| | gene | name | fitness | t score | description | |
|---|
| b0912 | ihfB | +2.2 | 11.4 | integration host factor subunit beta (NCBI) | compare |
| b0958 | sulA | +1.9 | 8.9 | SOS cell division inhibitor (NCBI) | compare |
| b3493 | pitA | +1.6 | 12.4 | phosphate transporter, low-affinity (NCBI) | compare |
| b1349 | recT | +1.6 | 7.7 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b0059 | hepA | +1.5 | 13.2 | ATP-dependent helicase HepA (NCBI) | compare |
| b0092 | ddlB | +1.5 | 7.8 | D-alanylalanine synthetase (NCBI) | compare |
| b4538 | yoeF | +1.4 | 3.2 | hypothetical protein (RefSeq) | compare |
| b1712 | ihfA | +1.4 | 2.1 | integration host factor subunit alpha (NCBI) | compare |
| b3229 | sspA | +1.3 | 5.0 | stringent starvation protein A (NCBI) | compare |
| b1348 | lar | +1.3 | 2.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1231 | tyrT | +1.3 | 1.6 | tRNA-Tyr (NCBI) | compare |
| b2906 | visC | +1.2 | 7.0 | hypothetical protein (NCBI) | compare |
| b1984 | asnW | +1.2 | 2.0 | tRNA-Asn (NCBI) | compare |
| b4163 | glyV | +1.2 | 1.8 | tRNA-Gly (NCBI) | compare |
| b2518 | ndk | +1.2 | 4.8 | nucleoside diphosphate kinase (NCBI) | compare |
| b3806 | cyaA | +1.1 | 6.2 | adenylate cyclase (NCBI) | compare |
| b4701 | sokX | +1.1 | 1.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2285 | nuoE | +1.1 | 3.3 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0428 | cyoE | +1.1 | 6.7 | protoheme IX farnesyltransferase (NCBI) | compare |
| b0088 | murD | +1.0 | 1.8 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b2479 | gcvR | +1.0 | 4.8 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b3844 | fre | +1.0 | 5.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b0632 | dacA | +1.0 | 7.2 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b1493 | gadB | +1.0 | 0.8 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3979 | thrT | +1.0 | 0.6 | tRNA-Thr (NCBI) | compare |
| b1804 | rnd | +1.0 | 4.0 | ribonuclease D (NCBI) | compare |
| b2279 | nuoK | +0.9 | 2.3 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0437 | clpP | +0.9 | 5.4 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b2528 | iscA | +0.9 | 2.2 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b4596 | yciZ | +0.9 | 2.1 | hypothetical protein (RefSeq) | compare |
| b0438 | clpX | +0.9 | 5.9 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1765 | ydjA | +0.9 | 1.2 | predicted oxidoreductase (NCBI) | compare |
| b0357 | yaiN | +0.9 | 2.3 | putative alpha helix chain (VIMSS) | compare |
| b2284 | nuoF | +0.9 | 4.2 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b2280 | nuoJ | +0.9 | 5.1 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1361 | ydaW | +0.8 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b0432 | cyoA | +0.8 | 6.1 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b2299 | yfcD | +0.8 | 3.7 | predicted NUDIX hydrolase (NCBI) | compare |
| b1235 | rssB | +0.8 | 4.7 | response regulator of RpoS (NCBI) | compare |
| b4704 | arrS | +0.8 | 0.4 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1874 | cutC | +0.8 | 2.4 | copper homeostasis protein (NCBI) | compare |
| b2909 | ygfB | +0.8 | 5.0 | orf, hypothetical protein (VIMSS) | compare |
| b1104 | ycfL | +0.8 | 1.7 | hypothetical protein (NCBI) | compare |
| b0720 | gltA | +0.8 | 4.3 | citrate synthase (NCBI) | compare |
| b3398 | yrfF | +0.8 | 2.8 | predicted inner membrane protein (NCBI) | compare |
| b4522 | yciX_1 | +0.8 | 2.1 | hypothetical protein (NCBI) | compare |
| b2911 | ssrS | +0.8 | 1.5 | 6S regulatory RNA (NCBI) | compare |
| b0429 | cyoD | +0.7 | 3.6 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b1850 | eda | +0.7 | 1.5 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b1160 | elbA | +0.7 | 0.5 | hypothetical protein (NCBI) | compare |
| b2237 | inaA | +0.7 | 2.6 | hypothetical protein (NCBI) | compare |
| b0081 | mraZ | +0.7 | 3.8 | hypothetical protein (NCBI) | compare |
| b3414 | gntY | +0.7 | 3.4 | predicted gluconate transport associated protein (NCBI) | compare |
| b1109 | ndh | +0.7 | 3.0 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b4012 | yjaB | +0.7 | 1.5 | predicted acetyltransferase (NCBI) | compare |
| b0989 | cspH | +0.7 | 1.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b2216 | rcsD | +0.7 | 5.6 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b2502 | ppx | +0.7 | 5.0 | exopolyphosphatase (NCBI) | compare |
| b3871 | bipA | +0.7 | 5.8 | GTP-binding protein (NCBI) | compare |
| b4519 | icdC | +0.7 | 2.7 | no description | compare |
| b1777 | b1777 | +0.7 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3129 | sohA | +0.6 | 2.1 | predicted regulator (NCBI) | compare |
| b4394 | yjjX | +0.6 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2283 | nuoG | +0.6 | 3.8 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2258 | b2258 | +0.6 | 1.0 | putative transport/receptor protein (VIMSS) | compare |
| b2111 | yehD | +0.6 | 1.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0853 | ybjN | +0.6 | 3.4 | predicted oxidoreductase (NCBI) | compare |
| b2278 | nuoL | +0.6 | 4.4 | NADH dehydrogenase subunit L (NCBI) | compare |
| b1379 | hslJ | +0.6 | 2.3 | heat-inducible protein (NCBI) | compare |
| b4598 | yncL | +0.6 | 1.9 | hypothetical protein (RefSeq) | compare |
| b1461 | ydcE | +0.6 | 2.0 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b2281 | nuoI | +0.6 | 1.9 | NADH dehydrogenase subunit I (NCBI) | compare |
| b2293 | yfbT | +0.6 | 1.9 | putative phosphatase (VIMSS) | compare |
| b1418 | cybB | +0.6 | 2.2 | cytochrome b(561) (VIMSS) | compare |
| b2377 | yfdY | +0.6 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b1671 | ydhX | +0.6 | 1.1 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b2277 | nuoM | +0.6 | 3.5 | NADH dehydrogenase subunit M (NCBI) | compare |
| b1840 | yebZ | +0.6 | 2.7 | predicted inner membrane protein (NCBI) | compare |
| b2144 | sanA | +0.6 | 4.7 | hypothetical protein (NCBI) | compare |
| b2814 | metZ | +0.6 | 1.5 | tRNA-Met (NCBI) | compare |
| b1573 | ydfC | +0.6 | 1.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b4418 | sraB | +0.6 | 1.4 | unknown RNA (NCBI) | compare |
| b3766 | ilvL | +0.6 | 2.7 | ilvG operon leader peptide (NCBI) | compare |
| b2711 | norW | +0.6 | 3.5 | nitric oxide reductase (NCBI) | compare |
| b4686 | yshB | +0.6 | 2.3 | expressed protein (RefSeq) | compare |
| b1739 | osmE | +0.6 | 1.3 | DNA-binding transcriptional activator (NCBI) | compare |
| b1919 | yedO | +0.6 | 2.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b0212 | gloB | +0.6 | 2.2 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b1307 | pspD | +0.6 | 1.4 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b2948 | yqgE | +0.6 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4042 | dgkA | +0.6 | 1.6 | diacylglycerol kinase (NCBI) | compare |
| b1433 | b1433 | +0.6 | 2.3 | putative membrane transport protein (VIMSS) | compare |
| b1696 | ydiP | +0.6 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1217 | chaB | +0.6 | 1.2 | cation transport regulator (NCBI) | compare |
| b1281 | pyrF | +0.6 | 2.1 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b2635 | ypjK | +0.6 | 2.3 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0431 | cyoB | +0.6 | 4.3 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b1476 | fdnI | +0.5 | 0.7 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1247 | oppF | +0.5 | 2.3 | oligopeptide transporter subunit (NCBI) | compare |
| b2586 | yfiM | +0.5 | 1.5 | predicted protein (RefSeq) | compare |
| b2286 | nuoC | +0.5 | 2.7 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2218 | rcsC | +0.5 | 4.3 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b3920 | yiiQ | +0.5 | 3.4 | hypothetical protein (NCBI) | compare |
| b2576 | srmB | +0.5 | 1.9 | ATP-dependent RNA helicase (NCBI) | compare |
| b4581 | ybeM | +0.5 | 2.5 | no description | compare |
| b0167 | glnD | +0.5 | 2.4 | PII uridylyl-transferase (NCBI) | compare |
| b3834 | yigP | +0.5 | 3.3 | hypothetical protein (NCBI) | compare |
| b4676 | yoaK | +0.5 | 0.4 | expressed protein (RefSeq) | compare |
| b3761 | trpT | +0.5 | 1.3 | tRNA-Trp (NCBI) | compare |
| b4532 | yncN | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1083 | flgL | +0.5 | 2.3 | flagellar hook-associated protein L (NCBI) | compare |
| b2071 | yegJ | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b3858 | yihD | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b2204 | napH | +0.5 | 2.1 | quinol dehydrogenase membrane component (NCBI) | compare |
| b4570 | lomR | +0.5 | 0.9 | no description | compare |
| b3742 | mioC | +0.5 | 2.9 | flavodoxin (NCBI) | compare |
| b2674 | nrdI | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b4585 | sroB | +0.5 | 0.9 | Novel sRNA, function unknown (RefSeq) | compare |
| b2445 | yffN | +0.5 | 1.7 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1726 | yniB | +0.5 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b1741 | ydjQ | +0.5 | 2.1 | endonuclease of nucleotide excision repair (NCBI) | compare |
| b2480 | bcp | +0.5 | 2.4 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b4502 | yeiW | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b2703 | srlE | +0.5 | 2.8 | glucitol/sorbitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b1012 | b1012 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3134 | agaW | +0.5 | 1.9 | N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene) (RefSeq) | compare |
| b2007 | yeeX | +0.5 | 0.9 | conserved protein (RefSeq) | compare |
| b4345 | mcrC | +0.5 | 0.6 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1242 | ychE | +0.5 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b1313 | ycjQ | +0.5 | 2.3 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b1013 | ycdC | +0.5 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3271 | yhdZ | +0.5 | 2.6 | predicted amino-acid transporter subunit (NCBI) | compare |
| b2700 | ygaD | +0.5 | 2.5 | competence damage-inducible protein A (NCBI) | compare |
| b3221 | yhcH | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b0146 | sfsA | +0.5 | 2.7 | sugar fermentation stimulation protein A (NCBI) | compare |
| b0226 | dinJ | +0.4 | 2.4 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1925 | fliS | +0.4 | 1.7 | flagellar protein FliS (NCBI) | compare |
| b4436 | ryeC | +0.4 | 0.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2276 | nuoN | +0.4 | 2.4 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b0746 | valZ | +0.4 | 1.6 | tRNA-Val (NCBI) | compare |
| b1486 | ddpB | +0.4 | 1.1 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1357 | ydaS | +0.4 | 1.1 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1138 | ymfE | +0.4 | 0.8 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b2469 | narQ | +0.4 | 3.1 | sensory histidine kinase in two-component regulatory system with NarP (NarL) (NCBI) | compare |
| b1908 | yecA | +0.4 | 1.9 | conserved metal-binding protein (NCBI) | compare |
| b1597 | asr | +0.4 | 1.9 | acid shock protein (VIMSS) | compare |
| b1286 | rnb | +0.4 | 1.2 | exoribonuclease II (NCBI) | compare |
| b1810 | yoaC | +0.4 | 2.6 | predicted protein (RefSeq) | compare |
| b2399 | yfeD | +0.4 | 2.3 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b4444 | rygA | +0.4 | 1.8 | unknown RNA (NCBI) | compare |
| b3537 | yhjT | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3427 | yzgL | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2287 | nuoB | +0.4 | 1.7 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1512 | lsrR | +0.4 | 1.9 | lsr operon transcriptional repressor (NCBI) | compare |
| b3210 | arcB | +0.4 | 2.7 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1569 | dicC | +0.4 | 1.0 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b0846 | ybjK | +0.4 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1837 | yebW | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3624 | rfaZ | +0.4 | 1.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2867 | xdhB | +0.4 | 2.3 | xanthine dehydrogenase, FAD-binding subunit (NCBI) | compare |
| b2300 | yfcE | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0806 | ybiM | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4207 | fklB | +0.4 | 2.4 | FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (VIMSS) | compare |
| b0102 | yacF | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b2040 | rfbD | +0.4 | 3.2 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b4227 | ytfQ | +0.4 | 2.3 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1489 | b1489 | +0.4 | 2.2 | putative enzyme (VIMSS) | compare |
| b1308 | pspE | +0.4 | 1.7 | thiosulfate:cyanide sulfurtransferase (rhodanese) (NCBI) | compare |
| b1917 | yecC | +0.4 | 1.1 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1475 | fdnH | +0.4 | 1.6 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b1456 | rhsE | +0.4 | 2.0 | rhsE element core protein RshE (RefSeq) | compare |
| b4234 | yjgA | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2561 | yfhH | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1171 | b1171 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4180 | rlmB | +0.4 | 2.5 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b3071 | yqjI | +0.4 | 1.8 | predicted transcriptional regulator (NCBI) | compare |
| b4613 | dinQ | +0.4 | 1.0 | Damage inducible, function unknown (RefSeq) | compare |
| b1450 | b1450 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1246 | oppD | +0.4 | 2.2 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b2506 | yfgI | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b1165 | ymgA | +0.4 | 0.2 | hypothetical protein (NCBI) | compare |
| b1839 | yebY | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1377 | ompN | +0.4 | 1.8 | outer membrane pore protein N, non-specific (NCBI) | compare |
| b2378 | ddg | +0.4 | 1.8 | putative heat shock protein (VIMSS) | compare |
| b0430 | cyoC | +0.4 | 1.8 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b3425 | glpE | +0.4 | 2.1 | thiosulfate sulfurtransferase (NCBI) | compare |
| b4381 | deoC | +0.4 | 1.7 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b1244 | oppB | +0.4 | 2.6 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b0934 | ycbM | +0.4 | 1.2 | putative transport system permease protein (VIMSS) | compare |
| b1948 | fliP | +0.4 | 1.6 | flagellar biosynthesis protein P (NCBI) | compare |
| b0225 | yafQ | +0.4 | 1.5 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b3810 | yigA | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b2969 | yghE | +0.4 | 1.6 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b4561 | insM | +0.4 | 1.9 | transposase (RefSeq) | compare |
| b0752 | zitB | +0.4 | 2.3 | zinc transporter ZitB (NCBI) | compare |
| b2443 | yffL | +0.4 | 1.7 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2481 | hyfA | +0.4 | 1.7 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b1161 | ycgX | +0.4 | 0.3 | hypothetical protein (NCBI) | compare |
| b2743 | pcm | +0.4 | 1.8 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b0964 | yccT | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |