Experiment set12IT065 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1359 -5.0 -1.8 dnaK deletion suppressor protein compare
Atu0043 -4.4 -4.2 imidazoleglycerol-phosphate dehydratase compare
Atu4072 -4.2 -3.0 nodulation protein N compare
Atu2439 -3.8 -1.9 hypothetical protein compare
Atu1030 -3.8 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2036 -3.6 -14.7 acetolactate synthase III, large subunit compare
Atu0769 -3.3 -2.7 protoheme IX farnesyltransferase compare
Atu3763 -3.2 -2.2 hypothetical protein compare
Atu1417 -3.0 -7.4 enoyl-CoA hydratase compare
Atu0331 -2.9 -4.4 sigma-54 modulation protein compare
Atu3908 -2.9 -13.2 GntR family transcriptional regulator compare
Atu4317 -2.7 -4.5 TetR family transcriptional regulator compare
Atu0399 -2.7 -6.1 dihydroorotase compare
Atu1588 -2.6 -9.3 homoserine dehydrogenase compare
Atu2040 -2.6 -7.4 phosphoserine phosphatase compare
Atu0030 -2.6 -2.0 phosphocarrier protein HPr compare
Atu2554 -2.5 -3.4 lysyl-tRNA synthetase compare
Atu0031 -2.5 -1.7 PTS system, IIA component compare
Atu0086 -2.4 -1.3 ribosome-binding factor A compare
Atu2728 -2.4 -4.2 beta (1-->2) glucan export ATP-binding protein compare
Atu0038 -2.3 -5.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1513 -2.3 -6.3 ABC excinuclease subunit A compare
Atu2464 -2.3 -4.0 formyltetrahydrofolate deformylase compare
Atu0678 -2.3 -7.4 histidyl-tRNA synthetase compare
Atu2125 -2.2 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu3730 -2.1 -2.0 hypothetical protein compare
Atu3707 -2.1 -2.8 phosphoserine aminotransferase compare
Atu0039 -2.0 -2.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3754 -2.0 -7.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1644 -2.0 -4.5 hypothetical protein compare
Atu1129 -2.0 -6.8 excinuclease ABC chain C compare
Atu0040 -2.0 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0537 -2.0 -6.9 histidinol dehydrogenase compare
Atu0679 -1.9 -7.0 ATP phosphoribosyltransferase compare
Atu1902 -1.9 -4.6 transketolase compare
Atu0400 -1.8 -4.4 orotate phosphoribosyltransferase compare
Atu0977 -1.8 -4.7 serine protease DO-like protease compare
Atu2718 -1.8 -6.4 homoserine O-succinyltransferase compare
Atu2684 -1.8 -1.5 hypothetical protein compare
Atu1705 -1.8 -4.7 SEC-independent protein translocase protein compare
Atu0298 -1.8 -5.1 orotidine 5 compare
Atu3755 -1.7 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3706 -1.7 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu5430 -1.7 -1.8 hypothetical protein compare
Atu1850 -1.7 -3.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1470 -1.7 -1.7 Camphor resistance protein compare
Atu1750 -1.7 -5.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu6098 -1.7 -1.2 transcriptional regulator, HTH family compare
Atu1845 -1.7 -3.6 phosphoribosylformylglycinamidine synthase I compare
Atu1307 -1.7 -5.4 dihydroorotase compare
Atu1646 -1.6 -5.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0895 -1.5 -3.6 ABC transporter, substrate binding protein compare
Atu0486 -1.5 -4.0 dihydroorotate dehydrogenase compare
Atu3885 -1.5 -6.2 inositol monophosphatase compare
Atu3469 -1.5 -2.8 phosphoglyceromutase compare
Atu2832 -1.5 -4.1 tRNA modification GTPase compare
Atu0647 -1.5 -6.0 phosphoribosylamine--glycine ligase compare
Atu1205 -1.5 -9.0 threonine dehydratase compare
Atu0723 -1.5 -2.0 FAD dependent oxidoreductase compare
Atu2073 -1.4 -5.1 membrane protein compare
Atu0354 -1.4 -2.4 ferric uptake regulator compare
Atu1645 -1.4 -6.8 ABC transporter, substrate binding protein compare
Atu1647 -1.4 -6.5 ABC transporter, membrane spanning protein compare
Atu1687 -1.4 -7.5 anthranilate phosphoribosyltransferase compare
Atu1141 -1.4 -5.5 Phosphoribosylglycinamide synthetase compare
Atu0184 -1.4 -2.6 glucokinase compare
Atu1163 -1.4 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0432 -1.4 -6.3 O-succinylhomoserine sulfhydrylase compare
Atu1075 -1.4 -6.2 amidophosphoribosyltransferase compare
Atu3598 -1.4 -1.7 thiol:disulfide interchange protein compare
Atu1308 -1.4 -3.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0029 -1.4 -3.2 S-adenosylhomocysteine hydrolase compare
Atu2238 -1.3 -7.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1140 -1.3 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2286 -1.3 -2.0 hypothetical protein compare
Atu2831 -1.3 -3.6 glucose inhibited division protein A compare
Atu2017 -1.3 -1.3 hypothetical protein compare
Atu2001 -1.3 -5.0 excinuclease ABC subunit B compare
Atu3727 -1.3 -3.5 hypothetical protein compare
Atu2616 -1.2 -5.7 hypothetical protein compare
Atu2289 -1.2 -9.6 anthranilate synthase component I and II compare
Atu0099 -1.2 -6.4 prephenate dehydratase compare
Atu2207 -1.2 -2.5 two component sensor kinase compare
Atu1688 -1.2 -5.0 indole-3-glycerol-phosphate synthase compare
Atu8054 -1.2 -1.0 hypothetical protein compare
Atu0876 -1.2 -2.1 superoxide dismutase compare
Atu0041 -1.2 -1.3 glutamine amidotransferase compare
Atu2791 -1.2 -6.8 3-isopropylmalate dehydrogenase compare
Atu3608 -1.2 -5.4 hypothetical protein compare
Atu0062 -1.2 -6.9 transcriptional regulator, ROK family compare
Atu1467 -1.2 -3.6 hypothetical protein compare
Atu2640 -1.2 -4.3 hypothetical protein compare
Atu1028 -1.2 -2.3 hypothetical protein compare
Atu0025 -1.2 -1.9 hypothetical protein compare
Atu0153 -1.2 -3.6 transcriptional regulator, Fur family compare
Atu0401 -1.2 -4.5 fructokinase compare
Atu5125 -1.1 -4.1 GntR family transcriptional regulator compare
Atu2052 -1.1 -5.1 hypothetical protein compare
Atu1364 -1.1 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2184 -1.1 -4.7 transcriptional regulator, AsnC family compare
Atu1620 -1.1 -6.2 triosephosphate isomerase compare
Atu1904 -1.1 -3.7 transcriptional regulator compare
Atu1327 -1.1 -2.3 NADH-ubiquinone oxidoreductase compare
Atu8032 -1.1 -2.4 hypothetical protein compare
Atu1844 -1.0 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu0784 -1.0 -1.7 hypothetical protein compare
Atu2709 -1.0 -7.5 3-isopropylmalate dehydratase, large subunit compare
Atu1468 -1.0 -4.1 hypothetical protein compare
Atu0361 -1.0 -1.7 transcriptional regulator compare
Atu1446 -1.0 -1.6 two component response regulator compare
Atu0141 -1.0 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu1077 -1.0 -2.7 DNA repair protein compare
Atu0149 -1.0 -3.2 enoyl-(acyl-carrier-protein) reductase compare
Atu1774 -1.0 -5.0 ABC transporter, substrate binding protein (peptide) compare
Atu2239 -1.0 -2.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0812 -1.0 -1.9 hypothetical protein compare
Atu2237 -1.0 -4.4 cytochrome c1 compare
Atu0499 -0.9 -5.4 hypothetical protein compare
Atu1570 -0.9 -0.7 hypothetical protein compare
Atu1810 -0.9 -1.0 hypothetical protein compare
Atu3075 -0.9 -3.6 TetR family transcriptional regulator compare
Atu0971 -0.9 -2.3 two component sensor kinase compare
Atu3009 -0.9 -1.1 exopolysaccharide production protein compare
Atu0269 -0.9 -2.3 exodeoxyribonuclease VII large subunit compare
Atu0434 -0.9 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu5470 -0.9 -0.9 hypothetical protein compare
Atu0101 -0.9 -1.5 cytochrome c compare
Atu4346 -0.9 -4.8 hypothetical protein compare
Atu3732 -0.9 -5.3 hemolysin compare
Atu3485 -0.9 -5.9 short chain dehydrogenase compare
Atu2113 -0.9 -2.8 N-acetylmuramoyl-L-alanine amidase compare
Atu2433 -0.9 -1.0 hypothetical protein compare
Atu0894 -0.9 -1.7 ABC transporter, membrane spanning protein compare
Atu2586 -0.9 -6.4 ABC transporter, nucleotide binding/ATPase protein (oligopeptide) compare
Atu6114 -0.9 -1.4 hypothetical protein compare
Atu4711 -0.9 -3.8 two component sensor kinase compare
Atu2522 -0.9 -5.6 agrobacterium chromosomal virulence protein B compare
Atu2799 -0.8 -2.5 precorrin-6x reductase compare
Atu2264 -0.8 -5.1 2-isopropylmalate synthase compare
Atu6021 -0.8 -5.9 D-nopaline dehydrogenase compare
Atu1074 -0.8 -4.6 NAD/NADP dependent oxidoreductase compare
Atu2824 -0.8 -2.3 hypothetical protein compare
Atu2274 -0.8 -3.8 cation efflux system protein compare
Atu0660 -0.8 -4.4 hydrolase compare
Atu0703 -0.8 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1447 -0.8 -1.7 two component sensor kinase compare
Atu0017 -0.8 -1.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0205 -0.8 -5.2 methylmalonate-semialdehyde dehydrogenase compare
Atu8191 -0.8 -1.4 hypothetical protein compare
Atu2798 -0.8 -2.5 precorrin-6y methyltransferase compare
Atu1530 -0.8 -5.4 nitrogen fixation protein FixG compare
Atu2124 -0.8 -2.8 transcriptional regulator, ArsR family compare
Atu1683 -0.8 -1.3 hypothetical protein compare
Atu1242 -0.8 -4.8 cytochrome oxidase assembly factor compare
Atu4217 -0.8 -0.7 TetR family transcriptional regulator compare
Atu2578 -0.8 -3.7 cAMP-dependent protein kinase regulatory subunit compare
Atu1099 -0.8 -3.8 hypothetical protein compare
Atu0687 -0.8 -1.6 hypothetical protein compare
Atu2589 -0.8 -4.5 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu0188 -0.8 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0711 -0.8 -4.3 potassium uptake protein compare
Atu1589 -0.8 -3.2 aminotransferase, class I compare
Atu0346 -0.8 -1.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu8162 -0.8 -1.0 hypothetical protein compare
Atu2585 -0.8 -3.1 hypothetical protein compare
Atu2193 -0.8 -0.7 hypothetical protein compare
Atu0638 -0.8 -1.6 hypothetical protein compare
Atu8087 -0.8 -0.8 putative peptidoglycan binding protein compare
Atu0368 -0.8 -2.9 tRNA pseudouridine synthase I compare
Atu3400 -0.7 -2.8 hypothetical protein compare
Atu1529 -0.7 -4.1 nitrogen fixation protein FixH compare
Atu1891 -0.7 -2.4 cobalamin biosynthesis protein compare
Atu1380 -0.7 -3.2 zinc metallopeptidase compare
Atu0886 -0.7 -1.0 hypothetical protein compare
Atu1537 -0.7 -5.0 cytochrome-c oxidase, FixN chain compare
Atu0577 -0.7 -3.3 FLAF protein compare
Atu8118 -0.7 -2.9 putative universal stress protein compare
Atu3603 -0.7 -1.6 two component response regulator compare
Atu2127 -0.7 -3.9 L-carnitine dehydratase compare
Atu4099 -0.7 -3.0 hypothetical protein compare
Atu0756 -0.7 -3.6 phosphoglycerate mutase compare
Atu2484 -0.7 -1.1 hypothetical protein compare
Atu1302 -0.7 -1.6 hypothetical protein compare
Atu1580 -0.7 -3.9 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu3744 -0.7 -4.1 ABC transporter permease compare
Atu5443 -0.7 -2.8 TetR family transcriptional regulator compare
Atu0770 -0.7 -3.3 cytochrome C oxidase assembly protein compare
Atu4418 -0.7 -3.2 glutaryl-CoA dehydrogenase compare
Atu1204 -0.7 -3.0 potassium uptake protein compare
Atu5160 -0.7 -1.6 transcriptional regulator protein compare
Atu4773 -0.7 -0.6 two component response regulator compare
Atu2793 -0.7 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu2809 -0.7 -3.5 cobalamin biosynthesis protein compare
Atu3647 -0.7 -1.6 hypothetical protein compare
Atu8115 -0.7 -3.5 Hypothetical Protein compare
Atu0768 -0.7 -4.5 cytochrome-c oxidase chain I compare
Atu1039 -0.7 -2.0 DNA repair protein RecO compare
Atu0502 -0.7 -3.5 acetyl-CoA acetyltransferase compare
Atu0201 -0.7 -1.2 hypothetical protein compare
Atu2802 -0.7 -2.9 precorrin-8X methylmutase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms