Experiment set12IT087 for Agrobacterium fabrum C58
LB_Ntabacum_leaf
Group: lb_ntabacum_leafMedia: LB + LB_Ntabacum_leaf
Culturing: Agro_ML11, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 4/1/22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
For lb_ntabacum_leaf LB_Ntabacum_leaf in Agrobacterium fabrum C58
For lb_ntabacum_leaf LB_Ntabacum_leaf across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| HMG CoA Synthesis | 2 |
| Leucine Degradation and HMG-CoA Metabolism | 2 |
| Serine-glyoxylate cycle | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Valine, leucine and isoleucine degradation
- Synthesis and degradation of ketone bodies
- Butanoate metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| mevalonate degradation | 2 | 1 | 1 |
| L-leucine degradation I | 6 | 5 | 2 |
| ketogenesis | 5 | 3 | 1 |
| cis-geranyl-CoA degradation | 9 | 2 | 1 |