Experiment set12IT062 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu0038 -6.9 -5.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -6.0 -15.0 acetolactate synthase III, large subunit compare
Atu1030 -5.4 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0041 -5.1 -2.9 glutamine amidotransferase compare
Atu1750 -4.8 -5.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -4.8 -8.3 histidinol dehydrogenase compare
Atu2040 -4.8 -6.4 phosphoserine phosphatase compare
Atu0678 -4.3 -9.1 histidyl-tRNA synthetase compare
Atu0039 -4.0 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu3707 -3.7 -3.4 phosphoserine aminotransferase compare
Atu0679 -3.7 -5.6 ATP phosphoribosyltransferase compare
Atu0769 -3.4 -2.5 protoheme IX farnesyltransferase compare
Atu1588 -3.4 -8.6 homoserine dehydrogenase compare
Atu0040 -3.3 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3763 -3.3 -1.9 hypothetical protein compare
Atu6098 -3.3 -1.3 transcriptional regulator, HTH family compare
Atu3908 -3.2 -11.1 GntR family transcriptional regulator compare
Atu0043 -3.2 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu3706 -3.1 -5.0 D-3-phosphoglycerate dehydrogenase compare
Atu1810 -3.1 -1.2 hypothetical protein compare
Atu0031 -3.0 -1.5 PTS system, IIA component compare
Atu1417 -3.0 -10.8 enoyl-CoA hydratase compare
Atu1129 -3.0 -8.3 excinuclease ABC chain C compare
Atu3885 -2.8 -10.9 inositol monophosphatase compare
Atu2728 -2.7 -4.9 beta (1-->2) glucan export ATP-binding protein compare
Atu0399 -2.7 -6.7 dihydroorotase compare
Atu0030 -2.7 -1.7 phosphocarrier protein HPr compare
Atu1513 -2.6 -5.7 ABC excinuclease subunit A compare
Atu3754 -2.6 -7.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0331 -2.6 -2.3 sigma-54 modulation protein compare
Atu2718 -2.4 -7.8 homoserine O-succinyltransferase compare
Atu2439 -2.4 -1.7 hypothetical protein compare
Atu0971 -2.4 -4.2 two component sensor kinase compare
Atu3469 -2.4 -3.6 phosphoglyceromutase compare
Atu1644 -2.3 -3.7 hypothetical protein compare
Atu1850 -2.3 -3.7 phosphoribosylformylglycinamidine synthetase II compare
Atu3730 -2.3 -1.8 hypothetical protein compare
Atu2057 -2.2 -3.2 DNA helicase II compare
Atu2684 -2.2 -1.8 hypothetical protein compare
Atu1141 -2.2 -6.7 Phosphoribosylglycinamide synthetase compare
Atu1619 -2.2 -3.0 protein-export membrane protein SECG compare
Atu3755 -2.2 -6.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1163 -2.1 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0099 -2.1 -7.8 prephenate dehydratase compare
Atu1205 -2.1 -10.1 threonine dehydratase compare
Atu0361 -2.0 -2.2 transcriptional regulator compare
Atu1845 -2.0 -3.9 phosphoribosylformylglycinamidine synthase I compare
Atu0723 -2.0 -2.3 FAD dependent oxidoreductase compare
Atu2464 -2.0 -3.2 formyltetrahydrofolate deformylase compare
Atu0354 -1.9 -2.4 ferric uptake regulator compare
Atu1364 -1.9 -5.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1075 -1.9 -5.1 amidophosphoribosyltransferase compare
Atu4317 -1.8 -2.5 TetR family transcriptional regulator compare
Atu8087 -1.8 -1.1 putative peptidoglycan binding protein compare
Atu2554 -1.8 -2.6 lysyl-tRNA synthetase compare
Atu0401 -1.8 -3.9 fructokinase compare
Atu1308 -1.8 -5.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0876 -1.7 -2.2 superoxide dismutase compare
Atu0434 -1.7 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0784 -1.7 -3.1 hypothetical protein compare
Atu0432 -1.6 -7.4 O-succinylhomoserine sulfhydrylase compare
Atu0029 -1.6 -5.6 S-adenosylhomocysteine hydrolase compare
Atu1687 -1.6 -7.9 anthranilate phosphoribosyltransferase compare
Atu1354 -1.5 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2662 -1.5 -1.3 acetyltransferase compare
Atu0647 -1.5 -4.5 phosphoribosylamine--glycine ligase compare
Atu1902 -1.5 -4.5 transketolase compare
Atu0298 -1.5 -5.4 orotidine 5 compare
Atu8191 -1.5 -1.8 hypothetical protein compare
Atu1645 -1.5 -5.6 ABC transporter, substrate binding protein compare
Atu1705 -1.5 -5.0 SEC-independent protein translocase protein compare
Atu2001 -1.5 -4.9 excinuclease ABC subunit B compare
Atu1647 -1.5 -4.3 ABC transporter, membrane spanning protein compare
Atu1688 -1.5 -4.9 indole-3-glycerol-phosphate synthase compare
Atu4217 -1.5 -1.1 TetR family transcriptional regulator compare
Atu3727 -1.5 -3.1 hypothetical protein compare
Atu0941 -1.4 -0.9 hypothetical protein compare
Atu2584 -1.4 -4.0 hypothetical protein compare
Atu1140 -1.4 -3.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5125 -1.4 -4.0 GntR family transcriptional regulator compare
Atu1581 -1.4 -2.2 hypothetical protein compare
Atu6021 -1.4 -9.2 D-nopaline dehydrogenase compare
Atu2592 -1.4 -5.3 hypothetical protein compare
Atu1028 -1.4 -2.1 hypothetical protein compare
Atu0977 -1.4 -2.9 serine protease DO-like protease compare
Atu1774 -1.3 -5.6 ABC transporter, substrate binding protein (peptide) compare
Atu0346 -1.3 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3775 -1.3 -1.1 hypothetical protein compare
Atu0086 -1.3 -1.2 ribosome-binding factor A compare
Atu1646 -1.3 -4.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu2555 -1.3 -3.4 L-lysine 2,3-aminomutase compare
Atu3353 -1.3 -6.4 mannose-1-phosphate guanylyltransferase compare
Atu1844 -1.3 -2.6 Phosphoribosylformylglycinamidine synthetase compare
Atu6020 -1.3 -3.9 conserved hypothetical protein compare
Atu2052 -1.3 -5.4 hypothetical protein compare
Atu1447 -1.3 -2.8 two component sensor kinase compare
Atu1679 -1.3 -1.7 peptidyl prolyl cis-trans isomerase compare
Atu4149 -1.3 -7.8 UDP-glucose 6-dehydrogenase compare
Atu3008 -1.2 -0.8 hypothetical protein compare
Atu4148 -1.2 -4.0 UDP-glucuronic acid epimerase compare
Atu2207 -1.2 -2.0 two component sensor kinase compare
Atu2583 -1.2 -6.7 glycosyltransferase compare
Atu2289 -1.2 -7.8 anthranilate synthase component I and II compare
Atu4072 -1.1 -1.0 nodulation protein N compare
Atu2640 -1.1 -3.0 hypothetical protein compare
Atu1359 -1.1 -0.8 dnaK deletion suppressor protein compare
Atu1714 -1.1 -1.3 exonuclease III compare
Atu0400 -1.1 -2.7 orotate phosphoribosyltransferase compare
Atu0017 -1.1 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu6019 -1.1 -7.8 D-nopaline dehydrogenase compare
Atu8138 -1.1 -1.0 hypothetical protein compare
Atu2796 -1.1 -3.5 precorrin-4 C11-methyltransferase compare
Atu1606 -1.1 -3.2 methionine aminopeptidase compare
Atu2831 -1.1 -3.6 glucose inhibited division protein A compare
Atu0201 -1.1 -1.6 hypothetical protein compare
Atu1566 -1.1 -1.0 hypothetical protein compare
Atu1467 -1.1 -2.3 hypothetical protein compare
Atu2791 -1.1 -4.9 3-isopropylmalate dehydrogenase compare
Atu0141 -1.1 -0.9 cytochrome O ubiquinol oxidase subunit I compare
Atu2073 -1.1 -4.4 membrane protein compare
Atu2577 -1.1 -8.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0142 -1.1 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu0225 -1.1 -0.7 hypothetical protein compare
Atu1803 -1.1 -5.2 cold shock protein compare
Atu2183 -1.1 -4.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1468 -1.0 -6.0 hypothetical protein compare
Atu2709 -1.0 -7.6 3-isopropylmalate dehydratase, large subunit compare
Atu4418 -1.0 -3.4 glutaryl-CoA dehydrogenase compare
Atu0486 -1.0 -2.6 dihydroorotate dehydrogenase compare
Atu0703 -1.0 -2.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3423 -1.0 -1.7 hypothetical protein compare
Atu1874 -1.0 -1.6 RecA protein compare
Atu2591 -1.0 -4.0 glucosyltransferase compare
Atu0786 -1.0 -3.9 peptidase, family M16 compare
Atu3121 -1.0 -1.1 cold shock protein compare
Atu2264 -1.0 -5.9 2-isopropylmalate synthase compare
Atu3598 -1.0 -1.6 thiol:disulfide interchange protein compare
Atu2746 -1.0 -1.9 hypothetical protein compare
Atu0190 -1.0 -3.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0894 -1.0 -1.5 ABC transporter, membrane spanning protein compare
Atu1307 -1.0 -1.5 dihydroorotase compare
Atu1344 -1.0 -1.2 hypothetical protein compare
Atu1980 -1.0 -1.9 hypothetical protein compare
Atu1620 -1.0 -5.8 triosephosphate isomerase compare
Atu3311 -1.0 -5.9 phosphomannose isomerase compare
Atu4050 -0.9 -1.5 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2616 -0.9 -3.7 hypothetical protein compare
Atu2798 -0.9 -3.4 precorrin-6y methyltransferase compare
Atu2238 -0.9 -3.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0205 -0.9 -5.2 methylmalonate-semialdehyde dehydrogenase compare
Atu3075 -0.9 -4.2 TetR family transcriptional regulator compare
Atu2790 -0.9 -1.1 3-isopropylmalate dehydratase, small subunit compare
Atu1589 -0.9 -2.7 aminotransferase, class I compare
Atu4711 -0.9 -3.0 two component sensor kinase compare
Atu2267 -0.9 -2.1 hypothetical protein compare
Atu2578 -0.9 -3.3 cAMP-dependent protein kinase regulatory subunit compare
Atu3608 -0.9 -3.4 hypothetical protein compare
Atu2184 -0.9 -3.4 transcriptional regulator, AsnC family compare
Atu2634 -0.9 -1.5 hypothetical protein compare
Atu0499 -0.9 -3.9 hypothetical protein compare
Atu1904 -0.9 -2.3 transcriptional regulator compare
Atu2615 -0.9 -3.2 hypothetical protein compare
Atu0101 -0.9 -3.1 cytochrome c compare
Atu2217 -0.9 -2.0 hypothetical protein compare
Atu4677 -0.9 -0.9 hypothetical protein compare
Atu8035 -0.9 -1.3 hypothetical protein compare
Atu0062 -0.9 -3.9 transcriptional regulator, ROK family compare
Atu2590 -0.9 -4.4 hypothetical protein compare
Atu5146 -0.9 -1.6 hypothetical protein compare
Atu2650 -0.9 -5.2 glycerol-3-phosphate dehydrogenase compare
Atu0368 -0.8 -3.2 tRNA pseudouridine synthase I compare
Atu5010 -0.8 -1.7 hypothetical protein compare
Atu3835 -0.8 -1.7 hypothetical protein compare
Atu1260 -0.8 -1.0 hypothetical protein compare
Atu0544 -0.8 -1.5 hypothetical protein compare
Atu4610 -0.8 -5.3 sugar nucleotide epimerase/dehydratase compare
Atu3248 -0.8 -3.4 cell division inhibitor compare
Atu3663 -0.8 -1.0 hypothetical protein compare
Atu8167 -0.8 -4.9 putative transmembrane protein compare
Atu3634 -0.8 -2.2 penicillin-binding protein dacf precursor compare
Atu2237 -0.8 -2.8 cytochrome c1 compare
Atu8151 -0.8 -1.3 hypothetical protein compare
Atu3486 -0.8 -2.1 DeoR family transcriptional regulator compare
Atu0923 -0.8 -2.9 hypothetical protein compare
Atu1683 -0.8 -1.0 hypothetical protein compare
Atu0025 -0.8 -1.2 hypothetical protein compare
Atu0050 -0.8 -3.4 two component response regulator compare
Atu0687 -0.8 -1.4 hypothetical protein compare
Atu0986 -0.8 -0.8 hypothetical protein compare
Atu0488 -0.8 -1.7 hypothetical protein compare
Atu1074 -0.8 -5.1 NAD/NADP dependent oxidoreductase compare
Atu0662 -0.8 -3.1 transcriptional regulator, GntR family compare
Atu0689 -0.8 -4.4 ribosomal large subunit pseudouridine synthase B compare
Atu2799 -0.8 -2.6 precorrin-6x reductase compare
Atu1739 -0.8 -2.1 permease compare
Atu5157 -0.8 -1.7 hypothetical protein compare
Atu1213 -0.8 -1.7 hypothetical protein compare
Atu0659 -0.8 -3.3 NTP pyrophosphohydrolase, MutT family compare
Atu3739 -0.8 -1.6 phosphoglycerate kinase compare
Atu0036 -0.8 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms