Experiment set13IT013 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu0038 -6.2 -5.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -5.5 -11.1 acetolactate synthase III, large subunit compare
Atu0678 -5.3 -3.7 histidyl-tRNA synthetase compare
Atu0679 -4.5 -6.9 ATP phosphoribosyltransferase compare
Atu0115 -4.4 -1.4 hypothetical protein compare
Atu0039 -4.3 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1750 -4.2 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0041 -4.2 -2.5 glutamine amidotransferase compare
Atu3885 -4.1 -10.3 inositol monophosphatase compare
Atu4616 -4.0 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu6098 -4.0 -1.2 transcriptional regulator, HTH family compare
Atu1030 -3.8 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0537 -3.8 -7.7 histidinol dehydrogenase compare
Atu2439 -3.5 -1.5 hypothetical protein compare
Atu3730 -3.4 -2.0 hypothetical protein compare
Atu4711 -3.2 -6.8 two component sensor kinase compare
Atu3706 -3.2 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu2728 -3.1 -2.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0769 -2.9 -1.8 protoheme IX farnesyltransferase compare
Atu1021 -2.9 -2.7 outer membrane protein compare
Atu0977 -2.9 -4.2 serine protease DO-like protease compare
Atu0043 -2.9 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu3707 -2.8 -3.2 phosphoserine aminotransferase compare
Atu2522 -2.8 -13.4 agrobacterium chromosomal virulence protein B compare
Atu8167 -2.8 -11.0 putative transmembrane protein compare
Atu0971 -2.7 -1.9 two component sensor kinase compare
Atu2183 -2.7 -7.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3739 -2.7 -3.0 phosphoglycerate kinase compare
Atu1422 -2.7 -10.5 transcriptional regulator, MarR family compare
Atu4166 -2.7 -2.3 UDP-glucose 4-epimerase compare
Atu1588 -2.6 -9.4 homoserine dehydrogenase compare
Atu2040 -2.6 -5.4 phosphoserine phosphatase compare
Atu4773 -2.6 -1.5 two component response regulator compare
Atu4055 -2.5 -8.6 endo-1,3-1,4-beta-glycanase compare
Atu3908 -2.5 -5.1 GntR family transcriptional regulator compare
Atu0141 -2.4 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0026 -2.3 -1.0 hypothetical protein compare
Atu4072 -2.2 -1.5 nodulation protein N compare
Atu1354 -2.2 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2378 -2.2 -2.3 hypothetical protein compare
Atu4610 -2.1 -10.7 sugar nucleotide epimerase/dehydratase compare
Atu0434 -2.1 -2.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0050 -2.1 -5.7 two component response regulator compare
Atu0319 -2.1 -1.2 ubiquinone biosynthesis protein compare
Atu3469 -2.1 -3.0 phosphoglyceromutase compare
Atu0030 -2.1 -1.6 phosphocarrier protein HPr compare
Atu0999 -2.0 -6.1 magnesium transport protein compare
Atu4615 -2.0 -6.7 glucose-1-phosphate thymidylyltransferase compare
Atu2379 -2.0 -8.8 phosphomannomutase compare
Atu1705 -2.0 -5.0 SEC-independent protein translocase protein compare
Atu2433 -2.0 -1.3 hypothetical protein compare
Atu3353 -1.9 -9.9 mannose-1-phosphate guanylyltransferase compare
Atu4882 -1.9 -2.4 hypothetical protein compare
Atu0040 -1.9 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3311 -1.9 -7.9 phosphomannose isomerase compare
Atu2368 -1.9 -1.3 hypothetical protein compare
Atu3763 -1.9 -1.1 hypothetical protein compare
Atu0153 -1.8 -4.0 transcriptional regulator, Fur family compare
Atu4613 -1.8 -9.4 glycosyltransferase compare
Atu4502 -1.8 -5.8 cobalamin synthesis protein compare
Atu2057 -1.8 -2.6 DNA helicase II compare
Atu4618 -1.8 -6.3 dTDP-rhamnose-3,5-epimerase compare
Atu1364 -1.7 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4148 -1.7 -6.6 UDP-glucuronic acid epimerase compare
Atu1219 -1.7 -1.0 hypothetical protein compare
Atu0690 -1.7 -2.1 hypothetical protein compare
Atu0361 -1.7 -2.3 transcriptional regulator compare
Atu1163 -1.7 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2207 -1.7 -3.5 two component sensor kinase compare
Atu0647 -1.7 -4.7 phosphoribosylamine--glycine ligase compare
Atu2554 -1.6 -2.3 lysyl-tRNA synthetase compare
Atu0777 -1.6 -0.8 hypothetical protein compare
Atu4160 -1.6 -4.8 RNA polymerase sigma factor compare
Atu2052 -1.6 -5.0 hypothetical protein compare
Atu4162 -1.6 -7.0 two-component response regulator compare
Atu1141 -1.6 -3.6 Phosphoribosylglycinamide synthetase compare
Atu3754 -1.6 -4.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1327 -1.6 -2.4 NADH-ubiquinone oxidoreductase compare
Atu6021 -1.6 -8.8 D-nopaline dehydrogenase compare
Atu4617 -1.5 -6.1 dTDP-D-glucose-4,6-dehydratase compare
Atu4608 -1.5 -7.1 hypothetical protein compare
Atu0912 -1.5 -1.1 Na+/H+ antiporter compare
Atu0687 -1.5 -2.1 hypothetical protein compare
Atu4614 -1.5 -3.9 glycosyltransferase compare
Atu2163 -1.5 -1.3 hypothetical protein compare
Atu2650 -1.5 -7.1 glycerol-3-phosphate dehydrogenase compare
Atu2634 -1.5 -1.7 hypothetical protein compare
Atu2555 -1.5 -4.0 L-lysine 2,3-aminomutase compare
Atu1175 -1.5 -1.3 hypothetical protein compare
Atu0399 -1.5 -5.3 dihydroorotase compare
Atu1419 -1.5 -3.4 transcriptional regulator, GntR family compare
Atu0071 -1.5 -4.3 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu0499 -1.5 -5.7 hypothetical protein compare
Atu4505 -1.5 -5.5 LacI family transcriptional regulator compare
Atu3777 -1.5 -7.7 hypothetical protein compare
Atu0062 -1.5 -5.9 transcriptional regulator, ROK family compare
Atu1844 -1.5 -2.1 Phosphoribosylformylglycinamidine synthetase compare
Atu4609 -1.4 -6.6 glycosyltransferase compare
Atu1205 -1.4 -8.5 threonine dehydratase compare
Atu0184 -1.4 -2.4 glucokinase compare
Atu0640 -1.4 -2.1 hypothetical protein compare
Atu6020 -1.4 -4.9 conserved hypothetical protein compare
Atu2684 -1.4 -1.3 hypothetical protein compare
Atu6019 -1.4 -9.9 D-nopaline dehydrogenase compare
Atu8018 -1.4 -0.9 hypothetical protein compare
Atu1103 -1.4 -2.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1028 -1.3 -1.4 hypothetical protein compare
Atu4686 -1.3 -1.6 hypothetical protein compare
Atu6189 -1.3 -1.4 protein secretion chaperone compare
Atu4514 -1.3 -2.6 RpiR family transcriptional regulator compare
Atu1129 -1.3 -4.5 excinuclease ABC chain C compare
Atu0269 -1.3 -3.0 exodeoxyribonuclease VII large subunit compare
Atu3755 -1.3 -4.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0888 -1.3 -5.5 transcriptional regulator, MerR family compare
Atu3485 -1.3 -5.9 short chain dehydrogenase compare
Atu4144 -1.3 -1.0 hypothetical protein compare
Atu2217 -1.3 -3.6 hypothetical protein compare
Atu1026 -1.3 -1.6 hypothetical protein compare
Atu2270 -1.3 -1.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu1646 -1.3 -3.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1062 -1.3 -1.3 phosphatidylserine synthase compare
Atu1952 -1.3 -0.8 hypothetical protein compare
Atu2372 -1.3 -5.4 UDP-hexose transferase compare
Atu3162 -1.2 -6.1 LacI family transcriptional regulator compare
Atu3727 -1.2 -3.2 hypothetical protein compare
Atu1302 -1.2 -2.2 hypothetical protein compare
Atu8138 -1.2 -1.3 hypothetical protein compare
Atu4499 -1.2 -3.4 hypothetical protein compare
Atu2730 -1.2 -8.2 beta (1-->2) glucan biosynthesis protein compare
Atu5451 -1.2 -1.0 hypothetical protein compare
Atu0843 -1.2 -8.1 P type cation (metal) transporter, ATPase component compare
Atu1470 -1.2 -0.8 Camphor resistance protein compare
Atu0163 -1.2 -4.1 tonB protein compare
Atu6144 -1.2 -7.6 agrocinopine phosphodiesterase compare
Atu2058 -1.2 -2.5 hypothetical protein compare
Atu0422 -1.2 -1.3 ABC transporter, membrane spanning protein compare
Atu3791 -1.2 -5.1 L-asparaginase compare
Atu1075 -1.2 -4.0 amidophosphoribosyltransferase compare
Atu0189 -1.2 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu4346 -1.2 -4.2 hypothetical protein compare
Atu0161 -1.2 -6.3 biopolymer transport protein compare
Atu5045 -1.2 -2.0 hypothetical protein compare
Atu0070 -1.1 -5.2 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu2464 -1.1 -2.3 formyltetrahydrofolate deformylase compare
Atu2347 -1.1 -5.5 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu6131 -1.1 -3.8 TraR Antiactivator compare
Atu1039 -1.1 -2.5 DNA repair protein RecO compare
Atu1285 -1.1 -4.3 metal dependent hydrolase compare
Atu1810 -1.1 -0.8 hypothetical protein compare
Atu4896 -1.1 -1.3 acetyltransferase compare
Atu1589 -1.1 -4.0 aminotransferase, class I compare
Atu0486 -1.1 -2.7 dihydroorotate dehydrogenase compare
Atu1417 -1.1 -1.8 enoyl-CoA hydratase compare
Atu1236 -1.1 -5.4 polysaccharide biosynthesis glycosyltransferase compare
Atu0895 -1.1 -2.1 ABC transporter, substrate binding protein compare
Atu0025 -1.1 -1.9 hypothetical protein compare
Atu3466 -1.1 -1.8 ArsR family transcriptional regulator compare
Atu1127 -1.1 -1.5 molybdopterin converting factor small subunit compare
Atu0795 -1.1 -1.3 hypothetical protein compare
Atu2124 -1.1 -4.4 transcriptional regulator, ArsR family compare
Atu0978 -1.1 -3.9 two component response regulator compare
Atu1238 -1.1 -4.6 polysaccharide export protein compare
Atu3963 -1.1 -3.3 GntR family transcriptional regulator compare
Atu0953 -1.1 -0.9 hypothetical protein compare
Atu2373 -1.1 -4.7 UDP-hexose transferase compare
Atu1333 -1.1 -1.4 outer membrane protein compare
Atu1803 -1.1 -3.5 cold shock protein compare
Atu4018 -1.1 -5.5 two component sensor kinase compare
Atu1619 -1.1 -2.1 protein-export membrane protein SECG compare
Atu2192 -1.0 -1.0 hypothetical protein compare
Atu0536 -1.0 -3.2 hypothetical protein compare
Atu0298 -1.0 -4.6 orotidine 5 compare
Atu2827 -1.0 -2.2 hypothetical protein compare
Atu1845 -1.0 -2.3 phosphoribosylformylglycinamidine synthase I compare
Atu2346 -1.0 -6.8 ABC transporter, membrane spanning protein (sugar) compare
Atu3719 -1.0 -3.6 MutT/nudix family protein compare
Atu1647 -1.0 -4.7 ABC transporter, membrane spanning protein compare
Atu2125 -1.0 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0331 -1.0 -1.1 sigma-54 modulation protein compare
Atu1447 -1.0 -1.4 two component sensor kinase compare
Atu6145 -1.0 -5.4 arabinose phosphate phosphatase compare
Atu2832 -1.0 -2.9 tRNA modification GTPase compare
Atu1140 -1.0 -1.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3740 -1.0 -4.2 fructose bisphosphate aldolase compare
Atu2377 -1.0 -5.1 succinoglycan biosynthesis transport protein compare
Atu3461 -1.0 -1.2 GntR family transcriptional regulator compare
Atu2662 -1.0 -1.0 acetyltransferase compare
Atu2521 -1.0 -5.1 Protein regulated by acid pH compare
Atu3744 -1.0 -5.3 ABC transporter permease compare
Atu0972 -1.0 -3.3 lipA protein compare
Atu3718 -1.0 -4.2 hypothetical protein compare
Atu3732 -1.0 -5.0 hemolysin compare
Atu0630 -1.0 -1.1 hypothetical protein compare
Atu2001 -1.0 -4.5 excinuclease ABC subunit B compare
Atu1359 -1.0 -0.7 dnaK deletion suppressor protein compare
Atu1258 -1.0 -2.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu2289 -1.0 -6.3 anthranilate synthase component I and II compare
Atu0601 -0.9 -5.2 oxidoreductase compare
Atu0051 -0.9 -3.5 two component sensor kinase compare
Atu1099 -0.9 -2.8 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms