Experiment set13IT007 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.2 -3.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -4.5 -12.9 acetolactate synthase III, large subunit compare
Atu0679 -4.4 -6.7 ATP phosphoribosyltransferase compare
Atu0422 -4.3 -2.1 ABC transporter, membrane spanning protein compare
Atu3707 -4.2 -2.7 phosphoserine aminotransferase compare
Atu0041 -4.1 -2.3 glutamine amidotransferase compare
Atu1359 -4.0 -1.2 dnaK deletion suppressor protein compare
Atu0043 -3.9 -2.5 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -3.7 -7.9 histidinol dehydrogenase compare
Atu0678 -3.7 -6.7 histidyl-tRNA synthetase compare
Atu1030 -3.5 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1417 -3.4 -8.9 enoyl-CoA hydratase compare
Atu0421 -3.3 -1.4 ABC transporter, membrane spanning protein compare
Atu1588 -3.2 -8.7 homoserine dehydrogenase compare
Atu0038 -3.2 -4.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0153 -3.1 -5.4 transcriptional regulator, Fur family compare
Atu3908 -3.0 -11.8 GntR family transcriptional regulator compare
Atu2368 -3.0 -1.2 hypothetical protein compare
Atu2728 -3.0 -2.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0039 -3.0 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3706 -2.9 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu1028 -2.9 -1.5 hypothetical protein compare
Atu2017 -2.7 -1.1 hypothetical protein compare
Atu4317 -2.7 -2.8 TetR family transcriptional regulator compare
Atu0769 -2.7 -1.6 protoheme IX farnesyltransferase compare
Atu0030 -2.6 -1.7 phosphocarrier protein HPr compare
Atu1364 -2.6 -5.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu5540 -2.5 -1.4 hypothetical protein compare
Atu1470 -2.5 -1.0 Camphor resistance protein compare
Atu2125 -2.4 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3885 -2.4 -7.0 inositol monophosphatase compare
Atu4711 -2.4 -8.6 two component sensor kinase compare
Atu2040 -2.4 -3.1 phosphoserine phosphatase compare
Atu0141 -2.3 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu4166 -2.2 -1.9 UDP-glucose 4-epimerase compare
Atu2554 -2.2 -2.7 lysyl-tRNA synthetase compare
Atu1327 -2.2 -1.9 NADH-ubiquinone oxidoreductase compare
Atu2067 -2.2 -0.9 hypothetical protein compare
Atu2464 -2.1 -2.8 formyltetrahydrofolate deformylase compare
Atu6036 -2.1 -1.2 entry-exclusion protein compare
Atu0977 -2.1 -3.9 serine protease DO-like protease compare
Atu3429 -2.1 -1.5 hypothetical protein compare
Atu1422 -2.0 -6.1 transcriptional regulator, MarR family compare
Atu1952 -1.9 -1.4 hypothetical protein compare
Atu4072 -1.9 -1.5 nodulation protein N compare
Atu1163 -1.9 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0499 -1.8 -8.6 hypothetical protein compare
Atu0434 -1.8 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2052 -1.8 -5.2 hypothetical protein compare
Atu0319 -1.8 -1.1 ubiquinone biosynthesis protein compare
Atu0999 -1.8 -5.2 magnesium transport protein compare
Atu0115 -1.8 -1.0 hypothetical protein compare
Atu3763 -1.8 -1.0 hypothetical protein compare
Atu2183 -1.7 -6.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0482 -1.7 -4.9 polysaccharide deacetylase compare
Atu3755 -1.7 -4.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4162 -1.7 -6.1 two-component response regulator compare
Atu0184 -1.7 -2.3 glucokinase compare
Atu5125 -1.7 -3.6 GntR family transcriptional regulator compare
Atu2522 -1.6 -9.0 agrobacterium chromosomal virulence protein B compare
Atu0843 -1.6 -9.1 P type cation (metal) transporter, ATPase component compare
Atu1714 -1.6 -1.3 exonuclease III compare
Atu6098 -1.6 -0.8 transcriptional regulator, HTH family compare
Atu8167 -1.6 -6.8 putative transmembrane protein compare
Atu2249 -1.6 -1.0 hypothetical protein compare
Atu4610 -1.5 -5.9 sugar nucleotide epimerase/dehydratase compare
Atu2200 -1.5 -2.2 cold shock protein compare
Atu4616 -1.5 -1.4 dTDP-4-dehydrorhamnose reductase compare
Atu0971 -1.5 -2.4 two component sensor kinase compare
Atu2692 -1.5 -2.9 intracellular septation protein compare
Atu1238 -1.5 -5.8 polysaccharide export protein compare
Atu2373 -1.5 -7.4 UDP-hexose transferase compare
Atu1236 -1.5 -6.0 polysaccharide biosynthesis glycosyltransferase compare
Atu0894 -1.5 -2.3 ABC transporter, membrane spanning protein compare
Atu3730 -1.5 -1.1 hypothetical protein compare
Atu1683 -1.4 -1.3 hypothetical protein compare
Atu1103 -1.4 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3162 -1.4 -6.3 LacI family transcriptional regulator compare
Atu1644 -1.4 -2.7 hypothetical protein compare
Atu0888 -1.4 -4.9 transcriptional regulator, MerR family compare
Atu0784 -1.4 -1.9 hypothetical protein compare
Atu1810 -1.4 -0.8 hypothetical protein compare
Atu1570 -1.4 -0.7 hypothetical protein compare
Atu0647 -1.4 -4.6 phosphoribosylamine--glycine ligase compare
Atu4614 -1.4 -5.8 glycosyltransferase compare
Atu2163 -1.4 -1.0 hypothetical protein compare
Atu6020 -1.4 -4.0 conserved hypothetical protein compare
Atu4055 -1.4 -4.2 endo-1,3-1,4-beta-glycanase compare
Atu0659 -1.4 -5.4 NTP pyrophosphohydrolase, MutT family compare
Atu2207 -1.3 -2.1 two component sensor kinase compare
Atu0149 -1.3 -2.6 enoyl-(acyl-carrier-protein) reductase compare
Atu3732 -1.3 -6.6 hemolysin compare
Atu0361 -1.3 -1.8 transcriptional regulator compare
Atu2439 -1.3 -1.0 hypothetical protein compare
Atu1647 -1.3 -5.3 ABC transporter, membrane spanning protein compare
Atu0050 -1.3 -3.2 two component response regulator compare
Atu3754 -1.3 -2.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2442 -1.3 -2.0 hypothetical protein compare
Atu0040 -1.3 -0.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4171 -1.3 -5.1 cold-shock dead-box protein A compare
Atu0062 -1.3 -6.8 transcriptional regulator, ROK family compare
Atu8138 -1.3 -0.9 hypothetical protein compare
Atu0400 -1.3 -2.8 orotate phosphoribosyltransferase compare
Atu2484 -1.3 -1.2 hypothetical protein compare
Atu2352 -1.3 -1.4 hypothetical protein compare
Atu1354 -1.3 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1679 -1.2 -1.6 peptidyl prolyl cis-trans isomerase compare
Atu1619 -1.2 -1.7 protein-export membrane protein SECG compare
Atu2370 -1.2 -5.4 hypothetical protein compare
Atu2555 -1.2 -2.3 L-lysine 2,3-aminomutase compare
Atu4685 -1.2 -4.7 LacI family transcriptional regulator compare
Atu1589 -1.2 -4.0 aminotransferase, class I compare
Atu2377 -1.2 -7.0 succinoglycan biosynthesis transport protein compare
Atu3727 -1.2 -3.0 hypothetical protein compare
Atu1075 -1.2 -3.2 amidophosphoribosyltransferase compare
Atu3777 -1.2 -4.6 hypothetical protein compare
Atu2193 -1.2 -0.7 hypothetical protein compare
Atu1850 -1.2 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu4677 -1.2 -1.3 hypothetical protein compare
Atu4609 -1.2 -6.1 glycosyltransferase compare
Atu3750 -1.2 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu2730 -1.2 -8.0 beta (1-->2) glucan biosynthesis protein compare
Atu6021 -1.1 -7.7 D-nopaline dehydrogenase compare
Atu1445 -1.1 -2.6 two component sensor kinase compare
Atu1844 -1.1 -2.0 Phosphoribosylformylglycinamidine synthetase compare
Atu1419 -1.1 -2.3 transcriptional regulator, GntR family compare
Atu0677 -1.1 -1.2 hypothetical protein compare
Atu3469 -1.1 -1.8 phosphoglyceromutase compare
Atu2684 -1.1 -1.0 hypothetical protein compare
Atu2807 -1.1 -4.1 cob(I)alamin adenosyltransferase compare
Atu8088 -1.1 -1.2 hypothetical protein compare
Atu1447 -1.1 -1.6 two component sensor kinase compare
Atu1307 -1.1 -3.1 dihydroorotase compare
Atu1705 -1.1 -3.0 SEC-independent protein translocase protein compare
Atu0354 -1.1 -1.7 ferric uptake regulator compare
Atu0923 -1.1 -3.5 hypothetical protein compare
Atu1838 -1.1 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu4144 -1.1 -0.9 hypothetical protein compare
Atu3485 -1.1 -5.4 short chain dehydrogenase compare
Atu0272 -1.1 -3.1 transcriptional regulator, MarR family compare
Atu1803 -1.1 -4.2 cold shock protein compare
Atu1225 -1.1 -1.1 hypothetical protein compare
Atu0413 -1.1 -1.7 stress induced protein compare
Atu3009 -1.1 -0.9 exopolysaccharide production protein compare
Atu6019 -1.1 -7.0 D-nopaline dehydrogenase compare
Atu1052 -1.1 -2.1 hypothetical protein compare
Atu4148 -1.1 -4.0 UDP-glucuronic acid epimerase compare
Atu0978 -1.1 -4.1 two component response regulator compare
Atu3353 -1.0 -4.9 mannose-1-phosphate guanylyltransferase compare
Atu1205 -1.0 -6.5 threonine dehydratase compare
Atu8143 -1.0 -2.3 hypothetical protein compare
Atu3609 -1.0 -2.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4514 -1.0 -2.1 RpiR family transcriptional regulator compare
Atu3219 -1.0 -6.2 dihydroxy-acid dehydratase compare
Atu6189 -1.0 -1.1 protein secretion chaperone compare
Atu5464 -1.0 -5.5 IclR family transcriptional regulator compare
Atu4608 -1.0 -5.8 hypothetical protein compare
Atu4093 -1.0 -2.5 hypothetical protein compare
Atu2662 -1.0 -0.9 acetyltransferase compare
Atu2584 -1.0 -3.8 hypothetical protein compare
Atu4618 -1.0 -4.5 dTDP-rhamnose-3,5-epimerase compare
Atu1851 -1.0 -1.2 BolA/YrbA family protein compare
Atu1667 -1.0 -1.0 hypothetical protein compare
Atu0399 -1.0 -2.0 dihydroorotase compare
Atu5164 -1.0 -0.8 type IV secretion protein AvhB3 compare
Atu0071 -1.0 -3.9 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu3794 -1.0 -3.8 FadR family transcriptional regulator compare
Atu1076 -1.0 -2.3 colicin V production protein compare
Atu5517 -1.0 -3.1 hypothetical protein compare
Atu0781 -1.0 -2.0 hypothetical protein compare
Atu3963 -1.0 -3.7 GntR family transcriptional regulator compare
Atu1141 -1.0 -2.2 Phosphoribosylglycinamide synthetase compare
Atu4499 -0.9 -2.2 hypothetical protein compare
Atu3718 -0.9 -3.5 hypothetical protein compare
Atu5173 -0.9 -2.2 dehydrogenase compare
Atu8154 -0.9 -1.5 Plasmid stabilization system protein compare
Atu2375 -0.9 -3.0 UDP-hexose transferase compare
Atu0565 -0.9 -1.8 hypothetical protein compare
Atu1847 -0.9 -1.0 hypothetical protein compare
Atu1845 -0.9 -1.5 phosphoribosylformylglycinamidine synthase I compare
Atu3744 -0.9 -4.8 ABC transporter permease compare
Atu0658 -0.9 -4.2 phosphate permease compare
Atu4617 -0.9 -5.8 dTDP-D-glucose-4,6-dehydratase compare
Atu2650 -0.9 -4.8 glycerol-3-phosphate dehydrogenase compare
Atu8159 -0.9 -1.3 hypothetical protein compare
Atu3311 -0.9 -6.0 phosphomannose isomerase compare
Atu1149 -0.9 -1.0 adenylate cyclase compare
Atu0544 -0.9 -1.2 hypothetical protein compare
Atu2372 -0.9 -3.9 UDP-hexose transferase compare
Atu0296 -0.9 -2.7 NADH-ubiquinone oxidoreductase compare
Atu2787 -0.9 -0.6 hypothetical protein compare
Atu4613 -0.9 -5.8 glycosyltransferase compare
Atu4149 -0.9 -5.8 UDP-glucose 6-dehydrogenase compare
Atu0049 -0.9 -2.0 hypothetical protein compare
Atu1518 -0.9 -2.0 transcriptional regulator, Fur family compare
Atu1009 -0.9 -1.4 hypothetical protein compare
Atu2832 -0.9 -1.1 tRNA modification GTPase compare
Atu0029 -0.9 -2.9 S-adenosylhomocysteine hydrolase compare
Atu3554 -0.9 -2.0 hypothetical protein compare
Atu4599 -0.9 -3.8 IclR family transcriptional regulator compare


Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms