| | gene | name | fitness | t score | description | |
|---|
| b1493 | gadB | +1.5 | 1.4 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3784 | rfe | +1.3 | 12.1 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b0200 | gmhB | +1.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4647 | mokA | +1.0 | 1.2 | no description | compare |
| b3863 | polA | +1.0 | 1.2 | DNA polymerase I (NCBI) | compare |
| b3816 | corA | +1.0 | 7.8 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b4461 | yfjD | +1.0 | 7.4 | predicted inner membrane protein (RefSeq) | conserved |
| b1524 | yneH | +0.9 | 1.2 | predicted glutaminase (NCBI) | compare |
| b1279 | yciS | +0.9 | 1.4 | conserved inner membrane protein (NCBI) | compare |
| b0142 | folK | +0.9 | 0.6 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4394 | yjjX | +0.8 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b3787 | rffD | +0.8 | 6.5 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b2830 | nudH | +0.8 | 1.3 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3794 | rffM | +0.8 | 5.1 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b4533 | ynfO | +0.8 | 1.9 | Qin prophage; predicted protein (NCBI) | compare |
| b4552 | yrhC | +0.8 | 0.9 | no description | compare |
| b1434 | ydcN | +0.8 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3146 | yraL | +0.7 | 4.5 | predicted methyltransferase (NCBI) | conserved |
| b3786 | rffE | +0.7 | 6.4 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b4522 | yciX_1 | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b0623 | cspE | +0.7 | 0.7 | cold shock protein E (NCBI) | compare |
| b1361 | ydaW | +0.7 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b0357 | yaiN | +0.7 | 1.8 | putative alpha helix chain (VIMSS) | compare |
| b0405 | queA | +0.7 | 4.6 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b2990 | hybG | +0.7 | 2.0 | hydrogenase 2 accessory protein (NCBI) | compare |
| b1671 | ydhX | +0.7 | 2.1 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1183 | umuD | +0.7 | 1.7 | DNA polymerase V, subunit D (NCBI) | compare |
| b0796 | ybiH | +0.7 | 2.4 | putative transcriptional regulator (VIMSS) | compare |
| b1823 | cspC | +0.7 | 1.6 | stress protein, member of the CspA-family (NCBI) | compare |
| b1486 | ddpB | +0.6 | 2.4 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b0683 | fur | +0.6 | 0.6 | ferric uptake regulator (NCBI) | compare |
| b2071 | yegJ | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b2846 | yqeH | +0.6 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.6 | 1.1 | hypothetical protein (NCBI) | compare |
| b4513 | kdpF | +0.6 | 1.6 | potassium ion accessory transporter subunit (NCBI) | compare |
| b2506 | yfgI | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b2258 | b2258 | +0.6 | 0.9 | putative transport/receptor protein (VIMSS) | compare |
| b4436 | ryeC | +0.6 | 1.4 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1103 | ycfF | +0.6 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0249 | ykfF | +0.6 | 1.6 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1418 | cybB | +0.6 | 1.9 | cytochrome b(561) (VIMSS) | compare |
| b1953 | b1953 | +0.6 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1548 | nohA | +0.6 | 1.3 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b4391 | yjjK | +0.6 | 4.4 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1925 | fliS | +0.6 | 3.2 | flagellar protein FliS (NCBI) | compare |
| b1831 | proQ | +0.6 | 2.2 | putative solute/DNA competence effector (NCBI) | compare |
| b1882 | cheY | +0.6 | 0.6 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1281 | pyrF | +0.6 | 1.7 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b2096 | gatY | +0.6 | 2.3 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2204 | napH | +0.6 | 2.9 | quinol dehydrogenase membrane component (NCBI) | compare |
| b1960 | vsr | +0.5 | 2.3 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1667 | ydhR | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b3915 | fieF | +0.5 | 4.3 | ferrous iron efflux protein F (NCBI) | conserved |
| b2635 | ypjK | +0.5 | 2.4 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0696 | kdpC | +0.5 | 2.2 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1677 | lpp | +0.5 | 1.4 | murein lipoprotein (NCBI) | compare |
| b1627 | rsxA | +0.5 | 1.6 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2424 | cysU | +0.5 | 1.4 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b4701 | sokX | +0.5 | 0.5 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1837 | yebW | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1164 | ycgZ | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b4596 | yciZ | +0.5 | 1.3 | hypothetical protein (RefSeq) | compare |
| b3034 | nudF | +0.5 | 3.2 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b1150 | ymfR | +0.5 | 0.8 | e14 prophage; predicted protein (NCBI) | compare |
| b3029 | ygiN | +0.5 | 1.5 | quinol monooxygenase (NCBI) | compare |
| b3790 | rffC | +0.5 | 3.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4548 | ypjJ | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b4373 | rimI | +0.5 | 1.7 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b2419 | yfeK | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b4481 | rffT | +0.5 | 3.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0641 | rlpB | +0.5 | 1.5 | minor lipoprotein (NCBI) | compare |
| b0547 | ybcN | +0.5 | 2.2 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1161 | ycgX | +0.5 | 0.5 | hypothetical protein (NCBI) | compare |
| b4527 | b1354 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1901 | araF | +0.5 | 1.8 | L-arabinose transporter subunit (NCBI) | compare |
| b2422 | cysA | +0.5 | 3.5 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b0937 | ssuE | +0.5 | 1.0 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b1305 | pspB | +0.5 | 1.8 | phage shock protein B (NCBI) | compare |
| b1218 | chaC | +0.5 | 2.4 | regulatory protein for cation transport (RefSeq) | compare |
| b3472 | b3472 | +0.5 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1114 | mfd | +0.5 | 3.2 | transcription-repair coupling factor (NCBI) | compare |
| b3500 | gor | +0.5 | 0.9 | glutathione reductase (NCBI) | compare |
| b1333 | uspE | +0.5 | 1.7 | stress-induced protein (NCBI) | compare |
| b3281 | aroE | +0.5 | 4.0 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b0520 | ylbF | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b2111 | yehD | +0.5 | 1.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2703 | srlE | +0.5 | 2.7 | glucitol/sorbitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b1874 | cutC | +0.4 | 1.3 | copper homeostasis protein (NCBI) | compare |
| b1724 | ydiZ | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b4538 | yoeF | +0.4 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1824 | yobF | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b3806 | cyaA | +0.4 | 2.1 | adenylate cyclase (NCBI) | compare |
| b3033 | yqiB | +0.4 | 2.3 | predicted dehydrogenase (NCBI) | compare |
| b1777 | b1777 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2807 | ygdD | +0.4 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b1295 | ymjA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2490 | b2490 | +0.4 | 1.8 | putative protein processing element (VIMSS) | compare |
| b2459 | eutT | +0.4 | 2.7 | predicted cobalamin adenosyltransferase in ethanolamine utilization (NCBI) | compare |
| b3389 | aroB | +0.4 | 3.4 | 3-dehydroquinate synthase (NCBI) | compare |
| b2711 | norW | +0.4 | 2.0 | nitric oxide reductase (NCBI) | compare |
| b3074 | ygjH | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b3858 | yihD | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b1456 | rhsE | +0.4 | 2.3 | rhsE element core protein RshE (RefSeq) | compare |
| b0953 | rmf | +0.4 | 0.9 | ribosome modulation factor (NCBI) | compare |
| b2237 | inaA | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b4012 | yjaB | +0.4 | 1.4 | predicted acetyltransferase (NCBI) | compare |
| b2423 | cysW | +0.4 | 1.9 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b3504 | yhiS | +0.4 | 0.2 | hypothetical protein (RefSeq) | compare |
| b4451 | ryhB | +0.4 | 0.7 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1511 | ydeV | +0.4 | 2.0 | putative kinase (VIMSS) | compare |
| b1610 | tus | +0.4 | 2.0 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1802 | yeaW | +0.4 | 2.0 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2928 | yggC | +0.4 | 3.0 | hypothetical protein (NCBI) | compare |
| b1313 | ycjQ | +0.4 | 2.4 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b1422 | ydcI | +0.4 | 2.4 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b0387 | yaiI | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2637 | yfjT | +0.4 | 1.3 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1306 | pspC | +0.4 | 1.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b1180 | ycgM | +0.4 | 1.4 | predicted isomerase/hydrolase (NCBI) | compare |
| b1348 | lar | +0.4 | 0.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1482 | osmC | +0.4 | 1.0 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b1961 | dcm | +0.4 | 0.9 | DNA cytosine methylase (NCBI) | compare |
| b2105 | yohL | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1101 | ptsG | +0.4 | 2.8 | fused glucose-specific PTS enzymes: IIB component/IIC component (NCBI) | compare |
| b4408 | csrB | +0.4 | 1.6 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b2969 | yghE | +0.4 | 1.5 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b1602 | pntB | +0.4 | 1.8 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b2698 | recX | +0.4 | 1.0 | RecA regulator RecX (NCBI) | compare |
| b3181 | greA | +0.4 | 2.1 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3587 | yiaW | +0.4 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b4627 | ykfL | +0.4 | 1.4 | no description | compare |
| b1104 | ycfL | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b1698 | ydiR | +0.4 | 1.6 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b4557 | yidD | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1626 | b1626 | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1727 | yniC | +0.4 | 1.2 | predicted hydrolase (NCBI) | compare |
| b1135 | ymfC | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0097 | yacA | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0994 | torT | +0.4 | 1.6 | periplasmic sensory protein associated with the TorRS two-component regulatory system (NCBI) | compare |
| b3868 | glnG | +0.4 | 2.0 | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | compare |
| b2208 | napF | +0.4 | 2.0 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b1989 | asnV | +0.4 | 1.2 | tRNA-Asn (NCBI) | compare |
| b1221 | narL | +0.4 | 1.3 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b1553 | ydfP | +0.4 | 1.1 | Qin prophage; conserved protein (NCBI) | compare |
| b4501 | torI | +0.4 | 2.0 | response regulator inhibitor for tor operon (NCBI) | compare |
| b4519 | icdC | +0.4 | 1.4 | no description | compare |
| b1787 | yeaK | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0410 | yajD | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b4570 | lomR | +0.4 | 0.8 | no description | compare |
| b0946 | ycbW | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3933 | ftsN | +0.4 | 2.6 | essential cell division protein (NCBI) | compare |
| b1061 | dinI | +0.4 | 1.9 | DNA damage-inducible protein I (NCBI) | compare |
| b4541 | yehK | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1372 | b1372 | +0.4 | 2.2 | putative membrane protein (VIMSS) | compare |
| b4503 | yafF | +0.4 | 0.5 | no description | compare |
| b0789 | ybhO | +0.4 | 1.6 | cardiolipin synthase 2 (NCBI) | compare |
| b2301 | yfcF | +0.4 | 1.8 | predicted enzyme (NCBI) | compare |
| b0504 | ybbS | +0.4 | 1.5 | DNA-binding transcriptional activator of the allD operon (NCBI) | compare |
| b1686 | ydiI | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b2377 | yfdY | +0.3 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b1419 | ydcA | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b4609 | ryfD | +0.3 | 1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b1475 | fdnH | +0.3 | 2.0 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b4631 | ykgQ | +0.3 | 0.7 | no description | compare |
| b4045 | yjbJ | +0.3 | 1.1 | predicted stress response protein (NCBI) | compare |
| b2741 | rpoS | +0.3 | 2.0 | RNA polymerase sigma factor (NCBI) | compare |
| b0015 | dnaJ | +0.3 | 2.6 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1588 | ynfF | +0.3 | 1.3 | oxidoreductase subunit (RefSeq) | compare |
| b1790 | yeaM | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.2 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b2354 | yfdK | +0.3 | 1.7 | CPS-53 (KpLE1) prophage; conserved protein (NCBI) | compare |
| b2293 | yfbT | +0.3 | 1.2 | putative phosphatase (VIMSS) | compare |
| b3427 | yzgL | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1442 | ydcU | +0.3 | 1.8 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b2771 | ygcS | +0.3 | 1.8 | putative transport protein (VIMSS) | compare |
| b1635 | gst | +0.3 | 1.7 | glutathionine S-transferase (NCBI) | compare |
| b0245 | ykfI | +0.3 | 2.2 | CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system (NCBI) | compare |
| b1850 | eda | +0.3 | 0.9 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b1741 | ydjQ | +0.3 | 0.9 | endonuclease of nucleotide excision repair (NCBI) | compare |
| b2225 | yfaP | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b0959 | yccR | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b4190 | yjfP | +0.3 | 1.8 | predicted hydrolase (NCBI) | compare |
| b4395 | ytjC | +0.3 | 2.0 | phosphoglycerate mutase (NCBI) | compare |
| b2005 | yeeV | +0.3 | 1.5 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1271 | yciK | +0.3 | 1.1 | short chain dehydrogenase (NCBI) | compare |
| b2977 | glcG | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1464 | yddE | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b4630 | ykgP | +0.3 | 1.1 | no description | compare |
| b2554 | yfhA | +0.3 | 2.3 | predicted DNA-binding response regulator in two-component system (NCBI) | compare |
| b1919 | yedO | +0.3 | 1.4 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b0970 | yccA | +0.3 | 1.2 | inner membrane protein (NCBI) | compare |
| b2125 | yehT | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2769 | ygcQ | +0.3 | 1.3 | putative flavoprotein (VIMSS) | compare |
| b3966 | btuB | +0.3 | 2.8 | vitamin B12/cobalamin outer membrane transporter (NCBI) | compare |
| b3677 | yidI | +0.3 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b0426 | yajQ | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2209 | eco | +0.3 | 0.9 | ecotin precursor (NCBI) | compare |
| b1512 | lsrR | +0.3 | 1.2 | lsr operon transcriptional repressor (NCBI) | compare |
| b4184 | yjfL | +0.3 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b1728 | ydjM | +0.3 | 1.1 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |