Experiment set12IT068 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2036 -7.0 -14.1 acetolactate synthase III, large subunit compare
Atu1030 -5.2 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0041 -4.9 -3.3 glutamine amidotransferase compare
Atu0039 -4.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0769 -4.5 -3.1 protoheme IX farnesyltransferase compare
Atu4217 -4.2 -2.5 TetR family transcriptional regulator compare
Atu1470 -3.8 -1.9 Camphor resistance protein compare
Atu2057 -3.8 -3.6 DNA helicase II compare
Atu0086 -3.6 -1.7 ribosome-binding factor A compare
Atu2728 -3.6 -4.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0537 -3.6 -9.7 histidinol dehydrogenase compare
Atu2040 -3.5 -5.5 phosphoserine phosphatase compare
Atu0678 -3.5 -6.1 histidyl-tRNA synthetase compare
Atu0679 -3.5 -6.6 ATP phosphoribosyltransferase compare
Atu3706 -3.5 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu1750 -3.5 -6.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1513 -3.3 -7.7 ABC excinuclease subunit A compare
Atu0912 -3.3 -1.6 Na+/H+ antiporter compare
Atu0399 -3.3 -7.7 dihydroorotase compare
Atu0038 -3.2 -3.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1588 -3.2 -10.4 homoserine dehydrogenase compare
Atu3763 -3.2 -2.2 hypothetical protein compare
Atu0040 -3.2 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3908 -3.1 -13.7 GntR family transcriptional regulator compare
Atu0026 -3.0 -1.5 hypothetical protein compare
Atu6098 -2.9 -1.5 transcriptional regulator, HTH family compare
Atu3754 -2.8 -5.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0031 -2.8 -1.7 PTS system, IIA component compare
Atu2439 -2.8 -2.0 hypothetical protein compare
Atu0030 -2.8 -1.9 phosphocarrier protein HPr compare
Atu3469 -2.7 -4.1 phosphoglyceromutase compare
Atu0043 -2.6 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu1141 -2.4 -4.7 Phosphoribosylglycinamide synthetase compare
Atu1446 -2.4 -3.2 two component response regulator compare
Atu1129 -2.3 -6.8 excinuclease ABC chain C compare
Atu3707 -2.3 -3.1 phosphoserine aminotransferase compare
Atu1645 -2.3 -10.2 ABC transporter, substrate binding protein compare
Atu1417 -2.2 -7.4 enoyl-CoA hydratase compare
Atu0894 -2.2 -3.3 ABC transporter, membrane spanning protein compare
Atu2718 -2.1 -8.0 homoserine O-succinyltransferase compare
Atu1205 -2.1 -11.9 threonine dehydratase compare
Atu1644 -2.1 -3.2 hypothetical protein compare
Atu0421 -2.1 -1.8 ABC transporter, membrane spanning protein compare
Atu0723 -2.1 -2.1 FAD dependent oxidoreductase compare
Atu2125 -2.0 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2684 -2.0 -2.2 hypothetical protein compare
Atu3885 -2.0 -7.4 inositol monophosphatase compare
Atu1646 -2.0 -5.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1647 -1.9 -7.0 ABC transporter, membrane spanning protein compare
Atu1163 -1.9 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2067 -1.9 -1.3 hypothetical protein compare
Atu1874 -1.9 -3.7 RecA protein compare
Atu0141 -1.9 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu0647 -1.8 -5.3 phosphoribosylamine--glycine ligase compare
Atu2239 -1.8 -5.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1364 -1.8 -4.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1359 -1.8 -1.3 dnaK deletion suppressor protein compare
Atu2803 -1.8 -5.1 Cobalamin biosynthesis associated protein compare
Atu0331 -1.7 -2.3 sigma-54 modulation protein compare
Atu0971 -1.7 -3.8 two component sensor kinase compare
Atu3755 -1.7 -3.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1705 -1.7 -3.8 SEC-independent protein translocase protein compare
Atu0486 -1.7 -5.5 dihydroorotate dehydrogenase compare
Atu2790 -1.6 -2.1 3-isopropylmalate dehydratase, small subunit compare
Atu2800 -1.6 -3.1 precorrin-3B C17-methyltransferase compare
Atu0269 -1.6 -3.8 exodeoxyribonuclease VII large subunit compare
Atu0784 -1.6 -4.2 hypothetical protein compare
Atu0361 -1.6 -2.8 transcriptional regulator compare
Atu1714 -1.6 -1.7 exonuclease III compare
Atu1140 -1.6 -5.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0142 -1.6 -2.8 cytochrome o ubiquinol oxidase subunit II compare
Atu1845 -1.5 -3.8 phosphoribosylformylglycinamidine synthase I compare
Atu1075 -1.5 -5.6 amidophosphoribosyltransferase compare
Atu1021 -1.5 -3.3 outer membrane protein compare
Atu5430 -1.5 -1.9 hypothetical protein compare
Atu0298 -1.5 -5.8 orotidine 5 compare
Atu2237 -1.5 -4.3 cytochrome c1 compare
Atu2464 -1.5 -2.9 formyltetrahydrofolate deformylase compare
Atu4317 -1.5 -1.8 TetR family transcriptional regulator compare
Atu1354 -1.4 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3712 -1.4 -1.8 hypothetical protein compare
Atu1850 -1.4 -2.7 phosphoribosylformylglycinamidine synthetase II compare
Atu1589 -1.4 -4.6 aminotransferase, class I compare
Atu0029 -1.4 -5.8 S-adenosylhomocysteine hydrolase compare
Atu3353 -1.4 -8.0 mannose-1-phosphate guanylyltransferase compare
Atu3730 -1.4 -1.4 hypothetical protein compare
Atu2640 -1.4 -4.1 hypothetical protein compare
Atu6020 -1.4 -4.4 conserved hypothetical protein compare
Atu2207 -1.4 -2.2 two component sensor kinase compare
Atu0099 -1.4 -5.9 prephenate dehydratase compare
Atu1308 -1.3 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2163 -1.3 -1.0 hypothetical protein compare
Atu6021 -1.3 -9.4 D-nopaline dehydrogenase compare
Atu1229 -1.3 -1.8 hypothetical protein compare
Atu6019 -1.3 -9.5 D-nopaline dehydrogenase compare
Atu4616 -1.3 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu1028 -1.3 -2.3 hypothetical protein compare
Atu4711 -1.3 -5.0 two component sensor kinase compare
Atu8087 -1.3 -1.1 putative peptidoglycan binding protein compare
Atu3311 -1.3 -7.7 phosphomannose isomerase compare
Atu0025 -1.3 -2.0 hypothetical protein compare
Atu2001 -1.3 -4.9 excinuclease ABC subunit B compare
Atu1677 -1.2 -3.3 queuine tRNA-ribosyltransferase compare
Atu2832 -1.2 -2.8 tRNA modification GTPase compare
Atu2592 -1.2 -5.5 hypothetical protein compare
Atu2615 -1.2 -4.0 hypothetical protein compare
Atu0190 -1.2 -4.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3739 -1.2 -2.5 phosphoglycerate kinase compare
Atu1468 -1.2 -4.9 hypothetical protein compare
Atu1307 -1.2 -3.3 dihydroorotase compare
Atu1566 -1.2 -1.2 hypothetical protein compare
Atu2200 -1.2 -1.8 cold shock protein compare
Atu2591 -1.2 -6.0 glucosyltransferase compare
Atu1810 -1.2 -1.1 hypothetical protein compare
Atu1077 -1.1 -2.6 DNA repair protein compare
Atu2052 -1.1 -4.2 hypothetical protein compare
Atu8191 -1.1 -1.7 hypothetical protein compare
Atu2585 -1.1 -3.7 hypothetical protein compare
Atu4418 -1.1 -4.8 glutaryl-CoA dehydrogenase compare
Atu0660 -1.1 -4.6 hydrolase compare
Atu0893 -1.1 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0703 -1.1 -1.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2791 -1.1 -5.0 3-isopropylmalate dehydrogenase compare
Atu1902 -1.1 -2.9 transketolase compare
Atu0977 -1.1 -2.9 serine protease DO-like protease compare
Atu1699 -1.1 -2.4 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu6114 -1.1 -1.9 hypothetical protein compare
Atu2289 -1.1 -7.4 anthranilate synthase component I and II compare
Atu2590 -1.1 -5.7 hypothetical protein compare
Atu0153 -1.1 -2.7 transcriptional regulator, Fur family compare
Atu2379 -1.1 -6.6 phosphomannomutase compare
Atu0017 -1.1 -2.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0062 -1.1 -4.3 transcriptional regulator, ROK family compare
Atu1687 -1.1 -6.1 anthranilate phosphoribosyltransferase compare
Atu1688 -1.0 -2.8 indole-3-glycerol-phosphate synthase compare
Atu1685 -1.0 -0.9 hypothetical protein compare
Atu5125 -1.0 -3.0 GntR family transcriptional regulator compare
Atu2577 -1.0 -7.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0923 -1.0 -4.0 hypothetical protein compare
Atu4072 -1.0 -1.0 nodulation protein N compare
Atu0895 -1.0 -2.2 ABC transporter, substrate binding protein compare
Atu8082 -1.0 -2.0 hypothetical protein compare
Atu2584 -1.0 -4.2 hypothetical protein compare
Atu0400 -1.0 -2.6 orotate phosphoribosyltransferase compare
Atu2555 -1.0 -2.6 L-lysine 2,3-aminomutase compare
Atu2073 -1.0 -2.5 membrane protein compare
Atu4346 -0.9 -4.1 hypothetical protein compare
Atu4223 -0.9 -1.6 sarcosine oxidase delta subunit compare
Atu1844 -0.9 -2.0 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -0.9 -5.5 glycerol-3-phosphate dehydrogenase compare
Atu1099 -0.9 -3.3 hypothetical protein compare
Atu8167 -0.9 -5.2 putative transmembrane protein compare
Atu2522 -0.9 -7.0 agrobacterium chromosomal virulence protein B compare
Atu1176 -0.9 -2.5 hypothetical protein compare
Atu0115 -0.9 -0.8 hypothetical protein compare
Atu1062 -0.9 -1.4 phosphatidylserine synthase compare
Atu4610 -0.9 -3.4 sugar nucleotide epimerase/dehydratase compare
Atu0876 -0.8 -1.5 superoxide dismutase compare
Atu1339 -0.8 -2.0 ribonuclease E compare
Atu4148 -0.8 -3.2 UDP-glucuronic acid epimerase compare
Atu2831 -0.8 -2.7 glucose inhibited division protein A compare
Atu1891 -0.8 -2.0 cobalamin biosynthesis protein compare
Atu3009 -0.8 -0.8 exopolysaccharide production protein compare
Atu8138 -0.8 -1.3 hypothetical protein compare
Atu3727 -0.8 -1.6 hypothetical protein compare
Atu0432 -0.8 -3.7 O-succinylhomoserine sulfhydrylase compare
Atu3486 -0.8 -2.2 DeoR family transcriptional regulator compare
Atu1467 -0.8 -1.8 hypothetical protein compare
Atu2183 -0.8 -3.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0711 -0.8 -4.7 potassium uptake protein compare
Atu0499 -0.8 -3.3 hypothetical protein compare
Atu4149 -0.8 -4.5 UDP-glucose 6-dehydrogenase compare
Atu6165 -0.8 -0.9 hypothetical protein compare
Atu1760 -0.8 -0.9 hypothetical protein compare
Atu1708 -0.8 -3.1 hypothetical protein compare
Atu1774 -0.8 -2.7 ABC transporter, substrate binding protein (peptide) compare
Atu3604 -0.8 -1.7 hypoxanthine phosphoribosyltransferase compare
Atu4446 -0.8 -3.8 hypothetical protein compare
Atu0824 -0.8 -0.9 hypothetical protein compare
Atu1039 -0.8 -2.0 DNA repair protein RecO compare
Atu3150 -0.8 -2.2 sugar ABC transporter permease compare
Atu2274 -0.8 -3.4 cation efflux system protein compare
Atu2238 -0.8 -3.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1327 -0.8 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0101 -0.8 -2.5 cytochrome c compare
Atu4139 -0.8 -2.2 hypothetical protein compare
Atu2267 -0.8 -4.0 hypothetical protein compare
Atu3572 -0.8 -3.6 transcriptional regulator compare
Atu2616 -0.7 -3.4 hypothetical protein compare
Atu1175 -0.7 -1.0 hypothetical protein compare
Atu3121 -0.7 -1.0 cold shock protein compare
Atu2217 -0.7 -2.6 hypothetical protein compare
Atu2192 -0.7 -0.9 hypothetical protein compare
Atu0051 -0.7 -2.4 two component sensor kinase compare
Atu1906 -0.7 -3.9 ABC transporter, membrane spanning protein compare
Atu2797 -0.7 -1.7 cobalamin biosynthesis protein compare
Atu0973 -0.7 -3.4 cycH protein compare
Atu2583 -0.7 -4.9 glycosyltransferase compare
Atu2807 -0.7 -2.9 cob(I)alamin adenosyltransferase compare
Atu1620 -0.7 -4.5 triosephosphate isomerase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms