Experiment set13IT003 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0421 -3.4 -2.1 ABC transporter, membrane spanning protein compare
Atu0041 -3.3 -3.0 glutamine amidotransferase compare
Atu2036 -3.2 -15.3 acetolactate synthase III, large subunit compare
Atu0769 -3.2 -2.1 protoheme IX farnesyltransferase compare
Atu0040 -2.8 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2125 -2.7 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu3908 -2.6 -11.7 GntR family transcriptional regulator compare
Atu1588 -2.5 -9.8 homoserine dehydrogenase compare
Atu0043 -2.5 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu0331 -2.5 -3.5 sigma-54 modulation protein compare
Atu0039 -2.5 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu1422 -2.4 -11.2 transcriptional regulator, MarR family compare
Atu1417 -2.3 -7.8 enoyl-CoA hydratase compare
Atu0977 -2.2 -5.2 serine protease DO-like protease compare
Atu2728 -2.2 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0678 -2.2 -7.4 histidyl-tRNA synthetase compare
Atu0971 -2.1 -2.9 two component sensor kinase compare
Atu2040 -2.1 -5.3 phosphoserine phosphatase compare
Atu3763 -2.0 -1.4 hypothetical protein compare
Atu1364 -2.0 -6.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0537 -2.0 -7.0 histidinol dehydrogenase compare
Atu0399 -1.9 -6.3 dihydroorotase compare
Atu2368 -1.9 -2.0 hypothetical protein compare
Atu3732 -1.9 -11.9 hemolysin compare
Atu3706 -1.8 -6.0 D-3-phosphoglycerate dehydrogenase compare
Atu4317 -1.8 -3.6 TetR family transcriptional regulator compare
Atu4882 -1.8 -2.4 hypothetical protein compare
Atu4773 -1.8 -1.8 two component response regulator compare
Atu0422 -1.7 -3.0 ABC transporter, membrane spanning protein compare
Atu3754 -1.7 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1679 -1.7 -3.4 peptidyl prolyl cis-trans isomerase compare
Atu1359 -1.7 -1.4 dnaK deletion suppressor protein compare
Atu0679 -1.6 -4.4 ATP phosphoribosyltransferase compare
Atu1750 -1.6 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0999 -1.5 -6.4 magnesium transport protein compare
Atu4346 -1.5 -5.1 hypothetical protein compare
Atu0298 -1.5 -6.0 orotidine 5 compare
Atu0876 -1.5 -2.3 superoxide dismutase compare
Atu1030 -1.4 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1845 -1.4 -3.7 phosphoribosylformylglycinamidine synthase I compare
Atu1260 -1.4 -1.9 hypothetical protein compare
Atu0499 -1.4 -9.0 hypothetical protein compare
Atu2439 -1.4 -1.7 hypothetical protein compare
Atu0038 -1.4 -3.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -1.4 -2.0 phosphocarrier protein HPr compare
Atu2790 -1.4 -3.2 3-isopropylmalate dehydratase, small subunit compare
Atu2554 -1.4 -2.5 lysyl-tRNA synthetase compare
Atu4610 -1.3 -8.3 sugar nucleotide epimerase/dehydratase compare
Atu0419 -1.3 -2.4 two component sensor kinase compare
Atu2183 -1.3 -7.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu6098 -1.3 -1.1 transcriptional regulator, HTH family compare
Atu3009 -1.3 -1.3 exopolysaccharide production protein compare
Atu3707 -1.3 -2.0 phosphoserine aminotransferase compare
Atu8032 -1.2 -2.2 hypothetical protein compare
Atu4616 -1.2 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu3755 -1.2 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0149 -1.2 -4.1 enoyl-(acyl-carrier-protein) reductase compare
Atu0486 -1.2 -4.1 dihydroorotate dehydrogenase compare
Atu0482 -1.2 -7.1 polysaccharide deacetylase compare
Atu2555 -1.2 -3.7 L-lysine 2,3-aminomutase compare
Atu1308 -1.2 -2.6 aspartate carbamoyl transferase catalytic subunit compare
Atu3162 -1.1 -5.8 LacI family transcriptional regulator compare
Atu1184 -1.1 -3.0 hypothetical protein compare
Atu2017 -1.1 -1.1 hypothetical protein compare
Atu3739 -1.1 -3.0 phosphoglycerate kinase compare
Atu0319 -1.1 -1.3 ubiquinone biosynthesis protein compare
Atu0843 -1.1 -8.7 P type cation (metal) transporter, ATPase component compare
Atu0070 -1.1 -5.6 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1470 -1.1 -0.8 Camphor resistance protein compare
Atu1902 -1.1 -4.6 transketolase compare
Atu8202 -1.1 -3.4 hypothetical protein compare
Atu0659 -1.1 -3.5 NTP pyrophosphohydrolase, MutT family compare
Atu0071 -1.0 -3.8 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu4609 -1.0 -6.7 glycosyltransferase compare
Atu3718 -1.0 -5.2 hypothetical protein compare
Atu1683 -1.0 -1.6 hypothetical protein compare
Atu0723 -1.0 -1.3 FAD dependent oxidoreductase compare
Atu2522 -1.0 -6.2 agrobacterium chromosomal virulence protein B compare
Atu4617 -1.0 -5.7 dTDP-D-glucose-4,6-dehydratase compare
Atu2532 -1.0 -3.8 transcriptional regulator, MarR family compare
Atu8138 -1.0 -1.7 hypothetical protein compare
Atu0601 -1.0 -4.9 oxidoreductase compare
Atu4608 -1.0 -6.5 hypothetical protein compare
Atu4711 -1.0 -3.3 two component sensor kinase compare
Atu2373 -1.0 -5.3 UDP-hexose transferase compare
Atu8167 -1.0 -5.8 putative transmembrane protein compare
Atu1028 -1.0 -2.2 hypothetical protein compare
Atu3485 -1.0 -6.0 short chain dehydrogenase compare
Atu1688 -1.0 -3.6 indole-3-glycerol-phosphate synthase compare
Atu4613 -1.0 -6.6 glycosyltransferase compare
Atu4618 -1.0 -6.0 dTDP-rhamnose-3,5-epimerase compare
Atu2375 -1.0 -5.1 UDP-hexose transferase compare
Atu0354 -1.0 -1.7 ferric uptake regulator compare
Atu0269 -1.0 -3.3 exodeoxyribonuclease VII large subunit compare
Atu0647 -1.0 -3.5 phosphoribosylamine--glycine ligase compare
Atu1075 -1.0 -4.0 amidophosphoribosyltransferase compare
Atu0086 -0.9 -0.9 ribosome-binding factor A compare
Atu4615 -0.9 -4.5 glucose-1-phosphate thymidylyltransferase compare
Atu0912 -0.9 -1.1 Na+/H+ antiporter compare
Atu3353 -0.9 -5.6 mannose-1-phosphate guanylyltransferase compare
Atu0400 -0.9 -2.7 orotate phosphoribosyltransferase compare
Atu1307 -0.9 -2.7 dihydroorotase compare
Atu1705 -0.9 -3.4 SEC-independent protein translocase protein compare
Atu8087 -0.9 -0.9 putative peptidoglycan binding protein compare
Atu1205 -0.9 -6.0 threonine dehydratase compare
Atu3777 -0.9 -5.1 hypothetical protein compare
Atu4614 -0.9 -4.9 glycosyltransferase compare
Atu3730 -0.9 -0.9 hypothetical protein compare
Atu8176 -0.9 -1.7 hypothetical protein compare
Atu4029 -0.9 -3.9 gluconolactonase compare
Atu1103 -0.9 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2377 -0.9 -5.8 succinoglycan biosynthesis transport protein compare
Atu0017 -0.9 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1850 -0.9 -2.3 phosphoribosylformylglycinamidine synthetase II compare
Atu2682 -0.9 -3.3 hypothetical protein compare
Atu4148 -0.9 -3.8 UDP-glucuronic acid epimerase compare
Atu4162 -0.9 -5.7 two-component response regulator compare
Atu2249 -0.8 -1.0 hypothetical protein compare
Atu2803 -0.8 -3.1 Cobalamin biosynthesis associated protein compare
Atu1163 -0.8 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0153 -0.8 -2.1 transcriptional regulator, Fur family compare
Atu1589 -0.8 -4.4 aminotransferase, class I compare
Atu2052 -0.8 -3.3 hypothetical protein compare
Atu0978 -0.8 -4.3 two component response regulator compare
Atu0062 -0.8 -5.3 transcriptional regulator, ROK family compare
Atu0434 -0.8 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0658 -0.8 -4.5 phosphate permease compare
Atu0189 -0.8 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu1810 -0.8 -0.4 hypothetical protein compare
Atu4166 -0.8 -1.5 UDP-glucose 4-epimerase compare
Atu1619 -0.8 -1.5 protein-export membrane protein SECG compare
Atu2650 -0.8 -4.7 glycerol-3-phosphate dehydrogenase compare
Atu1007 -0.8 -1.8 hypothetical protein compare
Atu1513 -0.8 -2.9 ABC excinuclease subunit A compare
Atu0630 -0.8 -1.9 hypothetical protein compare
Atu3885 -0.8 -3.1 inositol monophosphatase compare
Atu3727 -0.8 -1.9 hypothetical protein compare
Atu8018 -0.7 -0.9 hypothetical protein compare
Atu1140 -0.7 -1.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3311 -0.7 -5.1 phosphomannose isomerase compare
Atu5125 -0.7 -1.8 GntR family transcriptional regulator compare
Atu4171 -0.7 -3.6 cold-shock dead-box protein A compare
Atu0888 -0.7 -3.4 transcriptional regulator, MerR family compare
Atu2239 -0.7 -1.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2370 -0.7 -4.3 hypothetical protein compare
Atu4099 -0.7 -3.8 hypothetical protein compare
Atu3910 -0.7 -2.7 LamB/YcsF family protein compare
Atu1258 -0.7 -3.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu4173 -0.7 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu1141 -0.7 -2.5 Phosphoribosylglycinamide synthetase compare
Atu4200 -0.7 -1.4 hypothetical protein compare
Atu1238 -0.7 -2.8 polysaccharide export protein compare
Atu3466 -0.7 -1.9 ArsR family transcriptional regulator compare
Atu1419 -0.7 -3.0 transcriptional regulator, GntR family compare
Atu0886 -0.7 -0.7 hypothetical protein compare
Atu2730 -0.7 -5.3 beta (1-->2) glucan biosynthesis protein compare
Atu4879 -0.7 -3.5 hypothetical protein compare
Atu3327 -0.7 -2.4 succinoglycan exopolysaccharide synthesis protein compare
Atu0162 -0.7 -2.4 biopolymer transport protein compare
Atu1904 -0.7 -1.9 transcriptional regulator compare
Atu4410 -0.7 -1.6 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu0051 -0.7 -2.7 two component sensor kinase compare
Atu0631 -0.7 -2.5 molybdenum cofactor biosynthesis protein B compare
Atu1559 -0.7 -1.4 hypothetical protein compare
Atu4878 -0.6 -2.7 hypothetical protein compare
Atu1380 -0.6 -3.5 zinc metallopeptidase compare
Atu1236 -0.6 -4.4 polysaccharide biosynthesis glycosyltransferase compare
Atu4149 -0.6 -4.3 UDP-glucose 6-dehydrogenase compare
Atu8046 -0.6 -2.3 hypothetical protein compare
Atu6131 -0.6 -2.9 TraR Antiactivator compare
Atu1405 -0.6 -1.5 transcriptional regulator, GntR family compare
Atu4217 -0.6 -0.7 TetR family transcriptional regulator compare
Atu1803 -0.6 -2.9 cold shock protein compare
Atu2692 -0.6 -2.4 intracellular septation protein compare
Atu0368 -0.6 -2.4 tRNA pseudouridine synthase I compare
Atu2010 -0.6 -3.7 GGDEF family protein compare
Atu2832 -0.6 -2.2 tRNA modification GTPase compare
Atu0161 -0.6 -4.0 biopolymer transport protein compare
Atu5075 -0.6 -3.2 GntR family transcriptional regulator compare
Atu0593 -0.6 -3.9 ABC transporter, membrane spanning protein compare
Atu4541 -0.6 -2.2 carboxymuconolactone decarboxylase compare
Atu4371 -0.6 -3.4 sugar ABC transporter permease compare
Atu5430 -0.6 -1.1 hypothetical protein compare
Atu2207 -0.6 -1.1 two component sensor kinase compare
Atu3429 -0.6 -1.0 hypothetical protein compare
Atu1687 -0.6 -3.4 anthranilate phosphoribosyltransferase compare
Atu2264 -0.6 -3.4 2-isopropylmalate synthase compare
Atu0796 -0.6 -2.8 putative peptidase compare
Atu1021 -0.6 -1.0 outer membrane protein compare
Atu2808 -0.6 -3.3 cobyric acid synthase compare
Atu0093 -0.6 -1.8 Recombination protein compare
Atu2045 -0.6 -2.6 HFLK protein compare
Atu1129 -0.6 -3.0 excinuclease ABC chain C compare
Atu4374 -0.6 -2.9 hypothetical protein compare
Atu3345 -0.6 -1.5 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu2710 -0.6 -2.8 hypothetical protein compare
Atu1853 -0.6 -1.7 hypothetical protein compare
Atu0565 -0.6 -1.9 hypothetical protein compare
Atu6020 -0.6 -2.8 conserved hypothetical protein compare
Atu8020 -0.6 -1.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms