Experiment set12IT092 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu6098 -5.1 -2.1 transcriptional regulator, HTH family compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu2036 -3.0 -14.4 acetolactate synthase III, large subunit compare
Atu0331 -2.7 -4.5 sigma-54 modulation protein compare
Atu1417 -2.6 -7.1 enoyl-CoA hydratase compare
Atu2728 -2.6 -4.6 beta (1-->2) glucan export ATP-binding protein compare
Atu0977 -2.5 -4.5 serine protease DO-like protease compare
Atu2125 -2.5 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu3707 -2.5 -3.2 phosphoserine aminotransferase compare
Atu3908 -2.4 -11.6 GntR family transcriptional regulator compare
Atu0723 -2.3 -2.7 FAD dependent oxidoreductase compare
Atu0971 -2.2 -4.0 two component sensor kinase compare
Atu1588 -2.2 -7.5 homoserine dehydrogenase compare
Atu0030 -2.2 -2.4 phosphocarrier protein HPr compare
Atu1422 -2.1 -10.4 transcriptional regulator, MarR family compare
Atu0769 -2.0 -2.3 protoheme IX farnesyltransferase compare
Atu1163 -1.8 -2.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4317 -1.8 -3.7 TetR family transcriptional regulator compare
Atu1364 -1.8 -5.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3706 -1.8 -5.5 D-3-phosphoglycerate dehydrogenase compare
Atu3732 -1.8 -8.9 hemolysin compare
Atu2040 -1.8 -6.2 phosphoserine phosphatase compare
Atu0040 -1.8 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2052 -1.7 -6.4 hypothetical protein compare
Atu0499 -1.6 -9.4 hypothetical protein compare
Atu0421 -1.5 -2.0 ABC transporter, membrane spanning protein compare
Atu1225 -1.5 -1.7 hypothetical protein compare
Atu0537 -1.4 -6.3 histidinol dehydrogenase compare
Atu3400 -1.4 -4.5 hypothetical protein compare
Atu0043 -1.4 -3.0 imidazoleglycerol-phosphate dehydratase compare
Atu0678 -1.4 -5.9 histidyl-tRNA synthetase compare
Atu0086 -1.4 -1.6 ribosome-binding factor A compare
Atu2439 -1.4 -1.4 hypothetical protein compare
Atu3663 -1.3 -1.4 hypothetical protein compare
Atu0399 -1.3 -3.9 dihydroorotase compare
Atu1470 -1.3 -1.2 Camphor resistance protein compare
Atu3754 -1.3 -6.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0843 -1.3 -9.0 P type cation (metal) transporter, ATPase component compare
Atu0422 -1.3 -1.6 ABC transporter, membrane spanning protein compare
Atu0153 -1.3 -4.9 transcriptional regulator, Fur family compare
Atu0041 -1.2 -1.7 glutamine amidotransferase compare
Atu1238 -1.2 -7.2 polysaccharide export protein compare
Atu0482 -1.2 -7.6 polysaccharide deacetylase compare
Atu4166 -1.2 -2.4 UDP-glucose 4-epimerase compare
Atu1030 -1.2 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -1.2 -1.2 dnaK deletion suppressor protein compare
Atu2073 -1.2 -5.1 membrane protein compare
Atu0162 -1.1 -4.4 biopolymer transport protein compare
Atu0038 -1.1 -3.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1750 -1.1 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu3777 -1.1 -6.1 hypothetical protein compare
Atu8167 -1.1 -7.1 putative transmembrane protein compare
Atu4614 -1.0 -4.6 glycosyltransferase compare
Atu0999 -1.0 -3.6 magnesium transport protein compare
Atu2620 -1.0 -1.5 hypothetical protein compare
Atu0368 -1.0 -4.6 tRNA pseudouridine synthase I compare
Atu1103 -1.0 -2.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu5125 -1.0 -4.5 GntR family transcriptional regulator compare
Atu2554 -1.0 -2.2 lysyl-tRNA synthetase compare
Atu0659 -1.0 -3.6 NTP pyrophosphohydrolase, MutT family compare
Atu1705 -1.0 -3.7 SEC-independent protein translocase protein compare
Atu3353 -1.0 -5.6 mannose-1-phosphate guanylyltransferase compare
Atu2522 -1.0 -7.6 agrobacterium chromosomal virulence protein B compare
Atu2183 -1.0 -5.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2377 -1.0 -6.4 succinoglycan biosynthesis transport protein compare
Atu0298 -1.0 -3.7 orotidine 5 compare
Atu0679 -1.0 -4.8 ATP phosphoribosyltransferase compare
Atu1846 -1.0 -1.6 hypothetical protein compare
Atu2832 -1.0 -3.9 tRNA modification GTPase compare
Atu2237 -1.0 -3.8 cytochrome c1 compare
Atu0357 -0.9 -4.4 phosphate starvation inducible protein compare
Atu1644 -0.9 -3.6 hypothetical protein compare
Atu0486 -0.9 -2.5 dihydroorotate dehydrogenase compare
Atu3311 -0.9 -6.0 phosphomannose isomerase compare
Atu0923 -0.9 -4.9 hypothetical protein compare
Atu4616 -0.9 -1.4 dTDP-4-dehydrorhamnose reductase compare
Atu4711 -0.9 -3.0 two component sensor kinase compare
Atu1236 -0.9 -5.6 polysaccharide biosynthesis glycosyltransferase compare
Atu2373 -0.9 -5.4 UDP-hexose transferase compare
Atu1468 -0.9 -4.1 hypothetical protein compare
Atu0141 -0.9 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu1850 -0.9 -3.0 phosphoribosylformylglycinamidine synthetase II compare
Atu4610 -0.9 -5.2 sugar nucleotide epimerase/dehydratase compare
Atu1354 -0.9 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0976 -0.9 -2.7 cycL protein compare
Atu1810 -0.9 -1.0 hypothetical protein compare
Atu3730 -0.9 -0.8 hypothetical protein compare
Atu2370 -0.9 -6.1 hypothetical protein compare
Atu6114 -0.8 -0.9 hypothetical protein compare
Atu1602 -0.8 -3.4 transcriptional activator, Crp family compare
Atu0051 -0.8 -3.4 two component sensor kinase compare
Atu2372 -0.8 -4.3 UDP-hexose transferase compare
Atu1838 -0.8 -3.1 ABC transporter, substrate binding protein (amino acid) compare
Atu1205 -0.8 -5.3 threonine dehydratase compare
Atu2378 -0.8 -2.4 hypothetical protein compare
Atu4162 -0.8 -4.4 two-component response regulator compare
Atu1021 -0.8 -2.1 outer membrane protein compare
Atu2831 -0.8 -3.2 glucose inhibited division protein A compare
Atu0190 -0.8 -3.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4217 -0.8 -0.9 TetR family transcriptional regulator compare
Atu4618 -0.8 -4.3 dTDP-rhamnose-3,5-epimerase compare
Atu0017 -0.8 -2.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0115 -0.8 -0.9 hypothetical protein compare
Atu2799 -0.8 -2.7 precorrin-6x reductase compare
Atu2239 -0.8 -2.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0973 -0.8 -3.7 cycH protein compare
Atu0842 -0.8 -1.1 hypothetical protein compare
Atu4068 -0.8 -1.5 sarcosine oxidase delta subunit compare
Atu5513 -0.8 -1.9 cold shock protein compare
Atu2730 -0.8 -5.3 beta (1-->2) glucan biosynthesis protein compare
Atu1902 -0.7 -3.2 transketolase compare
Atu4615 -0.7 -4.2 glucose-1-phosphate thymidylyltransferase compare
Atu0189 -0.7 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0269 -0.7 -3.1 exodeoxyribonuclease VII large subunit compare
Atu2692 -0.7 -2.5 intracellular septation protein compare
Atu0703 -0.7 -1.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1529 -0.7 -2.3 nitrogen fixation protein FixH compare
Atu1308 -0.7 -2.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1173 -0.7 -4.7 MFS permease compare
Atu0876 -0.7 -1.6 superoxide dismutase compare
Atu1573 -0.7 -1.3 hypothetical protein compare
Atu2375 -0.7 -3.5 UDP-hexose transferase compare
Atu0319 -0.7 -1.0 ubiquinone biosynthesis protein compare
Atu2238 -0.7 -3.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu5430 -0.7 -1.4 hypothetical protein compare
Atu8188 -0.7 -4.1 hypothetical protein compare
Atu4609 -0.7 -4.6 glycosyltransferase compare
Atu5540 -0.7 -1.0 hypothetical protein compare
Atu2044 -0.7 -2.9 HFLC protein compare
Atu2187 -0.7 -2.7 transcriptional regulator, ArsR family compare
Atu0400 -0.7 -1.7 orotate phosphoribosyltransferase compare
Atu2010 -0.7 -4.7 GGDEF family protein compare
Atu4223 -0.7 -0.8 sarcosine oxidase delta subunit compare
Atu0142 -0.7 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu1844 -0.7 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0184 -0.7 -1.2 glucokinase compare
Atu2682 -0.7 -2.9 hypothetical protein compare
Atu0601 -0.7 -4.0 oxidoreductase compare
Atu5468 -0.6 -1.8 hypothetical protein compare
Atu0050 -0.6 -2.4 two component response regulator compare
Atu4613 -0.6 -4.8 glycosyltransferase compare
Atu1258 -0.6 -2.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu1484 -0.6 -1.6 transcriptional regulator compare
Atu1239 -0.6 -5.0 exopolysaccharide production protein compare
Atu0029 -0.6 -2.3 S-adenosylhomocysteine hydrolase compare
Atu0401 -0.6 -2.2 fructokinase compare
Atu0361 -0.6 -1.4 transcriptional regulator compare
Atu1528 -0.6 -4.3 nitrogen fixation protein FixI compare
Atu0188 -0.6 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2578 -0.6 -2.8 cAMP-dependent protein kinase regulatory subunit compare
Atu1774 -0.6 -2.8 ABC transporter, substrate binding protein (peptide) compare
Atu1534 -0.6 -2.7 cytochrome-c oxidase, FixP chain compare
Atu0071 -0.6 -3.7 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu3219 -0.6 -3.8 dihydroxy-acid dehydratase compare
Atu3423 -0.6 -1.5 hypothetical protein compare
Atu1513 -0.6 -2.6 ABC excinuclease subunit A compare
Atu1685 -0.6 -0.7 hypothetical protein compare
Atu2824 -0.6 -2.7 hypothetical protein compare
Atu1601 -0.6 -4.0 oxygen-independent coproporphyrinogen III oxidase compare
Atu3457 -0.6 -3.2 ABC transporter permease compare
Atu4617 -0.6 -3.0 dTDP-D-glucose-4,6-dehydratase compare
Atu2650 -0.6 -3.4 glycerol-3-phosphate dehydrogenase compare
Atu8088 -0.6 -0.9 hypothetical protein compare
Atu2379 -0.6 -3.5 phosphomannomutase compare
Atu4451 -0.6 -3.9 mannitol 2-dehydrogenase compare
Atu1677 -0.6 -2.3 queuine tRNA-ribosyltransferase compare
Atu5157 -0.6 -2.4 hypothetical protein compare
Atu1536 -0.6 -1.9 cytochrome C oxidase, FixO chain compare
Atu8025 -0.6 -0.9 hypothetical protein compare
Atu4608 -0.6 -3.7 hypothetical protein compare
Atu6019 -0.6 -4.6 D-nopaline dehydrogenase compare
Atu2633 -0.6 -0.8 RhtB family transporter compare
Atu1074 -0.6 -3.9 NAD/NADP dependent oxidoreductase compare
Atu0161 -0.6 -3.6 biopolymer transport protein compare
Atu4773 -0.6 -0.8 two component response regulator compare
Atu4093 -0.6 -1.4 hypothetical protein compare
Atu0481 -0.5 -4.0 exopolysaccharide production protein compare
Atu2640 -0.5 -2.4 hypothetical protein compare
Atu4346 -0.5 -2.3 hypothetical protein compare
Atu1307 -0.5 -2.2 dihydroorotase compare
Atu2113 -0.5 -1.4 N-acetylmuramoyl-L-alanine amidase compare
Atu2795 -0.5 -3.1 cobalamin biosynthetic protein compare
Atu0062 -0.5 -2.6 transcriptional regulator, ROK family compare
Atu3755 -0.5 -1.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0588 -0.5 -4.2 hypothetical protein compare
Atu2662 -0.5 -0.6 acetyltransferase compare
Atu2746 -0.5 -2.3 hypothetical protein compare
Atu1302 -0.5 -1.2 hypothetical protein compare
Atu2369 -0.5 -4.2 Hypothetical Protein compare
Atu2346 -0.5 -3.7 ABC transporter, membrane spanning protein (sugar) compare
Atu3739 -0.5 -1.5 phosphoglycerate kinase compare
Atu1141 -0.5 -3.1 Phosphoribosylglycinamide synthetase compare
Atu2267 -0.5 -2.5 hypothetical protein compare
Atu2803 -0.5 -2.1 Cobalamin biosynthesis associated protein compare
Atu0031 -0.5 -0.8 PTS system, IIA component compare
Atu0163 -0.5 -2.4 tonB protein compare
Atu0641 -0.5 -1.8 hypothetical protein compare
Atu5160 -0.5 -1.5 transcriptional regulator protein compare
Atu6131 -0.5 -2.8 TraR Antiactivator compare
Atu1970 -0.5 -1.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms