| | gene | name | fitness | t score | description | |
|---|
| b0958 | sulA | +3.6 | 14.1 | SOS cell division inhibitor (NCBI) | compare |
| b0912 | ihfB | +2.9 | 10.7 | integration host factor subunit beta (NCBI) | compare |
| b2518 | ndk | +2.8 | 10.8 | nucleoside diphosphate kinase (NCBI) | compare |
| b3493 | pitA | +2.6 | 16.5 | phosphate transporter, low-affinity (NCBI) | compare |
| b0092 | ddlB | +2.3 | 11.3 | D-alanylalanine synthetase (NCBI) | compare |
| b1235 | rssB | +2.0 | 10.8 | response regulator of RpoS (NCBI) | compare |
| b1349 | recT | +2.0 | 9.6 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b3977 | tyrU | +1.9 | 2.3 | tRNA-Tyr (NCBI) | compare |
| b1712 | ihfA | +1.8 | 2.2 | integration host factor subunit alpha (NCBI) | compare |
| b2281 | nuoI | +1.8 | 5.3 | NADH dehydrogenase subunit I (NCBI) | compare |
| b1493 | gadB | +1.7 | 1.1 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3844 | fre | +1.7 | 8.4 | NAD(P)H-flavin reductase (NCBI) | compare |
| b3806 | cyaA | +1.6 | 7.4 | adenylate cyclase (NCBI) | compare |
| b2909 | ygfB | +1.6 | 5.7 | orf, hypothetical protein (VIMSS) | compare |
| b2285 | nuoE | +1.5 | 2.6 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0632 | dacA | +1.5 | 9.4 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b1840 | yebZ | +1.4 | 6.2 | predicted inner membrane protein (NCBI) | compare |
| b1686 | ydiI | +1.4 | 3.3 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | +1.4 | 1.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2299 | yfcD | +1.4 | 6.5 | predicted NUDIX hydrolase (NCBI) | compare |
| b2279 | nuoK | +1.4 | 2.5 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1540 | ydfH | +1.4 | 2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0432 | cyoA | +1.4 | 8.9 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b0059 | hepA | +1.3 | 9.3 | ATP-dependent helicase HepA (NCBI) | compare |
| b3398 | yrfF | +1.3 | 6.1 | predicted inner membrane protein (NCBI) | compare |
| b0428 | cyoE | +1.3 | 7.3 | protoheme IX farnesyltransferase (NCBI) | compare |
| b4294 | insA-7 | +1.3 | 3.1 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b4522 | yciX_1 | +1.3 | 3.7 | hypothetical protein (NCBI) | compare |
| b2502 | ppx | +1.3 | 7.5 | exopolyphosphatase (NCBI) | compare |
| b2516 | yfgA | +1.2 | 5.5 | hypothetical protein (NCBI) | compare |
| b2906 | visC | +1.2 | 5.7 | hypothetical protein (NCBI) | compare |
| b4533 | ynfO | +1.2 | 2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b2216 | rcsD | +1.2 | 7.9 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b2218 | rcsC | +1.1 | 7.0 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b1284 | yciT | +1.1 | 6.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1109 | ndh | +1.1 | 5.1 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b3129 | sohA | +1.1 | 2.9 | predicted regulator (NCBI) | compare |
| b0142 | folK | +1.1 | 0.6 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2948 | yqgE | +1.1 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b1348 | lar | +1.1 | 2.2 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0429 | cyoD | +1.1 | 4.1 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b0226 | dinJ | +1.0 | 3.5 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0846 | ybjK | +1.0 | 5.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2824 | ygdB | +1.0 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b2911 | ssrS | +1.0 | 2.4 | 6S regulatory RNA (NCBI) | compare |
| b1246 | oppD | +1.0 | 6.6 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1920 | fliY | +1.0 | 2.3 | cystine transporter subunit (NCBI) | compare |
| b1358 | ydaT | +1.0 | 0.8 | Rac prophage; predicted protein (NCBI) | compare |
| b1569 | dicC | +1.0 | 2.6 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b0081 | mraZ | +1.0 | 4.4 | hypothetical protein (NCBI) | compare |
| b1804 | rnd | +1.0 | 3.5 | ribonuclease D (NCBI) | compare |
| b4436 | ryeC | +1.0 | 1.3 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b0430 | cyoC | +1.0 | 4.3 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b3973 | birA | +1.0 | 3.0 | biotin--protein ligase (NCBI) | compare |
| b2284 | nuoF | +1.0 | 3.8 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b0431 | cyoB | +1.0 | 6.7 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b4578 | insP | +1.0 | 3.1 | no description | compare |
| b2479 | gcvR | +1.0 | 4.0 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1286 | rnb | +0.9 | 2.0 | exoribonuclease II (NCBI) | compare |
| b2277 | nuoM | +0.9 | 4.2 | NADH dehydrogenase subunit M (NCBI) | compare |
| b3871 | bipA | +0.9 | 6.7 | GTP-binding protein (NCBI) | compare |
| b3229 | sspA | +0.9 | 3.2 | stringent starvation protein A (NCBI) | compare |
| b3082 | ygjM | +0.9 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1245 | oppC | +0.9 | 4.5 | oligopeptide transporter subunit (NCBI) | compare |
| b0720 | gltA | +0.9 | 4.3 | citrate synthase (NCBI) | compare |
| b0746 | valZ | +0.9 | 2.5 | tRNA-Val (NCBI) | compare |
| b1841 | yobA | +0.9 | 1.8 | hypothetical protein (NCBI) | compare |
| b2283 | nuoG | +0.9 | 4.6 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b0018 | mokC | +0.9 | 1.3 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0088 | murD | +0.9 | 1.2 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b1361 | ydaW | +0.9 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b1527 | yneK | +0.9 | 2.1 | hypothetical protein (NCBI) | compare |
| b0880 | cspD | +0.9 | 2.0 | cold shock protein homolog (NCBI) | compare |
| b4207 | fklB | +0.9 | 3.5 | FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (VIMSS) | compare |
| b3766 | ilvL | +0.9 | 3.8 | ilvG operon leader peptide (NCBI) | compare |
| b0437 | clpP | +0.9 | 2.2 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b4538 | yoeF | +0.9 | 0.9 | hypothetical protein (RefSeq) | compare |
| b1138 | ymfE | +0.8 | 1.3 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1231 | tyrT | +0.8 | 0.8 | tRNA-Tyr (NCBI) | compare |
| b3119 | tdcR | +0.8 | 1.6 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1259 | yciG | +0.8 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1279 | yciS | +0.8 | 0.9 | conserved inner membrane protein (NCBI) | compare |
| b2022 | hisB | +0.8 | 4.4 | imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) | compare |
| b4042 | dgkA | +0.8 | 1.9 | diacylglycerol kinase (NCBI) | compare |
| b1656 | sodB | +0.8 | 1.9 | superoxide dismutase, Fe (NCBI) | compare |
| b0764 | modB | +0.8 | 2.7 | molybdate ABC transporter permease protein (NCBI) | compare |
| b1438 | ydcQ | +0.8 | 2.2 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2419 | yfeK | +0.8 | 0.8 | hypothetical protein (NCBI) | compare |
| b4536 | yobH | +0.8 | 2.7 | hypothetical protein (NCBI) | compare |
| b0102 | yacF | +0.8 | 3.4 | hypothetical protein (NCBI) | compare |
| b0853 | ybjN | +0.8 | 3.0 | predicted oxidoreductase (NCBI) | compare |
| b4180 | rlmB | +0.7 | 4.5 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b0225 | yafQ | +0.7 | 2.4 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0232 | yafN | +0.7 | 0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1104 | ycfL | +0.7 | 1.1 | hypothetical protein (NCBI) | compare |
| b1850 | eda | +0.7 | 1.3 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b0783 | moaC | +0.7 | 2.8 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b2287 | nuoB | +0.7 | 2.3 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1079 | flgH | +0.7 | 2.3 | flagellar L-ring protein precursor H (NCBI) | compare |
| b2446 | yffO | +0.7 | 2.1 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1213 | ychQ | +0.7 | 2.2 | predicted transcriptional regulator (NCBI) | compare |
| b1103 | ycfF | +0.7 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0619 | citA | +0.7 | 3.8 | sensory histidine kinase in two-component regulatory system with citB (NCBI) | compare |
| b1733 | chbG | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b3071 | yqjI | +0.7 | 3.2 | predicted transcriptional regulator (NCBI) | compare |
| b1243 | oppA | +0.7 | 2.4 | oligopeptide transporter subunit (NCBI) | compare |
| b2111 | yehD | +0.7 | 1.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2005 | yeeV | +0.7 | 3.3 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b2113 | mrp | +0.7 | 3.4 | putative ATPase (VIMSS) | compare |
| b3636 | rpmG | +0.7 | 0.9 | 50S ribosomal protein L33 (NCBI) | compare |
| b2540 | hcaC | +0.7 | 1.5 | 3-phenylpropionate dioxygenase, predicted ferredoxin subunit (NCBI) | compare |
| b3742 | mioC | +0.7 | 2.9 | flavodoxin (NCBI) | compare |
| b1150 | ymfR | +0.7 | 0.7 | e14 prophage; predicted protein (NCBI) | compare |
| b3354 | yheU | +0.7 | 3.0 | hypothetical protein (NCBI) | compare |
| b4407 | thiS | +0.7 | 1.1 | sulfur carrier protein ThiS (NCBI) | compare |
| b4568 | ytjA | +0.7 | 1.6 | predicted protein (RefSeq) | compare |
| b0806 | ybiM | +0.7 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1152 | ymfP | +0.7 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2278 | nuoL | +0.7 | 4.0 | NADH dehydrogenase subunit L (NCBI) | compare |
| b1572 | ydfB | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0617 | citD | +0.7 | 1.1 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b0790 | ybhP | +0.7 | 2.4 | predicted DNase (NCBI) | compare |
| b4011 | yjaA | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b0966 | hspQ | +0.7 | 3.2 | DNA-binding protein, hemimethylated (RefSeq) | compare |
| b1357 | ydaS | +0.7 | 1.5 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0852 | rimK | +0.7 | 1.9 | ribosomal protein S6 modification protein (NCBI) | compare |
| b1426 | ydcH | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1247 | oppF | +0.6 | 2.9 | oligopeptide transporter subunit (NCBI) | compare |
| b2175 | spr | +0.6 | 1.5 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b1944 | fliL | +0.6 | 2.0 | flagellar basal body-associated protein FliL (NCBI) | compare |
| b2490 | b2490 | +0.6 | 1.6 | putative protein processing element (VIMSS) | compare |
| b2876 | b2876 | +0.6 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1261 | trpB | +0.6 | 1.0 | tryptophan synthase subunit beta (NCBI) | compare |
| b1431 | ydcL | +0.6 | 2.2 | predicted lipoprotein (NCBI) | compare |
| b4570 | lomR | +0.6 | 1.1 | no description | compare |
| b1939 | fliG | +0.6 | 2.2 | flagellar motor switch protein G (NCBI) | compare |
| b1591 | b1591 | +0.6 | 1.4 | putative oxidoreductase component (VIMSS) | compare |
| b3414 | gntY | +0.6 | 2.8 | predicted gluconate transport associated protein (NCBI) | compare |
| b2276 | nuoN | +0.6 | 2.3 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2286 | nuoC | +0.6 | 2.8 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2061 | wzb | +0.6 | 1.4 | protein-tyrosine phosphatase (NCBI) | compare |
| b2409 | yfeR | +0.6 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3740 | gidB | +0.6 | 4.5 | glucose-inhibited division protein B (NCBI) | compare |
| b4062 | soxS | +0.6 | 1.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1992 | cobS | +0.6 | 0.5 | cobalamin synthase (NCBI) | compare |
| b4571 | wbbL | +0.6 | 1.5 | no description | compare |
| b1854 | pykA | +0.6 | 3.4 | pyruvate kinase (NCBI) | compare |
| b1128 | ycfD | +0.6 | 3.6 | orf, hypothetical protein (VIMSS) | compare |
| b4655 | ythA | +0.6 | 1.0 | expressed protein (RefSeq) | compare |
| b3184 | yhbE | +0.6 | 3.5 | conserved inner membrane protein (NCBI) | compare |
| b2078 | baeS | +0.6 | 2.6 | sensory histidine kinase in two-component regulatory system with BaeR (NCBI) | compare |
| b1410 | ynbC | +0.6 | 2.6 | predicted hydrolase (NCBI) | compare |
| b0340 | cynS | +0.6 | 1.7 | cyanate hydratase (NCBI) | compare |
| b0781 | moaA | +0.6 | 2.9 | molybdenum cofactor biosynthesis protein A (NCBI) | compare |
| b1070 | flgN | +0.6 | 0.9 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4210 | ytfF | +0.6 | 3.4 | predicted inner membrane protein (RefSeq) | compare |
| b1648 | b1648 | +0.6 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2730 | hypE | +0.6 | 2.5 | carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein (RefSeq) | compare |
| b0998 | torD | +0.6 | 0.8 | chaperone protein TorD (NCBI) | compare |
| b3210 | arcB | +0.6 | 2.8 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1703 | ydiA | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b1073 | flgB | +0.6 | 2.5 | flagellar basal-body rod protein B (NCBI) | compare |
| b1242 | ychE | +0.6 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b1586 | b1586 | +0.6 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | +0.6 | 0.5 | predicted oxidoreductase (NCBI) | compare |
| b0146 | sfsA | +0.6 | 2.4 | sugar fermentation stimulation protein A (NCBI) | compare |
| b4513 | kdpF | +0.5 | 1.5 | potassium ion accessory transporter subunit (NCBI) | compare |
| b1476 | fdnI | +0.5 | 0.6 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2708 | gutQ | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2443 | yffL | +0.5 | 2.6 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1512 | lsrR | +0.5 | 2.1 | lsr operon transcriptional repressor (NCBI) | compare |
| b0539 | ybcC | +0.5 | 2.5 | DLP12 prophage; predicted exonuclease (RefSeq) | compare |
| b3537 | yhjT | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2586 | yfiM | +0.5 | 1.3 | predicted protein (RefSeq) | compare |
| b1730 | ydjO | +0.5 | 0.6 | predicted protein (RefSeq) | compare |
| b4373 | rimI | +0.5 | 1.2 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4595 | yciY | +0.5 | 1.0 | hypothetical protein (RefSeq) | compare |
| b1548 | nohA | +0.5 | 0.7 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1085 | b1085 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1171 | b1171 | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3271 | yhdZ | +0.5 | 1.9 | predicted amino-acid transporter subunit (NCBI) | compare |
| b2282 | nuoH | +0.5 | 1.6 | NADH dehydrogenase subunit H (NCBI) | compare |
| b1675 | ydhZ | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b0427 | yajR | +0.5 | 3.3 | putative transport protein (VIMSS) | compare |
| b3784 | rfe | +0.5 | 3.7 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1811 | yoaH | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b3920 | yiiQ | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b0247 | ykfG | +0.5 | 0.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4394 | yjjX | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4234 | yjgA | +0.5 | 2.8 | hypothetical protein (NCBI) | compare |
| b1597 | asr | +0.5 | 1.7 | acid shock protein (VIMSS) | compare |
| b0705 | ybfL | +0.5 | 0.6 | putative receptor protein (VIMSS) | compare |
| b2356 | yfdM | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0592 | fepB | +0.5 | 3.3 | iron-enterobactin transporter subunit (NCBI) | compare |
| b0580 | ybdJ | +0.5 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b2955 | yggW | +0.5 | 2.2 | coproporphyrinogen III oxidase (NCBI) | compare |
| b1491 | yddW | +0.5 | 2.7 | predicted liprotein (NCBI) | compare |
| b4461 | yfjD | +0.5 | 2.8 | predicted inner membrane protein (RefSeq) | compare |
| b1669 | ydhT | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b2013 | yeeE | +0.5 | 2.5 | predicted inner membrane protein (NCBI) | compare |