Experiment set13IT006 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1417 -5.1 -8.6 enoyl-CoA hydratase compare
Atu1359 -4.5 -1.9 dnaK deletion suppressor protein compare
Atu1030 -4.2 -2.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0331 -4.2 -4.9 sigma-54 modulation protein compare
Atu6098 -4.0 -1.7 transcriptional regulator, HTH family compare
Atu2439 -3.7 -2.2 hypothetical protein compare
Atu2036 -3.4 -14.6 acetolactate synthase III, large subunit compare
Atu0039 -3.3 -3.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu3908 -3.2 -13.4 GntR family transcriptional regulator compare
Atu0679 -3.0 -6.7 ATP phosphoribosyltransferase compare
Atu3707 -2.8 -3.8 phosphoserine aminotransferase compare
Atu0038 -2.8 -4.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0678 -2.7 -7.7 histidyl-tRNA synthetase compare
Atu2728 -2.6 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu3706 -2.6 -8.0 D-3-phosphoglycerate dehydrogenase compare
Atu1422 -2.6 -11.7 transcriptional regulator, MarR family compare
Atu2040 -2.4 -5.7 phosphoserine phosphatase compare
Atu0999 -2.3 -8.3 magnesium transport protein compare
Atu0537 -2.2 -7.2 histidinol dehydrogenase compare
Atu0043 -2.2 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu0141 -2.2 -2.5 cytochrome O ubiquinol oxidase subunit I compare
Atu1750 -2.2 -4.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu0977 -2.2 -3.5 serine protease DO-like protease compare
Atu0876 -2.1 -2.8 superoxide dismutase compare
Atu0040 -2.1 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4711 -2.0 -7.4 two component sensor kinase compare
Atu2125 -2.0 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4317 -1.9 -3.6 TetR family transcriptional regulator compare
Atu0499 -1.8 -8.7 hypothetical protein compare
Atu1588 -1.8 -7.1 homoserine dehydrogenase compare
Atu4896 -1.8 -2.5 acetyltransferase compare
Atu0041 -1.8 -2.2 glutamine amidotransferase compare
Atu4773 -1.7 -2.2 two component response regulator compare
Atu1705 -1.7 -4.6 SEC-independent protein translocase protein compare
Atu3754 -1.7 -6.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3755 -1.7 -5.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1364 -1.7 -6.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2522 -1.7 -9.4 agrobacterium chromosomal virulence protein B compare
Atu0030 -1.6 -2.3 phosphocarrier protein HPr compare
Atu1447 -1.6 -2.1 two component sensor kinase compare
Atu0086 -1.6 -1.3 ribosome-binding factor A compare
Atu3763 -1.6 -1.4 hypothetical protein compare
Atu4610 -1.5 -8.2 sugar nucleotide epimerase/dehydratase compare
Atu0434 -1.5 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4166 -1.5 -2.2 UDP-glucose 4-epimerase compare
Atu2163 -1.5 -1.9 hypothetical protein compare
Atu0062 -1.5 -8.6 transcriptional regulator, ROK family compare
Atu0482 -1.5 -7.0 polysaccharide deacetylase compare
Atu8167 -1.5 -7.4 putative transmembrane protein compare
Atu1238 -1.4 -7.7 polysaccharide export protein compare
Atu1902 -1.4 -5.1 transketolase compare
Atu1028 -1.4 -2.9 hypothetical protein compare
Atu3598 -1.4 -1.3 thiol:disulfide interchange protein compare
Atu3485 -1.4 -7.6 short chain dehydrogenase compare
Atu3885 -1.4 -5.8 inositol monophosphatase compare
Atu0071 -1.4 -7.3 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2377 -1.3 -9.3 succinoglycan biosynthesis transport protein compare
Atu3730 -1.3 -2.1 hypothetical protein compare
Atu2464 -1.3 -2.8 formyltetrahydrofolate deformylase compare
Atu0843 -1.3 -10.4 P type cation (metal) transporter, ATPase component compare
Atu2375 -1.3 -4.0 UDP-hexose transferase compare
Atu3469 -1.3 -2.6 phosphoglyceromutase compare
Atu1236 -1.3 -6.6 polysaccharide biosynthesis glycosyltransferase compare
Atu0184 -1.2 -3.0 glucokinase compare
Atu4162 -1.2 -7.9 two-component response regulator compare
Atu1419 -1.2 -5.7 transcriptional regulator, GntR family compare
Atu2052 -1.2 -4.8 hypothetical protein compare
Atu2207 -1.2 -2.6 two component sensor kinase compare
Atu3739 -1.2 -2.4 phosphoglycerate kinase compare
Atu0971 -1.2 -2.9 two component sensor kinase compare
Atu1446 -1.2 -1.3 two component response regulator compare
Atu3777 -1.2 -6.6 hypothetical protein compare
Atu1075 -1.2 -5.4 amidophosphoribosyltransferase compare
Atu8138 -1.2 -1.8 hypothetical protein compare
Atu4217 -1.2 -1.1 TetR family transcriptional regulator compare
Atu0070 -1.2 -7.7 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu3910 -1.2 -4.5 LamB/YcsF family protein compare
Atu6021 -1.1 -7.9 D-nopaline dehydrogenase compare
Atu2484 -1.1 -1.5 hypothetical protein compare
Atu1141 -1.1 -5.1 Phosphoribosylglycinamide synthetase compare
Atu2201 -1.1 -2.8 hydrolase compare
Atu0050 -1.1 -4.4 two component response regulator compare
Atu0647 -1.1 -4.7 phosphoribosylamine--glycine ligase compare
Atu6020 -1.1 -4.3 conserved hypothetical protein compare
Atu1803 -1.1 -5.8 cold shock protein compare
Atu0153 -1.1 -4.5 transcriptional regulator, Fur family compare
Atu1679 -1.1 -2.7 peptidyl prolyl cis-trans isomerase compare
Atu2650 -1.1 -7.4 glycerol-3-phosphate dehydrogenase compare
Atu0319 -1.1 -1.3 ubiquinone biosynthesis protein compare
Atu3219 -1.1 -6.6 dihydroxy-acid dehydratase compare
Atu4888 -1.1 -3.3 hypothetical protein compare
Atu3732 -1.1 -6.7 hemolysin compare
Atu4148 -1.0 -3.4 UDP-glucuronic acid epimerase compare
Atu1205 -1.0 -7.0 threonine dehydratase compare
Atu1810 -1.0 -1.2 hypothetical protein compare
Atu2373 -1.0 -5.5 UDP-hexose transferase compare
Atu1307 -1.0 -3.9 dihydroorotase compare
Atu1468 -1.0 -6.0 hypothetical protein compare
Atu1619 -1.0 -2.3 protein-export membrane protein SECG compare
Atu0029 -1.0 -3.4 S-adenosylhomocysteine hydrolase compare
Atu1685 -1.0 -1.2 hypothetical protein compare
Atu0149 -1.0 -2.5 enoyl-(acyl-carrier-protein) reductase compare
Atu1687 -1.0 -6.2 anthranilate phosphoribosyltransferase compare
Atu2790 -1.0 -2.6 3-isopropylmalate dehydratase, small subunit compare
Atu1175 -1.0 -1.6 hypothetical protein compare
Atu0486 -1.0 -3.5 dihydroorotate dehydrogenase compare
Atu4061 -1.0 -3.0 exopolysaccharide production repressor protein compare
Atu0354 -1.0 -1.9 ferric uptake regulator compare
Atu1845 -1.0 -3.1 phosphoribosylformylglycinamidine synthase I compare
Atu2372 -1.0 -5.5 UDP-hexose transferase compare
Atu0026 -1.0 -0.9 hypothetical protein compare
Atu0422 -1.0 -2.0 ABC transporter, membrane spanning protein compare
Atu0051 -1.0 -3.3 two component sensor kinase compare
Atu4502 -1.0 -5.2 cobalamin synthesis protein compare
Atu2585 -1.0 -4.3 hypothetical protein compare
Atu0888 -1.0 -4.2 transcriptional regulator, MerR family compare
Atu4882 -1.0 -2.2 hypothetical protein compare
Atu3162 -1.0 -5.7 LacI family transcriptional regulator compare
Atu0017 -1.0 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1149 -1.0 -1.8 adenylate cyclase compare
Atu2378 -0.9 -2.2 hypothetical protein compare
Atu0401 -0.9 -5.1 fructokinase compare
Atu1021 -0.9 -2.2 outer membrane protein compare
Atu2821 -0.9 -3.3 transcriptional regulator, GntR family compare
Atu1258 -0.9 -2.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu4879 -0.9 -4.3 hypothetical protein compare
Atu2017 -0.9 -0.9 hypothetical protein compare
Atu2289 -0.9 -7.3 anthranilate synthase component I and II compare
Atu0101 -0.9 -4.3 cytochrome c compare
Atu2730 -0.9 -7.2 beta (1-->2) glucan biosynthesis protein compare
Atu0601 -0.9 -5.1 oxidoreductase compare
Atu6019 -0.9 -7.1 D-nopaline dehydrogenase compare
Atu0031 -0.9 -1.1 PTS system, IIA component compare
Atu3963 -0.9 -3.7 GntR family transcriptional regulator compare
Atu1850 -0.9 -2.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2718 -0.9 -5.0 homoserine O-succinyltransferase compare
Atu0976 -0.9 -2.5 cycL protein compare
Atu0188 -0.9 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu4609 -0.9 -6.5 glycosyltransferase compare
Atu2831 -0.9 -3.2 glucose inhibited division protein A compare
Atu2370 -0.9 -4.6 hypothetical protein compare
Atu3718 -0.9 -4.6 hypothetical protein compare
Atu2555 -0.9 -3.2 L-lysine 2,3-aminomutase compare
Atu1589 -0.9 -3.6 aminotransferase, class I compare
Atu1644 -0.9 -1.6 hypothetical protein compare
Atu4446 -0.9 -4.0 hypothetical protein compare
Atu0361 -0.9 -1.8 transcriptional regulator compare
Atu2722 -0.8 -3.7 porin compare
Atu1467 -0.8 -2.1 hypothetical protein compare
Atu1163 -0.8 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5470 -0.8 -1.1 hypothetical protein compare
Atu2192 -0.8 -1.3 hypothetical protein compare
Atu3971 -0.8 -6.4 dihydroxy-acid dehydratase compare
Atu5125 -0.8 -3.1 GntR family transcriptional regulator compare
Atu1327 -0.8 -2.0 NADH-ubiquinone oxidoreductase compare
Atu4346 -0.8 -2.8 hypothetical protein compare
Atu4608 -0.8 -6.1 hypothetical protein compare
Atu4160 -0.8 -4.2 RNA polymerase sigma factor compare
Atu1077 -0.8 -2.6 DNA repair protein compare
Atu0025 -0.8 -1.4 hypothetical protein compare
Atu3017 -0.8 -1.1 phosphoglyceromutase compare
Atu1534 -0.8 -4.4 cytochrome-c oxidase, FixP chain compare
Atu3015 -0.8 -3.8 hypothetical protein compare
Atu1688 -0.8 -2.9 indole-3-glycerol-phosphate synthase compare
Atu1714 -0.8 -1.3 exonuclease III compare
Atu4618 -0.8 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu2369 -0.8 -5.3 Hypothetical Protein compare
Atu4171 -0.8 -4.1 cold-shock dead-box protein A compare
Atu4223 -0.8 -1.7 sarcosine oxidase delta subunit compare
Atu1074 -0.8 -4.5 NAD/NADP dependent oxidoreductase compare
Atu2264 -0.8 -5.3 2-isopropylmalate synthase compare
Atu1503 -0.8 -1.1 hypothetical protein compare
Atu2237 -0.8 -3.3 cytochrome c1 compare
Atu1838 -0.8 -2.0 ABC transporter, substrate binding protein (amino acid) compare
Atu1646 -0.8 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu6131 -0.8 -3.1 TraR Antiactivator compare
Atu4514 -0.8 -3.1 RpiR family transcriptional regulator compare
Atu1739 -0.8 -1.9 permease compare
Atu2532 -0.8 -2.5 transcriptional regulator, MarR family compare
Atu8082 -0.8 -1.8 hypothetical protein compare
Atu0421 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu0677 -0.8 -1.9 hypothetical protein compare
Atu2010 -0.7 -5.0 GGDEF family protein compare
Atu0972 -0.7 -4.1 lipA protein compare
Atu3727 -0.7 -2.7 hypothetical protein compare
Atu2554 -0.7 -1.5 lysyl-tRNA synthetase compare
Atu2709 -0.7 -5.7 3-isopropylmalate dehydratase, large subunit compare
Atu2352 -0.7 -1.7 hypothetical protein compare
Atu1642 -0.7 -1.6 hypothetical protein compare
Atu1904 -0.7 -1.7 transcriptional regulator compare
Atu0636 -0.7 -2.9 hypothetical protein compare
Atu0400 -0.7 -1.7 orotate phosphoribosyltransferase compare
Atu0432 -0.7 -4.0 O-succinylhomoserine sulfhydrylase compare
Atu8094 -0.7 -2.2 hypothetical protein compare
Atu1513 -0.7 -2.9 ABC excinuclease subunit A compare
Atu2238 -0.7 -4.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu8032 -0.7 -1.7 hypothetical protein compare
Atu2802 -0.7 -4.5 precorrin-8X methylmutase compare
Atu3183 -0.7 -0.8 hypothetical protein compare
Atu3776 -0.7 -1.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms