| | gene | name | fitness | t score | description | |
|---|
| b2684 | mprA | +4.3 | 7.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0464 | acrR | +2.6 | 17.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0142 | folK | +2.2 | 1.4 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1861 | ruvA | +2.1 | 2.5 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b2531 | iscR | +1.7 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3341 | rpsG | +1.6 | 2.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b1103 | ycfF | +1.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0398 | sbcD | +1.6 | 9.4 | exonuclease, dsDNA, ATP-dependent (NCBI) | compare |
| b1150 | ymfR | +1.5 | 1.7 | e14 prophage; predicted protein (NCBI) | compare |
| b1362 | rzpR | +1.5 | 1.7 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1147 | ymfL | +1.5 | 2.4 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1882 | cheY | +1.5 | 0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4426 | isrA | +1.5 | 2.8 | unknown RNA (NCBI) | compare |
| b2285 | nuoE | +1.5 | 1.9 | NADH dehydrogenase subunit E (NCBI) | compare |
| b2356 | yfdM | +1.5 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b1613 | manA | +1.4 | 2.0 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1727 | yniC | +1.3 | 2.0 | predicted hydrolase (NCBI) | compare |
| b4592 | yccB | +1.3 | 1.7 | hypothetical protein (RefSeq) | compare |
| b2846 | yqeH | +1.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3844 | fre | +1.3 | 4.7 | NAD(P)H-flavin reductase (NCBI) | compare |
| b0880 | cspD | +1.3 | 2.9 | cold shock protein homolog (NCBI) | compare |
| b1462 | b1462 | +1.3 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b0881 | clpS | +1.2 | 2.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b4552 | yrhC | +1.2 | 1.2 | no description | compare |
| b3002 | yqhA | +1.2 | 1.9 | hypothetical protein (NCBI) | compare |
| b4416 | rybA | +1.2 | 1.6 | unknown RNA (NCBI) | compare |
| b0542 | renD | +1.2 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4144 | yjeI | +1.2 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b2945 | endA | +1.2 | 4.6 | DNA-specific endonuclease I (NCBI) | compare |
| b0082 | mraW | +1.2 | 3.4 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4313 | fimE | +1.1 | 6.3 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1138 | ymfE | +1.1 | 1.3 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b3636 | rpmG | +1.1 | 1.2 | 50S ribosomal protein L33 (NCBI) | compare |
| b1586 | b1586 | +1.1 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b2377 | yfdY | +1.1 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1961 | dcm | +1.1 | 0.8 | DNA cytosine methylase (NCBI) | compare |
| b4406 | yaeP | +1.1 | 1.8 | hypothetical protein (NCBI) | compare |
| b4431 | rprA | +1.1 | 1.4 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1524 | yneH | +1.1 | 1.0 | predicted glutaminase (NCBI) | compare |
| b1348 | lar | +1.1 | 1.3 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4480 | hdfR | +1.1 | 3.3 | transcriptional regulator HdfR (NCBI) | compare |
| b0957 | ompA | +1.1 | 2.8 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b1293 | sapB | +1.0 | 1.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1231 | tyrT | +1.0 | 0.7 | tRNA-Tyr (NCBI) | compare |
| b2143 | cdd | +1.0 | 1.8 | cytidine deaminase (NCBI) | compare |
| b4201 | priB | +1.0 | 2.0 | primosomal replication protein N (NCBI) | compare |
| b0927 | ycbL | +1.0 | 1.5 | predicted metal-binding enzyme (NCBI) | compare |
| b0397 | sbcC | +1.0 | 5.6 | exonuclease, dsDNA, ATP-dependent (NCBI) | compare |
| b4702 | mgtL | +1.0 | 1.9 | regulatory leader peptide for mgtA (NCBI) | compare |
| b4522 | yciX_1 | +1.0 | 1.2 | hypothetical protein (NCBI) | compare |
| b3504 | yhiS | +1.0 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1728 | ydjM | +1.0 | 1.6 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b2083 | yegZ | +1.0 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4163 | glyV | +1.0 | 1.6 | tRNA-Gly (NCBI) | compare |
| b4590 | ybfK | +1.0 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1547 | stfQ | +1.0 | 1.8 | Qin prophage; predicted side tail fibre assembly protein (NCBI) | compare |
| b1753 | ynjA | +1.0 | 1.3 | hypothetical protein (NCBI) | compare |
| b3204 | ptsN | +0.9 | 2.6 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b0222 | lpcA | +0.9 | 1.9 | phosphoheptose isomerase (NCBI) | compare |
| b0778 | bioD | +0.9 | 2.4 | dethiobiotin synthetase (NCBI) | compare |
| b3183 | obgE | +0.9 | 0.9 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0560 | nohB | +0.9 | 0.9 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b1735 | chbR | +0.9 | 2.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1841 | yobA | +0.9 | 1.5 | hypothetical protein (NCBI) | compare |
| b0597 | ybdB | +0.9 | 3.2 | hypothetical protein (NCBI) | compare |
| b1423 | ydcJ | +0.9 | 1.3 | hypothetical protein (NCBI) | compare |
| b4653 | yicT | +0.9 | 1.9 | no description | compare |
| b1085 | b1085 | +0.9 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1038 | csgF | +0.9 | 1.3 | predicted transport protein (NCBI) | compare |
| b1917 | yecC | +0.9 | 1.3 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0127 | yadG | +0.9 | 2.6 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2528 | iscA | +0.9 | 1.1 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b3280 | yrdB | +0.8 | 2.1 | hypothetical protein (NCBI) | compare |
| b4511 | ybdZ | +0.8 | 1.4 | hypothetical protein (NCBI) | compare |
| b2017 | yefM | +0.8 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1171 | b1171 | +0.8 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1520 | b1520 | +0.8 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3398 | yrfF | +0.8 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b2063 | yegH | +0.8 | 2.9 | putative transport protein (VIMSS) | compare |
| b1724 | ydiZ | +0.8 | 1.6 | hypothetical protein (NCBI) | compare |
| b0294 | ykgK | +0.8 | 2.4 | predicted regulator (NCBI) | compare |
| b4588 | ylcH | +0.8 | 1.9 | hypothetical protein, DLP12 prophage (RefSeq) | compare |
| b1233 | ychJ | +0.8 | 2.3 | hypothetical protein (NCBI) | compare |
| b0367 | tauC | +0.8 | 1.5 | taurine transporter subunit (NCBI) | compare |
| b3658 | selC | +0.8 | 1.5 | tRNA-Sec (NCBI) | compare |
| b4548 | ypjJ | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b3107 | yhaL | +0.8 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1920 | fliY | +0.8 | 2.0 | cystine transporter subunit (NCBI) | compare |
| b4536 | yobH | +0.8 | 1.6 | hypothetical protein (NCBI) | compare |
| b0225 | yafQ | +0.8 | 2.0 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1272 | sohB | +0.8 | 2.9 | predicted inner membrane peptidase (NCBI) | compare |
| b1837 | yebW | +0.8 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1581 | rspA | +0.8 | 1.8 | predicted dehydratase (NCBI) | compare |
| b2352 | yfdI | +0.8 | 1.0 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b0977 | hyaF | +0.8 | 2.4 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b3649 | rpoZ | +0.8 | 2.6 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0440 | hupB | +0.8 | 3.0 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b0249 | ykfF | +0.8 | 1.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1427 | rimL | +0.8 | 1.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b2423 | cysW | +0.8 | 2.3 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b2659 | b2659 | +0.8 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3813 | uvrD | +0.8 | 5.5 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b1692 | ydiB | +0.8 | 1.6 | quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b1821 | b1821 | +0.8 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4598 | yncL | +0.8 | 1.3 | hypothetical protein (RefSeq) | compare |
| b1259 | yciG | +0.8 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2509 | xseA | +0.8 | 3.5 | exodeoxyribonuclease VII large subunit (NCBI) | compare |
| b3390 | aroK | +0.8 | 1.1 | shikimate kinase I (NCBI) | compare |
| b1621 | malX | +0.8 | 2.0 | fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component (NCBI) | compare |
| b1465 | narV | +0.8 | 1.5 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1726 | yniB | +0.8 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b2859 | ygeO | +0.8 | 1.1 | hypothetical protein (RefSeq) | compare |
| b1918 | yecS | +0.7 | 1.8 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1954 | dsrA | +0.7 | 1.3 | regulatory antisense RNA (NCBI) | compare |
| b0839 | dacC | +0.7 | 3.2 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | compare |
| b2258 | b2258 | +0.7 | 0.7 | putative transport/receptor protein (VIMSS) | compare |
| b2263 | yfbB | +0.7 | 2.0 | predicted peptidase (NCBI) | compare |
| b4000 | hupA | +0.7 | 1.6 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b4436 | ryeC | +0.7 | 1.0 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2319 | usg | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b1495 | yddB | +0.7 | 3.3 | predicted porin protein (NCBI) | compare |
| b2027 | wzzB | +0.7 | 2.1 | regulator of length of O-antigen component of lipopolysaccharide chains (VIMSS) | compare |
| b1258 | yciF | +0.7 | 0.8 | hypothetical protein (NCBI) | compare |
| b3119 | tdcR | +0.7 | 1.2 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b0776 | bioF | +0.7 | 2.6 | 8-amino-7-oxononanoate synthase (NCBI) | compare |
| b2012 | yeeD | +0.7 | 1.5 | hypothetical protein (NCBI) | compare |
| b0131 | panD | +0.7 | 1.5 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b0965 | b0965 | +0.7 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2758 | ygcJ | +0.7 | 2.8 | hypothetical protein (NCBI) | compare |
| b0462 | acrB | +0.7 | 5.0 | multidrug efflux system protein (NCBI) | compare |
| b0852 | rimK | +0.7 | 1.6 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0530 | sfmA | +0.7 | 1.9 | putative fimbrial-like protein (VIMSS) | compare |
| b2135 | yohC | +0.7 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3349 | slyD | +0.7 | 2.8 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b0388 | aroL | +0.7 | 2.1 | shikimate kinase II (NCBI) | compare |
| b2398 | yfeC | +0.7 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1849 | purT | +0.7 | 2.5 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b3259 | prmA | +0.7 | 2.9 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b2301 | yfcF | +0.7 | 2.0 | predicted enzyme (NCBI) | compare |
| b4045 | yjbJ | +0.7 | 1.1 | predicted stress response protein (NCBI) | compare |
| b0015 | dnaJ | +0.7 | 3.0 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b2189 | proL | +0.7 | 0.8 | tRNA-Pro (NCBI) | compare |
| b0326 | yahL | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b0463 | acrA | +0.7 | 3.7 | multidrug efflux system (NCBI) | compare |
| b1936 | intG | +0.7 | 0.5 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1648 | b1648 | +0.7 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b4094 | phnN | +0.7 | 1.9 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b1664 | ydhQ | +0.7 | 2.2 | hypothetical protein (NCBI) | compare |
| b2583 | yfiP | +0.7 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b3101 | yqjF | +0.7 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2570 | rseC | +0.7 | 2.1 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b3889 | yiiE | +0.7 | 1.8 | predicted transcriptional regulator (RefSeq) | compare |
| b1800 | yeaU | +0.7 | 2.3 | predicted dehydrogenase (NCBI) | compare |
| b1359 | ydaU | +0.7 | 1.3 | Rac prophage; conserved protein (NCBI) | compare |
| b1523 | yneG | +0.7 | 0.9 | hypothetical protein (NCBI) | compare |
| b3781 | trxA | +0.7 | 1.9 | thioredoxin 1 (VIMSS) | compare |
| b1182 | hlyE | +0.7 | 0.7 | hemolysin E (VIMSS) | compare |
| b0295 | ykgL | +0.7 | 2.2 | hypothetical protein (NCBI) | compare |
| b0789 | ybhO | +0.7 | 2.1 | cardiolipin synthase 2 (NCBI) | compare |
| b2918 | argK | +0.7 | 1.9 | arginine/ornithine transport system ATPase (NCBI) | compare |
| b1124 | potC | +0.7 | 2.0 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b1843 | yobB | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b2025 | hisF | +0.6 | 1.6 | imidazole glycerol phosphate synthase subunit HisF (NCBI) | compare |
| b1263 | trpD | +0.6 | 0.8 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b2066 | udk | +0.6 | 1.2 | uridine/cytidine kinase (VIMSS) | compare |
| b1000 | cbpA | +0.6 | 2.4 | curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK (NCBI) | compare |
| b1463 | nhoA | +0.6 | 1.7 | N-hydroxyarylamine O-acetyltransferase (NCBI) | compare |
| b1526 | yneJ | +0.6 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0279 | yagM | +0.6 | 0.7 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0081 | mraZ | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b1588 | ynfF | +0.6 | 1.1 | oxidoreductase subunit (RefSeq) | compare |
| b1835 | yebU | +0.6 | 0.9 | putative nucleolar proteins (VIMSS) | compare |
| b0323 | yahI | +0.6 | 1.8 | predicted carbamate kinase-like protein (NCBI) | compare |
| b2577 | yfiE | +0.6 | 2.8 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1488 | ddpX | +0.6 | 1.1 | D-ala-D-ala dipeptidase, Zn-dependent (NCBI) | compare |
| b4692 | oweE | +0.6 | 1.1 | no description | compare |
| b1486 | ddpB | +0.6 | 0.7 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1983 | yeeN | +0.6 | 1.9 | hypothetical protein (NCBI) | compare |
| b3205 | yhbJ | +0.6 | 1.2 | hypothetical protein (NCBI) | compare |
| b1156 | tfaE | +0.6 | 2.2 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b0981 | yccC | +0.6 | 2.0 | cryptic autophosphorylating protein tyrosine kinase Etk (NCBI) | compare |
| b1519 | tam | +0.6 | 1.1 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b2741 | rpoS | +0.6 | 1.3 | RNA polymerase sigma factor (NCBI) | compare |
| b1418 | cybB | +0.6 | 1.6 | cytochrome b(561) (VIMSS) | compare |
| b1791 | yeaN | +0.6 | 1.3 | predicted transporter (NCBI) | compare |
| b3032 | cpdA | +0.6 | 2.3 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b0488 | ybbJ | +0.6 | 1.9 | conserved inner membrane protein (RefSeq) | compare |
| b2906 | visC | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b1900 | araG | +0.6 | 1.1 | fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1940 | fliH | +0.6 | 1.2 | flagellar biosynthesis; export of flagellar proteins? (VIMSS) | compare |
| b1832 | yebR | +0.6 | 1.6 | free methionine-(R)-sulfoxide reductase (RefSeq) | compare |
| b1358 | ydaT | +0.6 | 0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b1809 | b1809 | +0.6 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3617 | kbl | +0.6 | 2.4 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b2071 | yegJ | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b3663 | yicN | +0.6 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4644 | ypjI | +0.6 | 1.7 | no description | compare |
| b1266 | yciV | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b2904 | gcvH | +0.6 | 0.8 | glycine cleavage system protein H (NCBI) | compare |
| b0404 | yajB | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |