Experiment set12IT078 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2125 -5.6 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1030 -5.4 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu6098 -5.0 -2.1 transcriptional regulator, HTH family compare
Atu4072 -4.2 -3.2 nodulation protein N compare
Atu0039 -4.0 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3908 -3.6 -15.7 GntR family transcriptional regulator compare
Atu2036 -3.5 -17.1 acetolactate synthase III, large subunit compare
Atu0184 -3.5 -4.5 glucokinase compare
Atu1417 -3.4 -10.6 enoyl-CoA hydratase compare
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0041 -3.3 -3.5 glutamine amidotransferase compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu0331 -3.0 -4.9 sigma-54 modulation protein compare
Atu2728 -2.8 -4.3 beta (1-->2) glucan export ATP-binding protein compare
Atu3707 -2.8 -3.9 phosphoserine aminotransferase compare
Atu0723 -2.7 -3.0 FAD dependent oxidoreductase compare
Atu0141 -2.6 -1.9 cytochrome O ubiquinol oxidase subunit I compare
Atu0537 -2.5 -8.7 histidinol dehydrogenase compare
Atu0038 -2.3 -4.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -2.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu4317 -2.2 -4.2 TetR family transcriptional regulator compare
Atu1470 -2.1 -2.1 Camphor resistance protein compare
Atu0769 -2.1 -2.4 protoheme IX farnesyltransferase compare
Atu4711 -2.0 -9.1 two component sensor kinase compare
Atu0678 -2.0 -6.2 histidyl-tRNA synthetase compare
Atu3706 -2.0 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu1359 -2.0 -1.6 dnaK deletion suppressor protein compare
Atu0163 -2.0 -8.1 tonB protein compare
Atu0162 -2.0 -8.7 biopolymer transport protein compare
Atu0971 -2.0 -4.3 two component sensor kinase compare
Atu0679 -2.0 -6.7 ATP phosphoribosyltransferase compare
Atu1588 -1.9 -8.6 homoserine dehydrogenase compare
Atu0703 -1.9 -3.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0031 -1.8 -1.8 PTS system, IIA component compare
Atu1028 -1.8 -3.5 hypothetical protein compare
Atu0401 -1.8 -4.7 fructokinase compare
Atu0399 -1.8 -5.1 dihydroorotase compare
Atu1750 -1.8 -7.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu4616 -1.8 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu3469 -1.8 -2.5 phosphoglyceromutase compare
Atu0977 -1.8 -3.9 serine protease DO-like protease compare
Atu2522 -1.8 -10.0 agrobacterium chromosomal virulence protein B compare
Atu1422 -1.7 -8.6 transcriptional regulator, MarR family compare
Atu1163 -1.7 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1364 -1.7 -5.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2057 -1.7 -2.9 DNA helicase II compare
Atu4773 -1.7 -1.8 two component response regulator compare
Atu2183 -1.7 -9.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0153 -1.7 -6.3 transcriptional regulator, Fur family compare
Atu0784 -1.7 -2.2 hypothetical protein compare
Atu3353 -1.7 -9.8 mannose-1-phosphate guanylyltransferase compare
Atu2554 -1.6 -2.3 lysyl-tRNA synthetase compare
Atu4148 -1.6 -6.0 UDP-glucuronic acid epimerase compare
Atu2207 -1.6 -2.1 two component sensor kinase compare
Atu0161 -1.6 -8.7 biopolymer transport protein compare
Atu1683 -1.5 -2.3 hypothetical protein compare
Atu1354 -1.5 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0486 -1.5 -4.1 dihydroorotate dehydrogenase compare
Atu1705 -1.5 -3.9 SEC-independent protein translocase protein compare
Atu1205 -1.5 -8.9 threonine dehydratase compare
Atu3754 -1.5 -4.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3755 -1.5 -4.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4166 -1.5 -2.6 UDP-glucose 4-epimerase compare
Atu0029 -1.5 -4.4 S-adenosylhomocysteine hydrolase compare
Atu2439 -1.5 -1.9 hypothetical protein compare
Atu3739 -1.5 -2.3 phosphoglycerate kinase compare
Atu0099 -1.4 -6.5 prephenate dehydratase compare
Atu0086 -1.4 -1.8 ribosome-binding factor A compare
Atu4618 -1.4 -7.4 dTDP-rhamnose-3,5-epimerase compare
Atu2040 -1.4 -4.2 phosphoserine phosphatase compare
Atu1140 -1.4 -4.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0030 -1.4 -1.9 phosphocarrier protein HPr compare
Atu1688 -1.4 -4.0 indole-3-glycerol-phosphate synthase compare
Atu2592 -1.3 -5.9 hypothetical protein compare
Atu1566 -1.3 -1.6 hypothetical protein compare
Atu2684 -1.3 -1.8 hypothetical protein compare
Atu8167 -1.3 -8.1 putative transmembrane protein compare
Atu1468 -1.3 -6.1 hypothetical protein compare
Atu1850 -1.3 -4.2 phosphoribosylformylglycinamidine synthetase II compare
Atu0434 -1.3 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2289 -1.3 -9.5 anthranilate synthase component I and II compare
Atu8191 -1.3 -2.2 hypothetical protein compare
Atu3311 -1.3 -8.2 phosphomannose isomerase compare
Atu2832 -1.3 -3.2 tRNA modification GTPase compare
Atu1141 -1.3 -5.1 Phosphoribosylglycinamide synthetase compare
Atu0894 -1.3 -2.1 ABC transporter, membrane spanning protein compare
Atu0419 -1.2 -2.0 two component sensor kinase compare
Atu0876 -1.2 -1.6 superoxide dismutase compare
Atu2584 -1.2 -4.3 hypothetical protein compare
Atu0101 -1.2 -3.6 cytochrome c compare
Atu2239 -1.2 -2.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1447 -1.2 -1.8 two component sensor kinase compare
Atu0189 -1.2 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2238 -1.2 -5.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1845 -1.2 -3.8 phosphoribosylformylglycinamidine synthase I compare
Atu2640 -1.2 -4.4 hypothetical protein compare
Atu1687 -1.2 -6.5 anthranilate phosphoribosyltransferase compare
Atu0062 -1.1 -4.6 transcriptional regulator, ROK family compare
Atu2067 -1.1 -1.2 hypothetical protein compare
Atu4617 -1.1 -6.6 dTDP-D-glucose-4,6-dehydratase compare
Atu2073 -1.1 -5.2 membrane protein compare
Atu3598 -1.1 -2.3 thiol:disulfide interchange protein compare
Atu1308 -1.1 -4.8 aspartate carbamoyl transferase catalytic subunit compare
Atu4149 -1.1 -7.5 UDP-glucose 6-dehydrogenase compare
Atu1902 -1.1 -4.0 transketolase compare
Atu2583 -1.1 -7.0 glycosyltransferase compare
Atu0895 -1.1 -3.0 ABC transporter, substrate binding protein compare
Atu4615 -1.1 -7.3 glucose-1-phosphate thymidylyltransferase compare
Atu3485 -1.1 -7.0 short chain dehydrogenase compare
Atu1644 -1.1 -2.9 hypothetical protein compare
Atu2650 -1.1 -5.8 glycerol-3-phosphate dehydrogenase compare
Atu0050 -1.0 -3.6 two component response regulator compare
Atu1647 -1.0 -5.2 ABC transporter, membrane spanning protein compare
Atu2555 -1.0 -3.5 L-lysine 2,3-aminomutase compare
Atu5125 -1.0 -3.3 GntR family transcriptional regulator compare
Atu1513 -1.0 -4.2 ABC excinuclease subunit A compare
Atu1774 -1.0 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu0188 -1.0 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3885 -1.0 -5.4 inositol monophosphatase compare
Atu2709 -1.0 -6.8 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -1.0 -6.2 2-isopropylmalate synthase compare
Atu2791 -1.0 -5.9 3-isopropylmalate dehydrogenase compare
Atu4217 -1.0 -1.2 TetR family transcriptional regulator compare
Atu2591 -1.0 -3.9 glucosyltransferase compare
Atu8138 -1.0 -1.5 hypothetical protein compare
Atu2442 -0.9 -2.4 hypothetical protein compare
Atu1844 -0.9 -2.8 Phosphoribosylformylglycinamidine synthetase compare
Atu0340 -0.9 -2.1 SAM dependent methyltransferase compare
Atu1646 -0.9 -4.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1075 -0.9 -5.0 amidophosphoribosyltransferase compare
Atu0017 -0.9 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4610 -0.9 -5.9 sugar nucleotide epimerase/dehydratase compare
Atu4418 -0.9 -2.6 glutaryl-CoA dehydrogenase compare
Atu2582 -0.9 -4.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0577 -0.9 -2.0 FLAF protein compare
Atu3750 -0.9 -2.7 thiamine-phosphate pyrophosphorylase compare
Atu1739 -0.9 -2.3 permease compare
Atu4614 -0.9 -3.2 glycosyltransferase compare
Atu1535 -0.9 -1.4 cytochrome c oxidase, FixQ chain compare
Atu2585 -0.9 -4.1 hypothetical protein compare
Atu1645 -0.9 -4.4 ABC transporter, substrate binding protein compare
Atu2052 -0.9 -4.1 hypothetical protein compare
Atu1339 -0.9 -2.8 ribonuclease E compare
Atu3727 -0.8 -2.4 hypothetical protein compare
Atu0026 -0.8 -0.9 hypothetical protein compare
Atu2590 -0.8 -4.0 hypothetical protein compare
Atu3496 -0.8 -2.1 hypothetical protein compare
Atu2237 -0.8 -3.1 cytochrome c1 compare
Atu2577 -0.8 -6.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0893 -0.8 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2800 -0.8 -1.4 precorrin-3B C17-methyltransferase compare
Atu1810 -0.8 -0.9 hypothetical protein compare
Atu2718 -0.8 -3.3 homoserine O-succinyltransferase compare
Atu2801 -0.8 -3.4 precorrin-2 C20 methyltransferase compare
Atu3732 -0.8 -4.9 hemolysin compare
Atu2352 -0.8 -1.7 hypothetical protein compare
Atu0400 -0.8 -2.4 orotate phosphoribosyltransferase compare
Atu0499 -0.8 -3.5 hypothetical protein compare
Atu1074 -0.8 -4.5 NAD/NADP dependent oxidoreductase compare
Atu1327 -0.8 -1.8 NADH-ubiquinone oxidoreductase compare
Atu1077 -0.8 -2.9 DNA repair protein compare
Atu0540 -0.8 -2.4 hypothetical protein compare
Atu2379 -0.7 -3.9 phosphomannomutase compare
Atu3219 -0.7 -4.5 dihydroxy-acid dehydratase compare
Atu2616 -0.7 -3.0 hypothetical protein compare
Atu4161 -0.7 -1.3 hypothetical protein compare
Atu4346 -0.7 -4.4 hypothetical protein compare
Atu2267 -0.7 -2.2 hypothetical protein compare
Atu0771 -0.7 -4.2 cytochrome c oxidase subunit III compare
Atu4613 -0.7 -5.1 glycosyltransferase compare
Atu0837 -0.7 -3.5 transcriptional regulator, MarR family compare
Atu1419 -0.7 -4.0 transcriptional regulator, GntR family compare
Atu1570 -0.7 -0.7 hypothetical protein compare
Atu0432 -0.7 -2.9 O-succinylhomoserine sulfhydrylase compare
Atu3971 -0.7 -5.5 dihydroxy-acid dehydratase compare
Atu2787 -0.7 -0.7 hypothetical protein compare
Atu8054 -0.7 -0.8 hypothetical protein compare
Atu0647 -0.7 -3.5 phosphoribosylamine--glycine ligase compare
Atu1581 -0.7 -1.3 hypothetical protein compare
Atu1307 -0.7 -3.3 dihydroorotase compare
Atu2274 -0.7 -4.2 cation efflux system protein compare
Atu0149 -0.7 -2.2 enoyl-(acyl-carrier-protein) reductase compare
Atu2184 -0.7 -3.3 transcriptional regulator, AsnC family compare
Atu8094 -0.7 -2.7 hypothetical protein compare
Atu4514 -0.7 -2.5 RpiR family transcriptional regulator compare
Atu5430 -0.7 -0.8 hypothetical protein compare
Atu2682 -0.7 -2.1 hypothetical protein compare
Atu2001 -0.7 -4.0 excinuclease ABC subunit B compare
Atu0973 -0.7 -3.1 cycH protein compare
Atu1619 -0.7 -0.9 protein-export membrane protein SECG compare
Atu1099 -0.6 -2.9 hypothetical protein compare
Atu3162 -0.6 -3.2 LacI family transcriptional regulator compare
Atu5443 -0.6 -3.7 TetR family transcriptional regulator compare
Atu4451 -0.6 -4.7 mannitol 2-dehydrogenase compare
Atu3280 -0.6 -2.8 GntR family transcriptional regulator compare
Atu1076 -0.6 -2.1 colicin V production protein compare
Atu4055 -0.6 -2.5 endo-1,3-1,4-beta-glycanase compare
Atu1602 -0.6 -4.0 transcriptional activator, Crp family compare
Atu4824 -0.6 -3.5 IclR family transcriptional regulator compare
Atu2831 -0.6 -2.7 glucose inhibited division protein A compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms