Experiment set12IT071 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2684 -5.5 -3.8 hypothetical protein compare
Atu1030 -5.4 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0141 -4.3 -2.9 cytochrome O ubiquinol oxidase subunit I compare
Atu3908 -3.7 -13.9 GntR family transcriptional regulator compare
Atu2036 -3.5 -16.2 acetolactate synthase III, large subunit compare
Atu0039 -3.4 -4.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu3763 -3.3 -2.3 hypothetical protein compare
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2728 -3.2 -5.3 beta (1-->2) glucan export ATP-binding protein compare
Atu1417 -3.0 -7.7 enoyl-CoA hydratase compare
Atu2125 -2.7 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu0399 -2.6 -8.2 dihydroorotase compare
Atu4317 -2.6 -5.3 TetR family transcriptional regulator compare
Atu1588 -2.6 -9.9 homoserine dehydrogenase compare
Atu1163 -2.6 -2.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1359 -2.5 -1.8 dnaK deletion suppressor protein compare
Atu0678 -2.5 -7.3 histidyl-tRNA synthetase compare
Atu0043 -2.5 -2.0 imidazoleglycerol-phosphate dehydratase compare
Atu0769 -2.4 -2.5 protoheme IX farnesyltransferase compare
Atu6098 -2.4 -1.7 transcriptional regulator, HTH family compare
Atu0038 -2.3 -5.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0537 -2.3 -8.8 histidinol dehydrogenase compare
Atu3712 -2.3 -2.4 hypothetical protein compare
Atu1810 -2.3 -1.8 hypothetical protein compare
Atu0971 -2.2 -4.5 two component sensor kinase compare
Atu3707 -2.1 -4.3 phosphoserine aminotransferase compare
Atu3706 -2.1 -7.5 D-3-phosphoglycerate dehydrogenase compare
Atu1750 -2.0 -6.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu2522 -2.0 -11.5 agrobacterium chromosomal virulence protein B compare
Atu2040 -2.0 -5.2 phosphoserine phosphatase compare
Atu4217 -2.0 -1.9 TetR family transcriptional regulator compare
Atu1470 -2.0 -1.4 Camphor resistance protein compare
Atu0017 -2.0 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0086 -1.9 -2.1 ribosome-binding factor A compare
Atu0030 -1.9 -2.2 phosphocarrier protein HPr compare
Atu1422 -1.9 -8.4 transcriptional regulator, MarR family compare
Atu0679 -1.9 -5.2 ATP phosphoribosyltransferase compare
Atu1364 -1.8 -6.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3469 -1.8 -3.3 phosphoglyceromutase compare
Atu4711 -1.7 -7.0 two component sensor kinase compare
Atu0977 -1.7 -3.1 serine protease DO-like protease compare
Atu0099 -1.7 -5.9 prephenate dehydratase compare
Atu0153 -1.7 -5.9 transcriptional regulator, Fur family compare
Atu0723 -1.7 -2.2 FAD dependent oxidoreductase compare
Atu3754 -1.7 -3.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1354 -1.6 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0041 -1.6 -1.9 glutamine amidotransferase compare
Atu4773 -1.6 -2.3 two component response regulator compare
Atu0784 -1.6 -3.3 hypothetical protein compare
Atu3598 -1.6 -2.5 thiol:disulfide interchange protein compare
Atu1644 -1.5 -4.1 hypothetical protein compare
Atu1646 -1.5 -4.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1845 -1.5 -5.0 phosphoribosylformylglycinamidine synthase I compare
Atu3730 -1.5 -1.2 hypothetical protein compare
Atu0401 -1.5 -3.7 fructokinase compare
Atu1688 -1.5 -5.2 indole-3-glycerol-phosphate synthase compare
Atu1205 -1.4 -8.7 threonine dehydratase compare
Atu1447 -1.4 -1.5 two component sensor kinase compare
Atu2017 -1.4 -1.6 hypothetical protein compare
Atu2439 -1.4 -1.5 hypothetical protein compare
Atu0703 -1.4 -2.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1850 -1.4 -4.1 phosphoribosylformylglycinamidine synthetase II compare
Atu4148 -1.4 -4.9 UDP-glucuronic acid epimerase compare
Atu0486 -1.4 -4.4 dihydroorotate dehydrogenase compare
Atu1308 -1.4 -5.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2207 -1.4 -2.5 two component sensor kinase compare
Atu1705 -1.4 -2.8 SEC-independent protein translocase protein compare
Atu2289 -1.3 -9.8 anthranilate synthase component I and II compare
Atu8167 -1.3 -7.8 putative transmembrane protein compare
Atu1687 -1.3 -6.0 anthranilate phosphoribosyltransferase compare
Atu1647 -1.3 -6.9 ABC transporter, membrane spanning protein compare
Atu2237 -1.3 -5.5 cytochrome c1 compare
Atu0031 -1.3 -1.5 PTS system, IIA component compare
Atu0162 -1.2 -4.4 biopolymer transport protein compare
Atu2590 -1.2 -6.6 hypothetical protein compare
Atu2790 -1.2 -2.3 3-isopropylmalate dehydratase, small subunit compare
Atu1141 -1.2 -3.6 Phosphoribosylglycinamide synthetase compare
Atu0434 -1.2 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0331 -1.2 -1.8 sigma-54 modulation protein compare
Atu0580 -1.2 -1.8 flagellar biosynthetic protein compare
Atu2640 -1.2 -3.4 hypothetical protein compare
Atu2584 -1.2 -5.8 hypothetical protein compare
Atu2264 -1.2 -7.4 2-isopropylmalate synthase compare
Atu1645 -1.1 -5.6 ABC transporter, substrate binding protein compare
Atu1904 -1.1 -3.8 transcriptional regulator compare
Atu2592 -1.1 -4.7 hypothetical protein compare
Atu1902 -1.1 -4.1 transketolase compare
Atu3885 -1.1 -4.9 inositol monophosphatase compare
Atu0912 -1.1 -1.3 Na+/H+ antiporter compare
Atu0026 -1.1 -1.2 hypothetical protein compare
Atu0647 -1.1 -4.4 phosphoribosylamine--glycine ligase compare
Atu4161 -1.1 -1.6 hypothetical protein compare
Atu0189 -1.1 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0085 -1.1 -4.2 tRNA pseudouridine 55 synthase compare
Atu2791 -1.1 -5.0 3-isopropylmalate dehydrogenase compare
Atu2073 -1.1 -2.6 membrane protein compare
Atu3755 -1.1 -3.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2184 -1.0 -3.7 transcriptional regulator, AsnC family compare
Atu3727 -1.0 -3.2 hypothetical protein compare
Atu2441 -1.0 -2.4 RNA methylase compare
Atu3353 -1.0 -5.6 mannose-1-phosphate guanylyltransferase compare
Atu0895 -1.0 -2.8 ABC transporter, substrate binding protein compare
Atu0163 -1.0 -4.5 tonB protein compare
Atu1140 -1.0 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0976 -1.0 -3.1 cycL protein compare
Atu2709 -1.0 -8.1 3-isopropylmalate dehydratase, large subunit compare
Atu3485 -1.0 -5.7 short chain dehydrogenase compare
Atu1513 -1.0 -4.6 ABC excinuclease subunit A compare
Atu2662 -1.0 -1.2 acetyltransferase compare
Atu0298 -1.0 -5.1 orotidine 5 compare
Atu8138 -1.0 -1.6 hypothetical protein compare
Atu0572 -1.0 -3.4 hypothetical protein compare
Atu5430 -1.0 -1.2 hypothetical protein compare
Atu2591 -1.0 -4.7 glucosyltransferase compare
Atu0161 -1.0 -6.4 biopolymer transport protein compare
Atu2718 -1.0 -3.9 homoserine O-succinyltransferase compare
Atu2238 -1.0 -4.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1468 -1.0 -4.8 hypothetical protein compare
Atu0062 -1.0 -4.9 transcriptional regulator, ROK family compare
Atu0029 -1.0 -3.4 S-adenosylhomocysteine hydrolase compare
Atu1075 -1.0 -4.5 amidophosphoribosyltransferase compare
Atu2832 -1.0 -2.9 tRNA modification GTPase compare
Atu0419 -0.9 -2.1 two component sensor kinase compare
Atu2831 -0.9 -4.0 glucose inhibited division protein A compare
Atu3219 -0.9 -6.4 dihydroxy-acid dehydratase compare
Atu3311 -0.9 -7.6 phosphomannose isomerase compare
Atu1844 -0.9 -2.2 Phosphoribosylformylglycinamidine synthetase compare
Atu1803 -0.9 -3.9 cold shock protein compare
Atu2433 -0.9 -1.3 hypothetical protein compare
Atu2583 -0.9 -5.8 glycosyltransferase compare
Atu2824 -0.9 -3.6 hypothetical protein compare
Atu0432 -0.9 -3.9 O-succinylhomoserine sulfhydrylase compare
Atu0894 -0.9 -1.7 ABC transporter, membrane spanning protein compare
Atu2801 -0.9 -3.7 precorrin-2 C20 methyltransferase compare
Atu4514 -0.9 -2.6 RpiR family transcriptional regulator compare
Atu0188 -0.9 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2113 -0.9 -2.2 N-acetylmuramoyl-L-alanine amidase compare
Atu2798 -0.9 -2.9 precorrin-6y methyltransferase compare
Atu0499 -0.8 -4.5 hypothetical protein compare
Atu2577 -0.8 -6.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu1677 -0.8 -3.6 queuine tRNA-ribosyltransferase compare
Atu5125 -0.8 -3.1 GntR family transcriptional regulator compare
Atu0185 -0.8 -1.6 methylglyoxal synthase compare
Atu2585 -0.8 -3.3 hypothetical protein compare
Atu1836 -0.8 -1.6 hypothetical protein compare
Atu0893 -0.8 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0346 -0.8 -1.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu8082 -0.8 -2.0 hypothetical protein compare
Atu2376 -0.8 -1.4 hypothetical protein compare
Atu4149 -0.8 -4.9 UDP-glucose 6-dehydrogenase compare
Atu2582 -0.8 -3.9 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1891 -0.8 -2.4 cobalamin biosynthesis protein compare
Atu2800 -0.8 -2.7 precorrin-3B C17-methyltransferase compare
Atu4346 -0.8 -2.9 hypothetical protein compare
Atu1074 -0.8 -5.4 NAD/NADP dependent oxidoreductase compare
Atu4616 -0.8 -1.5 dTDP-4-dehydrorhamnose reductase compare
Atu1380 -0.8 -4.6 zinc metallopeptidase compare
Atu1327 -0.8 -2.1 NADH-ubiquinone oxidoreductase compare
Atu1077 -0.8 -2.2 DNA repair protein compare
Atu2052 -0.8 -2.7 hypothetical protein compare
Atu2650 -0.8 -5.6 glycerol-3-phosphate dehydrogenase compare
Atu1028 -0.8 -1.7 hypothetical protein compare
Atu1307 -0.8 -2.1 dihydroorotase compare
Atu0142 -0.8 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu0354 -0.8 -1.1 ferric uptake regulator compare
Atu2239 -0.8 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0050 -0.7 -2.8 two component response regulator compare
Atu8161 -0.7 -1.3 hypothetical protein compare
Atu4610 -0.7 -4.5 sugar nucleotide epimerase/dehydratase compare
Atu0036 -0.7 -1.3 hypothetical protein compare
Atu0101 -0.7 -2.6 cytochrome c compare
Atu3609 -0.7 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu1774 -0.7 -2.9 ABC transporter, substrate binding protein (peptide) compare
Atu1527 -0.7 -2.0 nitrogen fixation protein FixS compare
Atu2183 -0.7 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4055 -0.7 -4.1 endo-1,3-1,4-beta-glycanase compare
Atu2333 -0.7 -2.5 ATP-dependent RNA helicase compare
Atu3732 -0.7 -4.3 hemolysin compare
Atu2805 -0.7 -2.8 cobalamin synthesis protein compare
Atu0368 -0.7 -2.9 tRNA pseudouridine synthase I compare
Atu1535 -0.7 -2.9 cytochrome c oxidase, FixQ chain compare
Atu4614 -0.7 -3.7 glycosyltransferase compare
Atu4451 -0.7 -4.6 mannitol 2-dehydrogenase compare
Atu2057 -0.7 -1.7 DNA helicase II compare
Atu1542 -0.7 -3.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4541 -0.7 -2.8 carboxymuconolactone decarboxylase compare
Atu4176 -0.7 -2.5 hypothetical protein compare
Atu0923 -0.7 -2.7 hypothetical protein compare
Atu0340 -0.7 -1.3 SAM dependent methyltransferase compare
Atu3162 -0.7 -3.9 LacI family transcriptional regulator compare
Atu2001 -0.7 -3.9 excinuclease ABC subunit B compare
Atu1099 -0.7 -3.1 hypothetical protein compare
Atu0375 -0.7 -1.6 small heat shock protein compare
Atu1076 -0.7 -2.1 colicin V production protein compare
Atu3798 -0.7 -3.7 TetR family transcriptional regulator compare
Atu0978 -0.6 -2.8 two component response regulator compare
Atu0562 -0.6 -2.1 flagellar motor switch protein FliN compare
Atu0190 -0.6 -2.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2464 -0.6 -1.8 formyltetrahydrofolate deformylase compare
Atu3971 -0.6 -4.6 dihydroxy-acid dehydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms