Experiment set12IT077 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.4 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2036 -4.3 -17.0 acetolactate synthase III, large subunit compare
Atu2125 -3.6 -2.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0038 -3.6 -6.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -3.5 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu1417 -3.1 -9.0 enoyl-CoA hydratase compare
Atu3469 -3.1 -4.2 phosphoglyceromutase compare
Atu3707 -3.1 -3.8 phosphoserine aminotransferase compare
Atu0039 -2.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1163 -2.9 -2.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2684 -2.8 -2.4 hypothetical protein compare
Atu2554 -2.7 -3.3 lysyl-tRNA synthetase compare
Atu3706 -2.7 -9.0 D-3-phosphoglycerate dehydrogenase compare
Atu0163 -2.7 -9.6 tonB protein compare
Atu2728 -2.7 -4.5 beta (1-->2) glucan export ATP-binding protein compare
Atu2040 -2.7 -7.5 phosphoserine phosphatase compare
Atu3908 -2.5 -11.5 GntR family transcriptional regulator compare
Atu1359 -2.5 -1.7 dnaK deletion suppressor protein compare
Atu0031 -2.5 -2.0 PTS system, IIA component compare
Atu0041 -2.5 -3.2 glutamine amidotransferase compare
Atu1588 -2.5 -9.2 homoserine dehydrogenase compare
Atu0161 -2.4 -11.1 biopolymer transport protein compare
Atu0678 -2.4 -8.0 histidyl-tRNA synthetase compare
Atu1750 -2.3 -7.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -2.3 -9.1 histidinol dehydrogenase compare
Atu0331 -2.3 -3.1 sigma-54 modulation protein compare
Atu0703 -2.2 -3.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2057 -2.2 -3.4 DNA helicase II compare
Atu0784 -2.2 -5.1 hypothetical protein compare
Atu4217 -2.2 -2.0 TetR family transcriptional regulator compare
Atu0162 -2.2 -5.3 biopolymer transport protein compare
Atu0769 -2.2 -2.1 protoheme IX farnesyltransferase compare
Atu0679 -2.2 -8.6 ATP phosphoribosyltransferase compare
Atu0030 -2.1 -2.2 phosphocarrier protein HPr compare
Atu0153 -2.0 -5.3 transcriptional regulator, Fur family compare
Atu2207 -2.0 -3.3 two component sensor kinase compare
Atu1364 -2.0 -7.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1470 -2.0 -1.3 Camphor resistance protein compare
Atu3754 -1.9 -3.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0399 -1.8 -4.0 dihydroorotase compare
Atu0977 -1.7 -4.6 serine protease DO-like protease compare
Atu2522 -1.7 -10.8 agrobacterium chromosomal virulence protein B compare
Atu4317 -1.7 -2.5 TetR family transcriptional regulator compare
Atu1446 -1.6 -2.6 two component response regulator compare
Atu0876 -1.6 -2.0 superoxide dismutase compare
Atu1647 -1.6 -7.7 ABC transporter, membrane spanning protein compare
Atu0086 -1.6 -1.7 ribosome-binding factor A compare
Atu2592 -1.6 -6.9 hypothetical protein compare
Atu8161 -1.5 -1.6 hypothetical protein compare
Atu4711 -1.5 -5.8 two component sensor kinase compare
Atu1687 -1.5 -7.3 anthranilate phosphoribosyltransferase compare
Atu0099 -1.5 -8.9 prephenate dehydratase compare
Atu1075 -1.5 -6.2 amidophosphoribosyltransferase compare
Atu3353 -1.5 -8.9 mannose-1-phosphate guanylyltransferase compare
Atu0486 -1.5 -3.6 dihydroorotate dehydrogenase compare
Atu4773 -1.5 -2.1 two component response regulator compare
Atu0141 -1.4 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu3311 -1.4 -9.2 phosphomannose isomerase compare
Atu2017 -1.4 -0.9 hypothetical protein compare
Atu3885 -1.4 -6.1 inositol monophosphatase compare
Atu2289 -1.4 -9.3 anthranilate synthase component I and II compare
Atu1141 -1.4 -6.7 Phosphoribosylglycinamide synthetase compare
Atu1688 -1.4 -4.1 indole-3-glycerol-phosphate synthase compare
Atu0029 -1.4 -4.5 S-adenosylhomocysteine hydrolase compare
Atu1645 -1.4 -7.5 ABC transporter, substrate binding protein compare
Atu3755 -1.4 -4.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2590 -1.4 -7.8 hypothetical protein compare
Atu1140 -1.4 -4.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu8167 -1.4 -8.3 putative transmembrane protein compare
Atu0401 -1.4 -5.7 fructokinase compare
Atu0894 -1.3 -2.2 ABC transporter, membrane spanning protein compare
Atu2439 -1.3 -1.4 hypothetical protein compare
Atu2183 -1.3 -5.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0895 -1.3 -3.3 ABC transporter, substrate binding protein compare
Atu2718 -1.3 -5.0 homoserine O-succinyltransferase compare
Atu3739 -1.3 -2.3 phosphoglycerate kinase compare
Atu2791 -1.3 -6.3 3-isopropylmalate dehydrogenase compare
Atu0184 -1.3 -1.9 glucokinase compare
Atu2583 -1.3 -7.7 glycosyltransferase compare
Atu0912 -1.3 -1.4 Na+/H+ antiporter compare
Atu2650 -1.2 -7.6 glycerol-3-phosphate dehydrogenase compare
Atu1845 -1.2 -2.8 phosphoribosylformylglycinamidine synthase I compare
Atu2379 -1.2 -6.1 phosphomannomutase compare
Atu1422 -1.2 -6.6 transcriptional regulator, MarR family compare
Atu1205 -1.2 -8.2 threonine dehydratase compare
Atu2585 -1.2 -4.8 hypothetical protein compare
Atu1447 -1.2 -2.0 two component sensor kinase compare
Atu0660 -1.2 -6.4 hydrolase compare
Atu3485 -1.2 -6.7 short chain dehydrogenase compare
Atu8018 -1.2 -1.1 hypothetical protein compare
Atu0017 -1.2 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2376 -1.2 -1.7 hypothetical protein compare
Atu0062 -1.2 -4.6 transcriptional regulator, ROK family compare
Atu4148 -1.2 -4.7 UDP-glucuronic acid epimerase compare
Atu2790 -1.1 -2.1 3-isopropylmalate dehydratase, small subunit compare
Atu0040 -1.1 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1468 -1.1 -5.2 hypothetical protein compare
Atu4149 -1.1 -6.6 UDP-glucose 6-dehydrogenase compare
Atu2073 -1.1 -5.0 membrane protein compare
Atu1844 -1.1 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu1646 -1.1 -4.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu0971 -1.1 -2.7 two component sensor kinase compare
Atu2640 -1.1 -3.4 hypothetical protein compare
Atu1513 -1.1 -4.4 ABC excinuclease subunit A compare
Atu2591 -1.1 -6.1 glucosyltransferase compare
Atu0976 -1.1 -3.7 cycL protein compare
Atu1850 -1.1 -2.4 phosphoribosylformylglycinamidine synthetase II compare
Atu2264 -1.1 -6.5 2-isopropylmalate synthase compare
Atu0647 -1.1 -4.2 phosphoribosylamine--glycine ligase compare
Atu2709 -1.1 -7.7 3-isopropylmalate dehydratase, large subunit compare
Atu1028 -1.1 -1.8 hypothetical protein compare
Atu0026 -1.0 -1.1 hypothetical protein compare
Atu2800 -1.0 -2.0 precorrin-3B C17-methyltransferase compare
Atu1644 -1.0 -2.4 hypothetical protein compare
Atu2832 -1.0 -3.1 tRNA modification GTPase compare
Atu2239 -1.0 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1874 -1.0 -2.0 RecA protein compare
Atu1380 -1.0 -5.3 zinc metallopeptidase compare
Atu0432 -1.0 -5.2 O-succinylhomoserine sulfhydrylase compare
Atu1308 -1.0 -4.3 aspartate carbamoyl transferase catalytic subunit compare
Atu0025 -1.0 -1.6 hypothetical protein compare
Atu1705 -1.0 -2.5 SEC-independent protein translocase protein compare
Atu2464 -1.0 -2.0 formyltetrahydrofolate deformylase compare
Atu2577 -1.0 -7.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0923 -1.0 -3.6 hypothetical protein compare
Atu2237 -1.0 -4.3 cytochrome c1 compare
Atu0354 -1.0 -1.9 ferric uptake regulator compare
Atu4618 -1.0 -5.9 dTDP-rhamnose-3,5-epimerase compare
Atu1327 -1.0 -2.1 NADH-ubiquinone oxidoreductase compare
Atu1774 -1.0 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu1739 -1.0 -2.6 permease compare
Atu0361 -1.0 -1.9 transcriptional regulator compare
Atu1619 -0.9 -1.8 protein-export membrane protein SECG compare
Atu2584 -0.9 -4.3 hypothetical protein compare
Atu0422 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu3732 -0.9 -5.6 hemolysin compare
Atu3219 -0.9 -6.0 dihydroxy-acid dehydratase compare
Atu2831 -0.9 -4.2 glucose inhibited division protein A compare
Atu1904 -0.9 -4.2 transcriptional regulator compare
Atu5125 -0.9 -3.8 GntR family transcriptional regulator compare
Atu0837 -0.9 -4.3 transcriptional regulator, MarR family compare
Atu1254 -0.9 -1.8 transcriptional regulator, ArsR family compare
Atu0050 -0.9 -3.2 two component response regulator compare
Atu2555 -0.9 -2.3 L-lysine 2,3-aminomutase compare
Atu2582 -0.8 -4.2 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0190 -0.8 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5142 -0.8 -1.3 hypothetical protein compare
Atu3598 -0.8 -1.6 thiol:disulfide interchange protein compare
Atu0535 -0.8 -3.1 hypothetical protein compare
Atu0434 -0.8 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1129 -0.8 -4.8 excinuclease ABC chain C compare
Atu1110 -0.8 -1.4 cytosol aminopeptidase compare
Atu4610 -0.8 -4.3 sugar nucleotide epimerase/dehydratase compare
Atu1810 -0.8 -0.9 hypothetical protein compare
Atu4446 -0.8 -4.8 hypothetical protein compare
Atu3750 -0.8 -1.9 thiamine-phosphate pyrophosphorylase compare
Atu2694 -0.8 -2.1 hypothetical protein compare
Atu1902 -0.8 -3.0 transketolase compare
Atu6165 -0.8 -1.3 hypothetical protein compare
Atu0230 -0.8 -1.5 hypothetical protein compare
Atu1714 -0.8 -1.3 exonuclease III compare
Atu2824 -0.8 -2.4 hypothetical protein compare
Atu2238 -0.8 -3.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0298 -0.8 -3.5 orotidine 5 compare
Atu0051 -0.8 -2.9 two component sensor kinase compare
Atu2801 -0.8 -1.8 precorrin-2 C20 methyltransferase compare
Atu2113 -0.7 -2.5 N-acetylmuramoyl-L-alanine amidase compare
Atu1074 -0.7 -4.6 NAD/NADP dependent oxidoreductase compare
Atu0499 -0.7 -3.3 hypothetical protein compare
Atu2616 -0.7 -3.3 hypothetical protein compare
Atu1099 -0.7 -3.4 hypothetical protein compare
Atu0978 -0.7 -4.8 two component response regulator compare
Atu3971 -0.7 -5.3 dihydroxy-acid dehydratase compare
Atu1891 -0.7 -1.8 cobalamin biosynthesis protein compare
Atu3963 -0.7 -3.7 GntR family transcriptional regulator compare
Atu4166 -0.7 -1.6 UDP-glucose 4-epimerase compare
Atu4617 -0.7 -3.9 dTDP-D-glucose-4,6-dehydratase compare
Atu1021 -0.7 -1.5 outer membrane protein compare
Atu1232 -0.7 -1.5 hypothetical protein compare
Atu0142 -0.7 -1.6 cytochrome o ubiquinol oxidase subunit II compare
Atu0893 -0.7 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu8191 -0.7 -1.1 hypothetical protein compare
Atu4614 -0.7 -2.8 glycosyltransferase compare
Atu6131 -0.7 -2.6 TraR Antiactivator compare
Atu0598 -0.7 -3.0 phosphogluconate dehydratase compare
Atu0237 -0.7 -2.2 hypothetical protein compare
Atu0400 -0.7 -1.7 orotate phosphoribosyltransferase compare
Atu0073 -0.7 -3.9 recF-like protein compare
Atu1301 -0.7 -1.0 hypothetical protein compare
Atu0986 -0.7 -1.0 hypothetical protein compare
Atu4541 -0.7 -3.4 carboxymuconolactone decarboxylase compare
Atu0711 -0.7 -4.0 potassium uptake protein compare
Atu4346 -0.7 -3.3 hypothetical protein compare
Atu1307 -0.7 -2.6 dihydroorotase compare
Atu1678 -0.6 -2.8 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu2249 -0.6 -0.9 hypothetical protein compare
Atu4068 -0.6 -1.5 sarcosine oxidase delta subunit compare
Atu4451 -0.6 -3.4 mannitol 2-dehydrogenase compare
Atu1527 -0.6 -2.4 nitrogen fixation protein FixS compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms