Experiment set13IT031 for Agrobacterium fabrum C58
LB_sorghum_leaf
Group: lb_sorghum_leafMedia: LB + LB_sorghum_leaf
Culturing: Agro_ML11, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/1/22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 2 genes in this experiment
For lb_sorghum_leaf LB_sorghum_leaf in Agrobacterium fabrum C58
For lb_sorghum_leaf LB_sorghum_leaf across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Iron acquisition in Vibrio | 1 |
| Protocatechuate branch of beta-ketoadipate pathway | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| protocatechuate degradation II (ortho-cleavage pathway) | 4 | 4 | 1 |
| aromatic compounds degradation via β-ketoadipate | 9 | 8 | 1 |
| toluene degradation III (aerobic) (via p-cresol) | 11 | 7 | 1 |
| superpathway of aerobic toluene degradation | 30 | 12 | 1 |
| superpathway of aromatic compound degradation via 3-oxoadipate | 35 | 15 | 1 |