Experiment set13IT005 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu0038 -5.6 -5.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0679 -4.9 -5.8 ATP phosphoribosyltransferase compare
Atu3730 -4.6 -2.8 hypothetical protein compare
Atu2125 -4.5 -2.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu2036 -4.4 -14.3 acetolactate synthase III, large subunit compare
Atu0039 -4.3 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu4616 -4.3 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu0041 -4.1 -2.8 glutamine amidotransferase compare
Atu0537 -3.9 -6.5 histidinol dehydrogenase compare
Atu1750 -3.9 -3.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0977 -3.6 -4.9 serine protease DO-like protease compare
Atu1030 -3.6 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu6098 -3.6 -1.3 transcriptional regulator, HTH family compare
Atu3706 -3.5 -9.0 D-3-phosphoglycerate dehydrogenase compare
Atu0678 -3.5 -5.8 histidyl-tRNA synthetase compare
Atu1588 -3.3 -8.4 homoserine dehydrogenase compare
Atu0043 -3.3 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu3908 -3.2 -11.9 GntR family transcriptional regulator compare
Atu2728 -3.1 -2.1 beta (1-->2) glucan export ATP-binding protein compare
Atu1417 -3.1 -7.8 enoyl-CoA hydratase compare
Atu0030 -2.9 -2.1 phosphocarrier protein HPr compare
Atu4773 -2.9 -1.5 two component response regulator compare
Atu0769 -2.7 -1.8 protoheme IX farnesyltransferase compare
Atu0040 -2.7 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0184 -2.6 -3.9 glucokinase compare
Atu1714 -2.6 -1.9 exonuclease III compare
Atu0331 -2.6 -2.8 sigma-54 modulation protein compare
Atu0912 -2.6 -1.3 Na+/H+ antiporter compare
Atu1364 -2.5 -6.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1422 -2.5 -8.1 transcriptional regulator, MarR family compare
Atu3885 -2.5 -9.5 inositol monophosphatase compare
Atu1470 -2.5 -1.2 Camphor resistance protein compare
Atu3469 -2.4 -3.3 phosphoglyceromutase compare
Atu2040 -2.3 -4.8 phosphoserine phosphatase compare
Atu0153 -2.3 -3.8 transcriptional regulator, Fur family compare
Atu0086 -2.2 -1.1 ribosome-binding factor A compare
Atu3712 -2.2 -2.3 hypothetical protein compare
Atu3486 -2.2 -2.1 DeoR family transcriptional regulator compare
Atu1705 -2.1 -4.8 SEC-independent protein translocase protein compare
Atu0999 -2.1 -7.1 magnesium transport protein compare
Atu4711 -2.1 -6.4 two component sensor kinase compare
Atu3707 -2.1 -2.2 phosphoserine aminotransferase compare
Atu2183 -2.0 -7.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0971 -2.0 -2.3 two component sensor kinase compare
Atu2052 -1.9 -5.1 hypothetical protein compare
Atu4610 -1.9 -11.5 sugar nucleotide epimerase/dehydratase compare
Atu2522 -1.8 -10.7 agrobacterium chromosomal virulence protein B compare
Atu1359 -1.8 -1.1 dnaK deletion suppressor protein compare
Atu3732 -1.8 -8.5 hemolysin compare
Atu2249 -1.8 -1.3 hypothetical protein compare
Atu8167 -1.8 -9.0 putative transmembrane protein compare
Atu0354 -1.8 -2.2 ferric uptake regulator compare
Atu1327 -1.8 -2.5 NADH-ubiquinone oxidoreductase compare
Atu0499 -1.7 -7.0 hypothetical protein compare
Atu2375 -1.7 -6.4 UDP-hexose transferase compare
Atu1952 -1.7 -1.3 hypothetical protein compare
Atu3162 -1.7 -6.8 LacI family transcriptional regulator compare
Atu5125 -1.6 -4.6 GntR family transcriptional regulator compare
Atu8012 -1.6 -1.6 hypothetical protein compare
Atu1419 -1.6 -3.7 transcriptional regulator, GntR family compare
Atu0280 -1.6 -1.9 hypothetical protein compare
Atu4317 -1.6 -2.7 TetR family transcriptional regulator compare
Atu0843 -1.6 -9.2 P type cation (metal) transporter, ATPase component compare
Atu0422 -1.5 -1.7 ABC transporter, membrane spanning protein compare
Atu3353 -1.5 -7.1 mannose-1-phosphate guanylyltransferase compare
Atu0031 -1.5 -1.2 PTS system, IIA component compare
Atu1803 -1.5 -5.8 cold shock protein compare
Atu2057 -1.5 -2.3 DNA helicase II compare
Atu4618 -1.5 -8.1 dTDP-rhamnose-3,5-epimerase compare
Atu0482 -1.5 -5.4 polysaccharide deacetylase compare
Atu1754 -1.5 -1.5 hypothetical protein compare
Atu3311 -1.5 -8.3 phosphomannose isomerase compare
Atu2200 -1.4 -2.7 cold shock protein compare
Atu0876 -1.4 -1.8 superoxide dismutase compare
Atu1238 -1.4 -6.9 polysaccharide export protein compare
Atu4617 -1.4 -8.2 dTDP-D-glucose-4,6-dehydratase compare
Atu2692 -1.4 -3.8 intracellular septation protein compare
Atu0659 -1.4 -4.3 NTP pyrophosphohydrolase, MutT family compare
Atu3485 -1.4 -7.0 short chain dehydrogenase compare
Atu0978 -1.4 -5.9 two component response regulator compare
Atu0115 -1.4 -1.1 hypothetical protein compare
Atu4614 -1.4 -5.0 glycosyltransferase compare
Atu1457 -1.3 -2.4 hypothetical protein compare
Atu0647 -1.3 -4.1 phosphoribosylamine--glycine ligase compare
Atu2113 -1.3 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu4514 -1.3 -2.7 RpiR family transcriptional regulator compare
Atu4144 -1.3 -1.2 hypothetical protein compare
Atu2207 -1.3 -3.3 two component sensor kinase compare
Atu3754 -1.3 -5.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2373 -1.3 -6.2 UDP-hexose transferase compare
Atu0486 -1.3 -2.8 dihydroorotate dehydrogenase compare
Atu3777 -1.3 -5.9 hypothetical protein compare
Atu0070 -1.3 -4.5 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu2439 -1.2 -1.1 hypothetical protein compare
Atu1354 -1.2 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4346 -1.2 -4.4 hypothetical protein compare
Atu0888 -1.2 -4.8 transcriptional regulator, MerR family compare
Atu1141 -1.2 -3.5 Phosphoribosylglycinamide synthetase compare
Atu0399 -1.2 -4.0 dihydroorotase compare
Atu1307 -1.2 -3.1 dihydroorotase compare
Atu1163 -1.2 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4055 -1.2 -4.4 endo-1,3-1,4-beta-glycanase compare
Atu1581 -1.2 -1.3 hypothetical protein compare
Atu2289 -1.2 -7.4 anthranilate synthase component I and II compare
Atu8018 -1.2 -0.9 hypothetical protein compare
Atu1075 -1.2 -4.0 amidophosphoribosyltransferase compare
Atu2377 -1.2 -7.8 succinoglycan biosynthesis transport protein compare
Atu1205 -1.2 -6.1 threonine dehydratase compare
Atu0677 -1.1 -1.4 hypothetical protein compare
Atu4166 -1.1 -1.9 UDP-glucose 4-epimerase compare
Atu1338 -1.1 -3.7 3-oxoacyl-(acyl carrier protein) reductase compare
Atu1688 -1.1 -3.4 indole-3-glycerol-phosphate synthase compare
Atu6019 -1.1 -7.9 D-nopaline dehydrogenase compare
Atu1513 -1.1 -3.9 ABC excinuclease subunit A compare
Atu1687 -1.1 -4.3 anthranilate phosphoribosyltransferase compare
Atu0846 -1.1 -2.7 transcriptional regulator, MarR family compare
Atu2730 -1.1 -7.6 beta (1-->2) glucan biosynthesis protein compare
Atu0062 -1.1 -5.3 transcriptional regulator, ROK family compare
Atu4677 -1.1 -1.3 hypothetical protein compare
Atu4613 -1.1 -5.1 glycosyltransferase compare
Atu2650 -1.1 -5.1 glycerol-3-phosphate dehydrogenase compare
Atu3755 -1.1 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2640 -1.1 -2.6 hypothetical protein compare
Atu2791 -1.1 -4.0 3-isopropylmalate dehydrogenase compare
Atu3144 -1.1 -3.6 GntR family transcriptional regulator compare
Atu4615 -1.1 -5.1 glucose-1-phosphate thymidylyltransferase compare
Atu4217 -1.0 -0.8 TetR family transcriptional regulator compare
Atu2347 -1.0 -5.4 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2831 -1.0 -3.6 glucose inhibited division protein A compare
Atu1291 -1.0 -1.3 hypothetical protein compare
Atu1902 -1.0 -3.7 transketolase compare
Atu0400 -1.0 -3.3 orotate phosphoribosyltransferase compare
Atu1677 -1.0 -3.3 queuine tRNA-ribosyltransferase compare
Atu0149 -1.0 -1.7 enoyl-(acyl-carrier-protein) reductase compare
Atu0269 -1.0 -2.9 exodeoxyribonuclease VII large subunit compare
Atu1232 -1.0 -1.3 hypothetical protein compare
Atu8054 -1.0 -0.6 hypothetical protein compare
Atu3609 -1.0 -3.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0640 -1.0 -1.5 hypothetical protein compare
Atu4148 -1.0 -3.9 UDP-glucuronic acid epimerase compare
Atu2378 -1.0 -1.7 hypothetical protein compare
Atu0413 -1.0 -1.9 stress induced protein compare
Atu3739 -1.0 -1.7 phosphoglycerate kinase compare
Atu2264 -1.0 -4.7 2-isopropylmalate synthase compare
Atu6021 -1.0 -5.8 D-nopaline dehydrogenase compare
Atu1495 -1.0 -2.3 hypothetical protein compare
Atu0119 -1.0 -0.9 hypothetical protein compare
Atu0319 -1.0 -0.9 ubiquinone biosynthesis protein compare
Atu2682 -1.0 -2.1 hypothetical protein compare
Atu0101 -1.0 -2.4 cytochrome c compare
Atu4609 -0.9 -5.5 glycosyltransferase compare
Atu3627 -0.9 -1.6 hypothetical protein compare
Atu1236 -0.9 -4.1 polysaccharide biosynthesis glycosyltransferase compare
Atu2017 -0.9 -0.9 hypothetical protein compare
Atu0051 -0.9 -3.5 two component sensor kinase compare
Atu4608 -0.9 -5.9 hypothetical protein compare
Atu4160 -0.9 -2.9 RNA polymerase sigma factor compare
Atu2464 -0.9 -1.6 formyltetrahydrofolate deformylase compare
Atu0401 -0.9 -4.4 fructokinase compare
Atu5517 -0.9 -2.9 hypothetical protein compare
Atu3219 -0.9 -5.2 dihydroxy-acid dehydratase compare
Atu0601 -0.9 -4.8 oxidoreductase compare
Atu1028 -0.9 -1.6 hypothetical protein compare
Atu8095 -0.9 -3.1 hypothetical protein compare
Atu4502 -0.9 -4.6 cobalamin synthesis protein compare
Atu0938 -0.9 -1.7 transcriptional regulator, MerR family compare
Atu0142 -0.9 -1.6 cytochrome o ubiquinol oxidase subunit II compare
Atu8159 -0.9 -1.6 hypothetical protein compare
Atu0962 -0.9 -4.6 hypothetical protein compare
Atu1850 -0.9 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu5034 -0.9 -1.4 hypothetical protein compare
Atu1518 -0.9 -2.7 transcriptional regulator, Fur family compare
Atu1219 -0.9 -0.6 hypothetical protein compare
Atu2370 -0.9 -4.0 hypothetical protein compare
Atu0434 -0.9 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3719 -0.8 -4.5 MutT/nudix family protein compare
Atu8023 -0.8 -1.3 hypothetical protein compare
Atu0050 -0.8 -2.6 two component response regulator compare
Atu2224 -0.8 -4.6 aldehyde dehydrogenase compare
Atu2073 -0.8 -1.7 membrane protein compare
Atu2521 -0.8 -5.8 Protein regulated by acid pH compare
Atu1752 -0.8 -1.9 hypothetical protein compare
Atu2346 -0.8 -3.8 ABC transporter, membrane spanning protein (sugar) compare
Atu2554 -0.8 -1.6 lysyl-tRNA synthetase compare
Atu1323 -0.8 -1.2 hypothetical protein compare
Atu0357 -0.8 -4.1 phosphate starvation inducible protein compare
Atu1077 -0.8 -1.8 DNA repair protein compare
Atu3963 -0.8 -4.1 GntR family transcriptional regulator compare
Atu0636 -0.8 -3.6 hypothetical protein compare
Atu0658 -0.8 -4.1 phosphate permease compare
Atu0638 -0.8 -1.4 hypothetical protein compare
Atu4505 -0.8 -4.2 LacI family transcriptional regulator compare
Atu2115 -0.8 -3.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2286 -0.8 -0.6 hypothetical protein compare
Atu0071 -0.8 -2.6 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu3718 -0.8 -2.9 hypothetical protein compare
Atu0536 -0.8 -3.5 hypothetical protein compare
Atu8032 -0.8 -1.4 hypothetical protein compare
Atu0723 -0.8 -0.9 FAD dependent oxidoreductase compare
Atu0205 -0.8 -4.5 methylmalonate-semialdehyde dehydrogenase compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms