| | gene | name | fitness | t score | description | |
|---|
| b2318 | truA | -4.4 | -3.0 | tRNA pseudouridine synthase A (NCBI) | compare |
| b0145 | dksA | -3.4 | -3.2 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b4242 | mgtA | -3.3 | -9.1 | magnesium transporter (NCBI) | compare |
| b0437 | clpP | -2.6 | -7.9 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b3644 | yicC | -2.4 | -9.1 | hypothetical protein (NCBI) | compare |
| b3164 | pnp | -2.4 | -3.5 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3764 | yifE | -2.4 | -7.1 | hypothetical protein (NCBI) | compare |
| b4702 | mgtL | -2.3 | -2.6 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0740 | tolB | -2.2 | -5.3 | translocation protein TolB precursor (NCBI) | compare |
| b4480 | hdfR | -2.2 | -8.0 | transcriptional regulator HdfR (NCBI) | compare |
| b3778 | rep | -2.1 | -9.5 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b0149 | mrcB | -2.1 | -14.2 | penicillin-binding protein 1b (NCBI) | compare |
| b0741 | pal | -2.1 | -4.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3977 | tyrU | -2.1 | -1.5 | tRNA-Tyr (NCBI) | compare |
| b0438 | clpX | -2.1 | -8.5 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2501 | ppk | -2.0 | -11.3 | polyphosphate kinase (NCBI) | compare |
| b1286 | rnb | -2.0 | -3.8 | exoribonuclease II (NCBI) | compare |
| b0630 | lipB | -1.9 | -1.8 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2106 | yohM | -1.9 | -9.5 | membrane protein conferring nickel and cobalt resistance (NCBI) | conserved |
| b2282 | nuoH | -1.9 | -4.2 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3229 | sspA | -1.9 | -3.4 | stringent starvation protein A (NCBI) | compare |
| b2939 | yqgB | -1.8 | -2.6 | predicted protein (RefSeq) | compare |
| b2285 | nuoE | -1.8 | -3.2 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3169 | nusA | -1.8 | -4.5 | transcription elongation factor NusA (NCBI) | compare |
| b1105 | ycfM | -1.7 | -5.4 | predicted outer membrane lipoprotein (NCBI) | compare |
| b0739 | tolA | -1.7 | -3.1 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1293 | sapB | -1.7 | -1.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0949 | uup | -1.7 | -9.8 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3871 | bipA | -1.7 | -11.2 | GTP-binding protein (NCBI) | compare |
| b2814 | metZ | -1.7 | -2.6 | tRNA-Met (NCBI) | compare |
| b1865 | nudB | -1.7 | -1.6 | dATP pyrophosphohydrolase (NCBI) | compare |
| b0738 | tolR | -1.6 | -2.3 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4402 | yjjY | -1.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b1235 | rssB | -1.6 | -8.6 | response regulator of RpoS (NCBI) | compare |
| b4234 | yjgA | -1.6 | -4.8 | hypothetical protein (NCBI) | compare |
| b4049 | dusA | -1.5 | -8.1 | tRNA-dihydrouridine synthase A (RefSeq) | conserved |
| b0660 | ybeZ | -1.5 | -3.8 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b0737 | tolQ | -1.5 | -2.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2288 | nuoA | -1.4 | -3.5 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b3741 | gidA | -1.4 | -3.0 | glucose-inhibited division protein A (NCBI) | compare |
| b4171 | miaA | -1.4 | -2.9 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0726 | sucA | -1.4 | -3.8 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b3780 | rhlB | -1.4 | -10.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b2620 | smpB | -1.4 | -1.6 | SsrA-binding protein (NCBI) | compare |
| b2528 | iscA | -1.3 | -2.0 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b3740 | gidB | -1.3 | -8.2 | glucose-inhibited division protein B (NCBI) | conserved |
| b2938 | speA | -1.3 | -7.6 | arginine decarboxylase (NCBI) | compare |
| b2683 | ygaH | -1.3 | -3.5 | predicted inner membrane protein (NCBI) | compare |
| b0688 | pgm | -1.2 | -2.9 | phosphoglucomutase (NCBI) | compare |
| b1480 | sra | -1.2 | -2.1 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b0990 | cspG | -1.2 | -1.5 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4155 | yjeA | -1.2 | -0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b0014 | dnaK | -1.2 | -2.0 | molecular chaperone DnaK (NCBI) | compare |
| b2567 | rnc | -1.2 | -1.3 | ribonuclease III (NCBI) | compare |
| b3290 | trkA | -1.2 | -1.7 | potassium transporter peripheral membrane component (NCBI) | compare |
| b0439 | lon | -1.2 | -4.3 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1429 | tehA | -1.2 | -1.3 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0232 | yafN | -1.2 | -0.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3979 | thrT | -1.2 | -0.5 | tRNA-Thr (NCBI) | compare |
| b2479 | gcvR | -1.2 | -5.0 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b0471 | ybaB | -1.2 | -3.5 | hypothetical protein (NCBI) | compare |
| b2912 | ygfA | -1.2 | -3.7 | putative ligase (VIMSS) | compare |
| b0564 | appY | -1.1 | -1.4 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b4375 | prfC | -1.1 | -3.2 | peptide chain release factor 3 (NCBI) | compare |
| b1332 | ynaJ | -1.1 | -1.3 | predicted inner membrane protein (NCBI) | compare |
| b2576 | srmB | -1.1 | -3.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b0113 | pdhR | -1.1 | -4.9 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b3792 | wzxE | -1.1 | -5.7 | O-antigen translocase (NCBI) | compare |
| b3398 | yrfF | -1.1 | -3.5 | predicted inner membrane protein (NCBI) | compare |
| b2279 | nuoK | -1.1 | -1.5 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1236 | galU | -1.1 | -3.6 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3426 | glpD | -1.0 | -2.8 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b3613 | yibP | -1.0 | -2.4 | putative membrane protein (VIMSS) | compare |
| b2363 | yfdT | -1.0 | -2.1 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b3811 | xerC | -1.0 | -1.2 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1090 | plsX | -1.0 | -4.4 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b2278 | nuoL | -1.0 | -6.3 | NADH dehydrogenase subunit L (NCBI) | compare |
| b0729 | sucD | -1.0 | -3.6 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b1095 | fabF | -1.0 | -5.4 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1842 | holE | -1.0 | -2.3 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3162 | deaD | -1.0 | -3.7 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2820 | recB | -1.0 | -0.9 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b2946 | yggJ | -0.9 | -4.7 | orf, hypothetical protein (VIMSS) | compare |
| b3107 | yhaL | -0.9 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2189 | proL | -0.9 | -1.8 | tRNA-Pro (NCBI) | compare |
| b3414 | gntY | -0.9 | -4.5 | predicted gluconate transport associated protein (NCBI) | compare |
| b2330 | yfcB | -0.9 | -1.0 | putative adenine-specific methylase (VIMSS) | compare |
| b0049 | apaH | -0.9 | -2.5 | diadenosinetetraphosphatase (NCBI) | compare |
| b2937 | speB | -0.9 | -5.0 | agmatinase (NCBI) | compare |
| b1084 | rne | -0.9 | -3.3 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b0888 | trxB | -0.9 | -3.1 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3844 | fre | -0.9 | -3.8 | NAD(P)H-flavin reductase (NCBI) | compare |
| b2504 | yfgG | -0.9 | -0.6 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b3204 | ptsN | -0.9 | -3.9 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b3706 | trmE | -0.9 | -2.8 | tRNA modification GTPase (NCBI) | compare |
| b2168 | fruK | -0.9 | -1.4 | 1-phosphofructokinase (NCBI) | compare |
| b3962 | udhA | -0.9 | -4.7 | putative oxidoreductase (VIMSS) | compare |
| b3649 | rpoZ | -0.9 | -2.1 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0685 | ybfE | -0.9 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2020 | hisD | -0.9 | -3.8 | histidinol dehydrogenase (NCBI) | compare |
| b1088 | yceD | -0.9 | -3.6 | hypothetical protein (NCBI) | compare |
| b3410 | yhgG | -0.9 | -5.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1171 | b1171 | -0.8 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2569 | lepA | -0.8 | -3.1 | GTP-binding protein LepA (NCBI) | compare |
| b2287 | nuoB | -0.8 | -2.8 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0051 | ksgA | -0.8 | -3.2 | dimethyladenosine transferase (NCBI) | compare |
| b3183 | obgE | -0.8 | -1.2 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3180 | yhbY | -0.8 | -4.2 | predicted RNA-binding protein (NCBI) | compare |
| b0418 | pgpA | -0.8 | -4.3 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b0088 | murD | -0.8 | -1.4 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b0053 | surA | -0.8 | -3.8 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3839 | tatC | -0.8 | -4.4 | TatABCE protein translocation system subunit (NCBI) | compare |
| b2136 | yohD | -0.8 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1676 | pykF | -0.8 | -2.8 | pyruvate kinase (NCBI) | compare |
| b0585 | fes | -0.8 | -4.0 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b4482 | yigE | -0.8 | -2.7 | hypothetical protein (NCBI) | compare |
| b4695 | ykgT | -0.8 | -2.1 | no description | compare |
| b4593 | ymgI | -0.8 | -0.6 | hypothetical protein (RefSeq) | compare |
| b3932 | hslV | -0.8 | -5.2 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b1049 | mdoH | -0.8 | -5.0 | glucosyltransferase MdoH (NCBI) | compare |
| b3042 | b3042 | -0.8 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b0948 | ycbY | -0.7 | -5.0 | predicted methyltransferase (NCBI) | compare |
| b2286 | nuoC | -0.7 | -3.1 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2007 | yeeX | -0.7 | -1.8 | conserved protein (RefSeq) | compare |
| b4180 | rlmB | -0.7 | -4.0 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b1125 | potB | -0.7 | -3.2 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b3931 | hslU | -0.7 | -5.8 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b4413 | sokC | -0.7 | -1.2 | regulatory antisense RNA (NCBI) | compare |
| b1936 | intG | -0.7 | -0.8 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0706 | ybfD | -0.7 | -1.9 | hypothetical protein (NCBI) | compare |
| b4369 | leuP | -0.7 | -2.3 | tRNA-Leu (NCBI) | compare |
| b2498 | upp | -0.7 | -2.0 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1291 | sapD | -0.7 | -1.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1130 | phoP | -0.7 | -0.5 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b3742 | mioC | -0.7 | -3.4 | flavodoxin (NCBI) | compare |
| b1860 | ruvB | -0.7 | -0.7 | Holliday junction DNA helicase B (NCBI) | compare |
| b1864 | yebC | -0.7 | -3.4 | hypothetical protein (NCBI) | compare |
| b2688 | gshA | -0.7 | -4.0 | glutamate--cysteine ligase (NCBI) | compare |
| b4201 | priB | -0.7 | -2.0 | primosomal replication protein N (NCBI) | compare |
| b3842 | rfaH | -0.7 | -2.7 | transcriptional activator RfaH (NCBI) | compare |
| b3409 | feoB | -0.7 | -6.2 | ferrous iron transport protein B (NCBI) | compare |
| b2110 | yehC | -0.7 | -0.8 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3484 | yhhI | -0.7 | -2.0 | predicted transposase (NCBI) | compare |
| b0890 | ftsK | -0.7 | -2.2 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1729 | ydjN | -0.7 | -3.7 | predicted transporter (NCBI) | compare |
| b0303 | ykgI | -0.7 | -0.4 | orf, hypothetical protein (VIMSS) | compare |
| b1040 | csgD | -0.7 | -0.9 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b2023 | hisH | -0.7 | -3.2 | imidazole glycerol phosphate synthase subunit HisH (NCBI) | compare |
| b2317 | dedA | -0.7 | -2.8 | conserved inner membrane protein (NCBI) | compare |
| b2564 | pdxJ | -0.7 | -2.3 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b1519 | tam | -0.7 | -2.9 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b2689 | yqaA | -0.7 | -3.2 | conserved inner membrane protein (NCBI) | compare |
| b4502 | yeiW | -0.7 | -2.0 | hypothetical protein (NCBI) | compare |
| b3190 | yrbA | -0.6 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b2280 | nuoJ | -0.6 | -2.9 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3005 | exbD | -0.6 | -2.9 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1709 | btuD | -0.6 | -0.7 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2277 | nuoM | -0.6 | -3.1 | NADH dehydrogenase subunit M (NCBI) | compare |
| b1506 | yneL | -0.6 | -1.2 | predicted transcriptional regulator (NCBI) | compare |
| b3860 | dsbA | -0.6 | -4.2 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0143 | pcnB | -0.6 | -3.2 | poly(A) polymerase I (VIMSS) | compare |
| b2699 | recA | -0.6 | -0.9 | recombinase A (NCBI) | compare |
| b3390 | aroK | -0.6 | -1.6 | shikimate kinase I (NCBI) | compare |
| b0721 | sdhC | -0.6 | -1.6 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b2291 | yfbR | -0.6 | -2.1 | hypothetical protein (NCBI) | compare |
| b0728 | sucC | -0.6 | -3.8 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b3408 | feoA | -0.6 | -4.5 | ferrous iron transport protein A (NCBI) | compare |
| b3405 | ompR | -0.6 | -3.6 | osmolarity response regulator (NCBI) | compare |
| b4535 | yniD | -0.6 | -0.9 | predicted protein (RefSeq) | compare |
| b3026 | qseC | -0.6 | -2.1 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b2283 | nuoG | -0.6 | -3.5 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2066 | udk | -0.6 | -3.0 | uridine/cytidine kinase (VIMSS) | compare |
| b1334 | fnr | -0.6 | -1.7 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4313 | fimE | -0.6 | -4.2 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b4146 | yjeK | -0.6 | -0.8 | predicted lysine aminomutase (NCBI) | compare |
| b0636 | ybeA | -0.6 | -3.4 | hypothetical protein (NCBI) | compare |
| b1542 | ydfI | -0.6 | -2.5 | predicted mannonate dehydrogenase (NCBI) | compare |
| b2276 | nuoN | -0.6 | -2.7 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b3726 | pstA | -0.6 | -2.6 | phosphate transporter subunit (NCBI) | compare |
| b3963 | fabR | -0.6 | -3.9 | DNA-binding transcriptional repressor (RefSeq) | compare |
| b3348 | slyX | -0.6 | -2.4 | hypothetical protein (NCBI) | compare |
| b4371 | rsmC | -0.6 | -3.7 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1863 | ruvC | -0.6 | -1.0 | Holliday junction resolvase (NCBI) | compare |
| b3781 | trxA | -0.6 | -2.3 | thioredoxin 1 (VIMSS) | compare |
| b1409 | ynbB | -0.6 | -0.8 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b1129 | phoQ | -0.6 | -0.4 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b2804 | fucU | -0.6 | -1.5 | L-fucose mutarotase (NCBI) | compare |
| b0542 | renD | -0.6 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1001 | yccE | -0.6 | -0.3 | hypothetical protein (NCBI) | compare |
| b0237 | pepD | -0.6 | -3.8 | aminoacyl-histidine dipeptidase (peptidase D) (NCBI) | compare |
| b1658 | purR | -0.6 | -2.7 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b3166 | truB | -0.6 | -3.6 | tRNA pseudouridine synthase B (NCBI) | compare |
| b3236 | mdh | -0.6 | -3.5 | malate dehydrogenase (NCBI) | compare |
| b4494 | arpB | -0.6 | -1.2 | no description | compare |
| b0191 | yaeJ | -0.6 | -2.3 | hypothetical protein (NCBI) | compare |
| b2284 | nuoF | -0.5 | -2.1 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1523 | yneG | -0.5 | -1.0 | hypothetical protein (NCBI) | compare |
| b1222 | narX | -0.5 | -2.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0908 | aroA | -0.5 | -3.6 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b2340 | sixA | -0.5 | -1.6 | phosphohistidine phosphatase (NCBI) | compare |