1339 -1.4 -3.6 ribonuclease E compare
Atu0895 -1.4 -3.0 ABC transporter, substrate binding protein compare
Atu1902 -1.4 -3.4 transketolase compare
Atu1844 -1.4 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2554 -1.4 -2.2 lysyl-tRNA synthetase compare
Atu1687 -1.4 -6.4 anthranilate phosphoribosyltransferase compare
Atu1140 -1.3 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu8018 -1.3 -1.2 hypothetical protein compare
Atu0434 -1.3 -2.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1028 -1.3 -1.7 hypothetical protein compare
Atu1952 -1.3 -1.5 hypothetical protein compare
Atu8167 -1.3 -6.7 putative transmembrane protein compare
Atu4711 -1.3 -7.0 two component sensor kinase compare
Atu4773 -1.3 -1.9 two component response regulator compare
Atu0029 -1.3 -4.8 S-adenosylhomocysteine hydrolase compare
Atu1031 -1.3 -2.7 hypothetical protein compare
Atu3754 -1.3 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0340 -1.2 -2.1 SAM dependent methyltransferase compare
Atu2718 -1.2 -5.5 homoserine O-succinyltransferase compare
Atu0399 -1.2 -4.3 dihydroorotase compare
Atu2831 -1.2 -4.2 glucose inhibited division protein A compare
Atu5517 -1.2 -4.1 hypothetical protein compare
Atu3739 -1.2 -2.8 phosphoglycerate kinase compare
Atu2264 -1.2 -6.5 2-isopropylmalate synthase compare
Atu1688 -1.2 -4.9 indole-3-glycerol-phosphate synthase compare
Atu4149 -1.2 -7.7 UDP-glucose 6-dehydrogenase compare
Atu5125 -1.2 -3.9 GntR family transcriptional regulator compare
Atu1308 -1.2 -3.5 aspartate carbamoyl transferase catalytic subunit compare
Atu0977 -1.1 -3.4 serine protease DO-like protease compare
Atu2289 -1.1 -7.5 anthranilate synthase component I and II compare
Atu1619 -1.1 -2.4 protein-export membrane protein SECG compare
Atu2368 -1.1 -1.2 hypothetical protein compare
Atu1646 -1.1 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu4609 -1.1 -6.0 glycosyltransferase compare
Atu2585 -1.1 -4.7 hypothetical protein compare
Atu3755 -1.1 -3.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1205 -1.1 -6.5 threonine dehydratase compare
Atu3603 -1.1 -1.9 two component response regulator compare
Atu2439 -1.1 -1.4 hypothetical protein compare
Atu0050 -1.1 -4.0 two component response regulator compare
Atu2083 -1.1 -3.3 DNA repair protein RecN compare
Atu1904 -1.1 -3.2 transcriptional regulator compare
Atu0886 -1.1 -1.2 hypothetical protein compare
Atu2797 -1.0 -1.6 cobalamin biosynthesis protein compare
Atu0298 -1.0 -4.5 orotidine 5 compare
Atu3162 -1.0 -4.9 LacI family transcriptional regulator compare
Atu2582 -1.0 -4.9 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1446 -1.0 -1.1 two component response regulator compare
Atu2239 -1.0 -3.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0687 -1.0 -2.1 hypothetical protein compare
Atu0031 -1.0 -1.0 PTS system, IIA component compare
Atu1077 -1.0 -2.4 DNA repair protein compare
Atu0421 -1.0 -1.1 ABC transporter, membrane spanning protein compare
Atu1364 -1.0 -3.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0375 -1.0 -2.0 small heat shock protein compare
Atu2662 -1.0 -1.2 acetyltransferase compare
Atu3727 -1.0 -3.4 hypothetical protein compare
Atu0093 -1.0 -3.1 Recombination protein compare
Atu0659 -1.0 -4.1 NTP pyrophosphohydrolase, MutT family compare
Atu1778 -1.0 -7.1 transcription-repair coupling factor compare
Atu1254 -1.0 -1.6 transcriptional regulator, ArsR family compare
Atu0099 -1.0 -4.5 prephenate dehydratase compare
Atu2832 -1.0 -2.0 tRNA modification GTPase compare
Atu4148 -0.9 -3.8 UDP-glucuronic acid epimerase compare
Atu0647 -0.9 -3.0 phosphoribosylamine--glycine ligase compare
Atu3219 -0.9 -5.6 dihydroxy-acid dehydratase compare
Atu4040 -0.9 -2.8 hypothetical protein compare
Atu3485 -0.9 -5.9 short chain dehydrogenase compare
Atu2577 -0.9 -6.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3815 -0.9 -3.7 GntR family transcriptional regulator compare
Atu2824 -0.9 -3.2 hypothetical protein compare
Atu2584 -0.9 -3.6 hypothetical protein compare
Atu1874 -0.9 -1.8 RecA protein compare
Atu1075 -0.9 -3.9 amidophosphoribosyltransferase compare
Atu2522 -0.9 -5.6 agrobacterium chromosomal virulence protein B compare
Atu0690 -0.9 -1.7 hypothetical protein compare
Atu1052 -0.9 -2.0 hypothetical protein compare
Atu2821 -0.9 -2.8 transcriptional regulator, GntR family compare
Atu1845 -0.9 -2.4 phosphoribosylformylglycinamidine synthase I compare
Atu0809 -0.9 -1.2 hypothetical protein compare
Atu1175 -0.9 -1.2 hypothetical protein compare
Atu1645 -0.9 -4.7 ABC transporter, substrate binding protein compare
Atu0073 -0.9 -4.1 recF-like protein compare
Atu2555 -0.9 -2.4 L-lysine 2,3-aminomutase compare
Atu0361 -0.9 -1.8 transcriptional regulator compare
Atu0036 -0.9 -2.0 hypothetical protein compare
Atu6189 -0.9 -1.1 protein secretion chaperone compare
Atu0703 -0.9 -1.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu4277 -0.9 -3.7 LamB/YcsF family protein compare
Atu3469 -0.9 -1.9 phosphoglyceromutase compare
Atu2591 -0.8 -3.6 glucosyltransferase compare
Atu8168 -0.8 -2.2 hypothetical protein compare
Atu3017 -0.8 -1.1 phosphoglyceromutase compare
Atu0784 -0.8 -1.8 hypothetical protein compare
Atu8138 -0.8 -0.6 hypothetical protein compare
Atu2583 -0.8 -5.5 glycosyltransferase compare
Atu2376 -0.8 -2.0 hypothetical protein compare
Atu0684 -0.8 -3.3 hypothetical protein compare
Atu1302 -0.8 -2.4 hypothetical protein compare
Atu3248 -0.8 -3.8 cell division inhibitor compare
Atu0051 -0.8 -3.1 two component sensor kinase compare
Atu1495 -0.8 -2.2 hypothetical protein compare
Atu2590 -0.8 -5.7 hypothetical protein compare
Atu2052 -0.8 -2.9 hypothetical protein compare
Atu0499 -0.8 -4.0 hypothetical protein compare
Atu3892 -0.8 -3.2 hypothetical protein compare
Atu2073 -0.8 -2.0 membrane protein compare
Atu1468 -0.8 -3.9 hypothetical protein compare
Atu3712 -0.8 -1.2 hypothetical protein compare
Atu2650 -0.8 -4.5 glycerol-3-phosphate dehydrogenase compare
Atu4077 -0.8 -4.0 glycogen branching protein compare
Atu2378 -0.8 -1.6 hypothetical protein compare
Atu1891 -0.8 -1.5 cobalamin biosynthesis protein compare
Atu0658 -0.8 -4.1 phosphate permease compare
Atu0062 -0.7 -3.2 transcriptional regulator, ROK family compare
Atu0025 -0.7 -1.5 hypothetical protein compare
Atu0149 -0.7 -3.1 enoyl-(acyl-carrier-protein) reductase compare
Atu1647 -0.7 -4.0 ABC transporter, membrane spanning protein compare
Atu5464 -0.7 -4.5 IclR family transcriptional regulator compare
Atu2809 -0.7 -4.4 cobalamin biosynthesis protein compare
Atu1307 -0.7 -2.9 dihydroorotase compare
Atu4641 -0.7 -2.7 LysR family transcriptional regulator compare
Atu2452 -0.7 -2.8 hypothetical protein compare
Atu1469 -0.7 -1.8 hypothetical protein compare
Atu3264 -0.7 -3.3 IclR family transcriptional regulator compare
Atu2805 -0.7 -2.8 cobalamin synthesis protein compare
Atu5075 -0.7 -3.8 GntR family transcriptional regulator compare
Atu0026 -0.7 -0.6 hypothetical protein compare
Atu3468 -0.7 -0.5 hypothetical protein compare
Atu0689 -0.7 -4.2 ribosomal large subunit pseudouridine synthase B compare
Atu0368 -0.7 -3.1 tRNA pseudouridine synthase I compare
Atu0237 -0.7 -2.5 hypothetical protein compare
Atu1679 -0.7 -1.3 peptidyl prolyl cis-trans isomerase compare
Atu2722 -0.7 -3.5 porin compare
Atu6195 -0.7 -2.5 conserved hypothetical protein compare
Atu4173 -0.7 -1.5 phosphoenolpyruvate-protein phosphotransferase compare
Atu0973 -0.7 -2.7 cycH protein compare
Atu0017 -0.7 -1.3 N-(5-phosphoribosyl) anthranilate isomerase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms