| | gene | name | fitness | t score | description | |
|---|
| b0247 | ykfG | -5.1 | -1.4 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2080 | b2080 | -4.2 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0998 | torD | -4.2 | -1.2 | chaperone protein TorD (NCBI) | compare |
| b1765 | ydjA | -3.8 | -1.1 | predicted oxidoreductase (NCBI) | compare |
| b2620 | smpB | -3.8 | -2.1 | SsrA-binding protein (NCBI) | compare |
| b3500 | gor | -3.7 | -2.5 | glutathione reductase (NCBI) | compare |
| b4589 | ylcI | -3.5 | -2.6 | hypothetical protein (RefSeq) | compare |
| b1575 | dicB | -3.5 | -1.9 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b2183 | rsuA | -3.2 | -3.2 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b1192 | ldcA | -3.1 | -4.9 | L,D-carboxypeptidase A (NCBI) | compare |
| b1573 | ydfC | -3.0 | -1.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b1480 | sra | -3.0 | -1.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b4481 | rffT | -3.0 | -6.7 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b4402 | yjjY | -2.9 | -1.2 | hypothetical protein (NCBI) | compare |
| b2642 | yfjW | -2.9 | -1.3 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1429 | tehA | -2.8 | -1.3 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b4699 | fnrS | -2.8 | -0.8 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b0726 | sucA | -2.8 | -4.2 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b0683 | fur | -2.8 | -1.9 | ferric uptake regulator (NCBI) | compare |
| b3443 | yrhA | -2.8 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2498 | upp | -2.7 | -1.9 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b0218 | yafU | -2.7 | -1.9 | predicted inner membrane protein (RefSeq) | compare |
| b1818 | manY | -2.7 | -2.0 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1950 | fliR | -2.7 | -1.8 | flagellar biosynthesis protein R (NCBI) | compare |
| b1506 | yneL | -2.7 | -1.8 | predicted transcriptional regulator (NCBI) | compare |
| b1412 | azoR | -2.6 | -1.6 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b1291 | sapD | -2.6 | -1.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2330 | yfcB | -2.6 | -1.8 | putative adenine-specific methylase (VIMSS) | compare |
| b4527 | b1354 | -2.6 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3794 | rffM | -2.5 | -5.6 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1754 | b1754 | -2.4 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2597 | yfiA | -2.4 | -1.6 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b2808 | gcvA | -2.3 | -3.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3791 | rffA | -2.3 | -6.7 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4503 | yafF | -2.3 | -0.9 | no description | compare |
| b0471 | ybaB | -2.3 | -3.1 | hypothetical protein (NCBI) | compare |
| b1164 | ycgZ | -2.3 | -1.2 | hypothetical protein (NCBI) | compare |
| b1194 | ycgR | -2.3 | -2.3 | protein involved in flagellar function (NCBI) | compare |
| b1709 | btuD | -2.3 | -0.8 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1334 | fnr | -2.2 | -2.3 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0782 | moaB | -2.1 | -1.6 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b0357 | yaiN | -2.1 | -1.3 | putative alpha helix chain (VIMSS) | compare |
| b2518 | ndk | -2.1 | -2.7 | nucleoside diphosphate kinase (NCBI) | compare |
| b0990 | cspG | -2.1 | -1.0 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1502 | ydeQ | -2.1 | -1.4 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0101 | yacG | -2.0 | -2.2 | zinc-binding protein (NCBI) | compare |
| b3229 | sspA | -2.0 | -3.3 | stringent starvation protein A (NCBI) | compare |
| b4146 | yjeK | -2.0 | -1.4 | predicted lysine aminomutase (NCBI) | compare |
| b1839 | yebY | -2.0 | -1.8 | hypothetical protein (NCBI) | compare |
| b4535 | yniD | -1.9 | -1.2 | predicted protein (RefSeq) | compare |
| b1332 | ynaJ | -1.9 | -0.7 | predicted inner membrane protein (NCBI) | compare |
| b4647 | mokA | -1.9 | -1.0 | no description | compare |
| b0688 | pgm | -1.9 | -3.8 | phosphoglucomutase (NCBI) | compare |
| b3790 | rffC | -1.9 | -3.2 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b1651 | gloA | -1.9 | -2.0 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b3029 | ygiN | -1.9 | -1.9 | quinol monooxygenase (NCBI) | compare |
| b3787 | rffD | -1.9 | -5.7 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1865 | nudB | -1.8 | -1.2 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1830 | prc | -1.8 | -4.1 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3228 | sspB | -1.8 | -3.6 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b2279 | nuoK | -1.8 | -1.4 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0232 | yafN | -1.7 | -0.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4533 | ynfO | -1.7 | -1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b3021 | ygiT | -1.7 | -1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4631 | ykgQ | -1.7 | -1.2 | no description | compare |
| b4394 | yjjX | -1.7 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4171 | miaA | -1.7 | -2.5 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3916 | pfkA | -1.7 | -1.1 | 6-phosphofructokinase (NCBI) | compare |
| b1730 | ydjO | -1.7 | -0.9 | predicted protein (RefSeq) | compare |
| b2433 | b2433 | -1.7 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1361 | ydaW | -1.7 | -0.4 | orf, hypothetical protein (VIMSS) | compare |
| b4451 | ryhB | -1.6 | -0.8 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0730 | mngR | -1.6 | -1.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0850 | ybjC | -1.6 | -1.6 | predicted inner membrane protein (NCBI) | compare |
| b3611 | yibN | -1.6 | -2.7 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b4418 | sraB | -1.6 | -1.4 | unknown RNA (NCBI) | compare |
| b0999 | cbpM | -1.6 | -1.7 | modulator of CbpA co-chaperone (NCBI) | compare |
| b1292 | sapC | -1.6 | -1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3977 | tyrU | -1.6 | -0.7 | tRNA-Tyr (NCBI) | compare |
| b1877 | yecT | -1.6 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b4618 | tisB | -1.6 | -1.6 | lexA-regulated toxic peptide (RefSeq) | compare |
| b2614 | grpE | -1.6 | -1.6 | heat shock protein (NCBI) | compare |
| b3784 | rfe | -1.6 | -6.2 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b4585 | sroB | -1.6 | -1.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b0888 | trxB | -1.5 | -2.2 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b2082 | ogrK | -1.5 | -2.1 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b1503 | ydeR | -1.5 | -3.0 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2136 | yohD | -1.5 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3792 | wzxE | -1.5 | -5.1 | O-antigen translocase (NCBI) | compare |
| b3613 | yibP | -1.5 | -3.4 | putative membrane protein (VIMSS) | compare |
| b1426 | ydcH | -1.5 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1777 | b1777 | -1.5 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4698 | mgrR | -1.5 | -2.2 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b1219 | ychN | -1.5 | -1.3 | hypothetical protein (NCBI) | compare |
| b1066 | rimJ | -1.5 | -3.2 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |
| b0746 | valZ | -1.4 | -1.7 | tRNA-Val (NCBI) | compare |
| b4546 | ypeB | -1.4 | -0.8 | hypothetical protein (NCBI) | compare |
| b3162 | deaD | -1.4 | -3.8 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2831 | mutH | -1.4 | -1.9 | DNA mismatch repair protein (NCBI) | compare |
| b0737 | tolQ | -1.4 | -1.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0550 | rusA | -1.4 | -2.0 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b3237 | argR | -1.4 | -2.7 | arginine repressor (NCBI) | compare |
| b1335 | ogt | -1.4 | -2.1 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b2567 | rnc | -1.4 | -0.8 | ribonuclease III (NCBI) | compare |
| b1594 | dgsA | -1.4 | -2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0773 | ybhB | -1.3 | -2.6 | predicted kinase inhibitor (NCBI) | compare |
| b1614 | ydgA | -1.3 | -2.1 | hypothetical protein (NCBI) | compare |
| b4057 | yjbR | -1.3 | -2.2 | hypothetical protein (NCBI) | compare |
| b3026 | qseC | -1.3 | -3.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3238 | yhcN | -1.3 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2726 | hypA | -1.3 | -1.9 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b4011 | yjaA | -1.3 | -2.4 | hypothetical protein (NCBI) | compare |
| b0889 | lrp | -1.3 | -1.5 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1600 | mdtJ | -1.3 | -0.9 | multidrug efflux system transporter (NCBI) | compare |
| b0974 | hyaC | -1.3 | -2.2 | hydrogenase 1, b-type cytochrome subunit (NCBI) | compare |
| b0937 | ssuE | -1.3 | -1.8 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b0200 | gmhB | -1.3 | -0.8 | hypothetical protein (NCBI) | compare |
| b4042 | dgkA | -1.3 | -1.8 | diacylglycerol kinase (NCBI) | compare |
| b2934 | cmtB | -1.3 | -0.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b4172 | hfq | -1.2 | -0.8 | RNA-binding protein Hfq (NCBI) | compare |
| b0740 | tolB | -1.2 | -3.0 | translocation protein TolB precursor (NCBI) | compare |
| b1370 | insH-5 | -1.2 | -1.1 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b1565 | ydfV | -1.2 | -2.4 | Qin prophage; predicted protein (NCBI) | compare |
| b1675 | ydhZ | -1.2 | -4.1 | hypothetical protein (NCBI) | compare |
| b1516 | lsrB | -1.2 | -1.6 | AI2 transporter (NCBI) | compare |
| b1183 | umuD | -1.2 | -1.2 | DNA polymerase V, subunit D (NCBI) | compare |
| b2912 | ygfA | -1.2 | -2.0 | putative ligase (VIMSS) | compare |
| b1931 | yedK | -1.2 | -2.4 | hypothetical protein (NCBI) | compare |
| b3786 | rffE | -1.2 | -5.5 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b4675 | yoaJ | -1.2 | -2.6 | expressed protein (RefSeq) | compare |
| b4458 | oxyS | -1.2 | -0.9 | global regulatory RNA (NCBI) | compare |
| b4594 | ymgJ | -1.2 | -1.5 | hypothetical protein (RefSeq) | compare |
| b2545 | yphC | -1.2 | -3.0 | putative oxidoreductase (VIMSS) | compare |
| b1299 | puuR | -1.2 | -2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1496 | yddA | -1.2 | -4.3 | fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI) | compare |
| b3198 | kdsC | -1.2 | -1.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b1671 | ydhX | -1.2 | -1.2 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1025 | ycdT | -1.2 | -0.8 | predicted diguanylate cyclase (NCBI) | compare |
| b1628 | rsxB | -1.2 | -1.9 | electron transport complex protein RnfB (NCBI) | compare |
| b4048 | yjbM | -1.2 | -0.8 | hypothetical protein (NCBI) | compare |
| b1803 | yeaX | -1.1 | -1.9 | predicted oxidoreductase (NCBI) | compare |
| b0467 | priC | -1.1 | -2.6 | primosomal replication protein N'' (NCBI) | compare |
| b0125 | hpt | -1.1 | -1.9 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b1855 | lpxM | -1.1 | -1.8 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4414 | tff | -1.1 | -1.5 | unknown RNA (NCBI) | compare |
| b1160 | elbA | -1.1 | -0.6 | hypothetical protein (NCBI) | compare |
| b2141 | yohJ | -1.1 | -1.2 | hypothetical protein (NCBI) | compare |
| b3361 | fic | -1.1 | -2.2 | stationary-phase protein, cell division (NCBI) | compare |
| b4184 | yjfL | -1.1 | -3.3 | conserved inner membrane protein (NCBI) | compare |
| b4608 | ryfC | -1.1 | -1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b4477 | dgoA | -1.1 | -2.5 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI) | compare |
| b1253 | yciA | -1.1 | -1.8 | predicted hydrolase (NCBI) | compare |
| b2237 | inaA | -1.1 | -1.4 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | -1.1 | -5.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2685 | emrA | -1.1 | -3.8 | multidrug efflux system (NCBI) | compare |
| b0187 | yaeR | -1.1 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3728 | pstS | -1.1 | -2.2 | phosphate transporter subunit (NCBI) | compare |
| b1782 | mipA | -1.1 | -2.5 | scaffolding protein for murein synthesizing machinery (NCBI) | compare |
| b4676 | yoaK | -1.1 | -0.4 | expressed protein (RefSeq) | compare |
| b1004 | wrbA | -1.1 | -2.1 | TrpR binding protein WrbA (NCBI) | compare |
| b2490 | b2490 | -1.0 | -0.9 | putative protein processing element (VIMSS) | compare |
| b1251 | yciI | -1.0 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0405 | queA | -1.0 | -2.1 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b1985 | yeeO | -1.0 | -3.4 | predicted multidrug efflux system (RefSeq) | compare |
| b1890 | motA | -1.0 | -1.7 | flagellar motor protein MotA (NCBI) | compare |
| b1382 | ynbE | -1.0 | -0.7 | predicted lipoprotein (NCBI) | compare |
| b3979 | thrT | -1.0 | -0.3 | tRNA-Thr (NCBI) | compare |
| b3778 | rep | -1.0 | -3.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2814 | metZ | -1.0 | -0.9 | tRNA-Met (NCBI) | compare |
| b1945 | fliM | -1.0 | -3.5 | flagellar motor switch protein M (NCBI) | compare |
| b1344 | ydaO | -1.0 | -1.7 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2564 | pdxJ | -1.0 | -2.0 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b1853 | yebK | -1.0 | -1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1527 | yneK | -1.0 | -1.3 | hypothetical protein (NCBI) | compare |
| b0844 | b0844 | -1.0 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b1322 | ycjF | -1.0 | -2.5 | hypothetical protein (NCBI) | compare |
| b0226 | dinJ | -1.0 | -1.8 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0630 | lipB | -1.0 | -1.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b0810 | glnP | -1.0 | -2.6 | glutamine ABC transporter permease protein (NCBI) | compare |
| b1090 | plsX | -1.0 | -2.2 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b1013 | ycdC | -1.0 | -1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2499 | purM | -0.9 | -1.7 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2354 | yfdK | -0.9 | -2.9 | CPS-53 (KpLE1) prophage; conserved protein (NCBI) | compare |
| b3163 | nlpI | -0.9 | -1.9 | hypothetical protein (NCBI) | compare |
| b1223 | narK | -0.9 | -1.6 | nitrate/nitrite transporter (NCBI) | compare |
| b4543 | ypaA | -0.9 | -1.5 | predicted protein (NCBI) | compare |
| b3563 | yiaB | -0.9 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b3706 | trmE | -0.9 | -2.9 | tRNA modification GTPase (NCBI) | compare |
| b4685 | yrbN | -0.9 | -1.5 | expressed protein (RefSeq) | compare |
| b1518 | lsrG | -0.9 | -0.8 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1357 | ydaS | -0.9 | -0.7 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2699 | recA | -0.9 | -0.6 | recombinase A (NCBI) | compare |
| b0217 | yafT | -0.9 | -2.2 | predicted aminopeptidase (NCBI) | compare |
| b4559 | yjdO | -0.9 | -2.7 | hypothetical protein (NCBI) | compare |
| b3024 | ygiW | -0.9 | -1.4 | hypothetical protein (NCBI) | compare |
| b2683 | ygaH | -0.9 | -2.5 | predicted inner membrane protein (NCBI) | compare |
| b1286 | rnb | -0.9 | -1.5 | exoribonuclease II (NCBI) | compare |
| b2537 | hcaR | -0.9 | -2.3 | DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism (NCBI) | compare |
| b1175 | minD | -0.9 | -2.2 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0976 | hyaE | -0.9 | -0.9 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |