Experiment set12IT061 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2036 -5.4 -18.1 acetolactate synthase III, large subunit compare
Atu1030 -5.3 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0041 -5.0 -2.9 glutamine amidotransferase compare
Atu0679 -3.4 -6.8 ATP phosphoribosyltransferase compare
Atu0769 -3.3 -2.4 protoheme IX farnesyltransferase compare
Atu0039 -3.3 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1588 -3.3 -10.4 homoserine dehydrogenase compare
Atu3763 -3.2 -1.9 hypothetical protein compare
Atu6098 -3.2 -1.4 transcriptional regulator, HTH family compare
Atu0043 -3.2 -2.7 imidazoleglycerol-phosphate dehydratase compare
Atu1844 -3.1 -3.2 Phosphoribosylformylglycinamidine synthetase compare
Atu2684 -3.0 -2.3 hypothetical protein compare
Atu1750 -3.0 -6.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu3707 -2.9 -3.2 phosphoserine aminotransferase compare
Atu0086 -2.9 -1.7 ribosome-binding factor A compare
Atu1470 -2.9 -1.7 Camphor resistance protein compare
Atu1417 -2.8 -8.3 enoyl-CoA hydratase compare
Atu0678 -2.8 -5.6 histidyl-tRNA synthetase compare
Atu4217 -2.8 -1.9 TetR family transcriptional regulator compare
Atu0537 -2.7 -5.7 histidinol dehydrogenase compare
Atu1513 -2.5 -5.6 ABC excinuclease subunit A compare
Atu0031 -2.5 -1.5 PTS system, IIA component compare
Atu0038 -2.4 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2728 -2.4 -4.6 beta (1-->2) glucan export ATP-binding protein compare
Atu3469 -2.4 -3.6 phosphoglyceromutase compare
Atu3598 -2.4 -2.6 thiol:disulfide interchange protein compare
Atu1141 -2.4 -4.9 Phosphoribosylglycinamide synthetase compare
Atu2057 -2.4 -3.3 DNA helicase II compare
Atu1845 -2.3 -5.6 phosphoribosylformylglycinamidine synthase I compare
Atu3754 -2.3 -7.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0486 -2.3 -4.5 dihydroorotate dehydrogenase compare
Atu0971 -2.3 -4.4 two component sensor kinase compare
Atu2439 -2.3 -1.6 hypothetical protein compare
Atu0040 -2.3 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1129 -2.3 -8.9 excinuclease ABC chain C compare
Atu3755 -2.3 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1644 -2.2 -3.7 hypothetical protein compare
Atu0399 -2.2 -5.8 dihydroorotase compare
Atu1021 -2.2 -2.6 outer membrane protein compare
Atu0784 -2.1 -3.2 hypothetical protein compare
Atu0894 -2.1 -3.2 ABC transporter, membrane spanning protein compare
Atu3706 -2.1 -5.5 D-3-phosphoglycerate dehydrogenase compare
Atu2040 -2.1 -6.9 phosphoserine phosphatase compare
Atu0331 -2.1 -3.0 sigma-54 modulation protein compare
Atu2207 -2.0 -3.5 two component sensor kinase compare
Atu1364 -2.0 -4.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3885 -2.0 -5.9 inositol monophosphatase compare
Atu0029 -1.9 -4.9 S-adenosylhomocysteine hydrolase compare
Atu1359 -1.9 -1.1 dnaK deletion suppressor protein compare
Atu2832 -1.9 -3.1 tRNA modification GTPase compare
Atu2464 -1.9 -3.0 formyltetrahydrofolate deformylase compare
Atu0912 -1.9 -1.3 Na+/H+ antiporter compare
Atu8054 -1.8 -1.1 hypothetical protein compare
Atu1647 -1.8 -7.8 ABC transporter, membrane spanning protein compare
Atu3908 -1.8 -5.9 GntR family transcriptional regulator compare
Atu1308 -1.8 -4.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3121 -1.8 -1.5 cold shock protein compare
Atu1075 -1.8 -6.6 amidophosphoribosyltransferase compare
Atu2052 -1.8 -5.6 hypothetical protein compare
Atu1645 -1.7 -6.0 ABC transporter, substrate binding protein compare
Atu0723 -1.7 -1.9 FAD dependent oxidoreductase compare
Atu0017 -1.7 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1307 -1.7 -4.8 dihydroorotase compare
Atu0386 -1.6 -1.9 hypothetical protein compare
Atu0298 -1.6 -4.1 orotidine 5 compare
Atu1705 -1.5 -3.2 SEC-independent protein translocase protein compare
Atu0400 -1.5 -2.7 orotate phosphoribosyltransferase compare
Atu4072 -1.5 -1.7 nodulation protein N compare
Atu1902 -1.5 -3.4 transketolase compare
Atu1874 -1.5 -3.0 RecA protein compare
Atu1140 -1.5 -4.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1646 -1.4 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1468 -1.4 -5.6 hypothetical protein compare
Atu2001 -1.4 -5.9 excinuclease ABC subunit B compare
Atu3353 -1.4 -7.5 mannose-1-phosphate guanylyltransferase compare
Atu0893 -1.4 -3.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2073 -1.4 -4.7 membrane protein compare
Atu2274 -1.4 -6.1 cation efflux system protein compare
Atu1850 -1.4 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2379 -1.4 -5.5 phosphomannomutase compare
Atu0030 -1.4 -1.3 phosphocarrier protein HPr compare
Atu2718 -1.4 -4.9 homoserine O-succinyltransferase compare
Atu2616 -1.3 -4.7 hypothetical protein compare
Atu2615 -1.3 -4.4 hypothetical protein compare
Atu0647 -1.3 -3.4 phosphoribosylamine--glycine ligase compare
Atu2555 -1.3 -3.3 L-lysine 2,3-aminomutase compare
Atu0340 -1.3 -1.9 SAM dependent methyltransferase compare
Atu3739 -1.3 -2.2 phosphoglycerate kinase compare
Atu4317 -1.3 -2.0 TetR family transcriptional regulator compare
Atu0895 -1.2 -2.5 ABC transporter, substrate binding protein compare
Atu8138 -1.2 -1.5 hypothetical protein compare
Atu0361 -1.2 -2.0 transcriptional regulator compare
Atu1714 -1.2 -1.3 exonuclease III compare
Atu0346 -1.2 -2.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2640 -1.2 -2.1 hypothetical protein compare
Atu1685 -1.2 -0.9 hypothetical protein compare
Atu0777 -1.2 -0.8 hypothetical protein compare
Atu0977 -1.2 -2.1 serine protease DO-like protease compare
Atu1205 -1.2 -7.3 threonine dehydratase compare
Atu1327 -1.1 -2.3 NADH-ubiquinone oxidoreductase compare
Atu0824 -1.1 -1.1 hypothetical protein compare
Atu2239 -1.1 -2.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0795 -1.1 -1.5 hypothetical protein compare
Atu3311 -1.1 -6.7 phosphomannose isomerase compare
Atu0499 -1.1 -5.5 hypothetical protein compare
Atu4711 -1.1 -3.1 two component sensor kinase compare
Atu4166 -1.1 -1.4 UDP-glucose 4-epimerase compare
Atu0036 -1.1 -1.4 hypothetical protein compare
Atu5125 -1.1 -3.9 GntR family transcriptional regulator compare
Atu1163 -1.1 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0062 -1.1 -4.7 transcriptional regulator, ROK family compare
Atu6019 -1.1 -8.1 D-nopaline dehydrogenase compare
Atu4099 -1.1 -4.4 hypothetical protein compare
Atu4610 -1.0 -4.9 sugar nucleotide epimerase/dehydratase compare
Atu4882 -1.0 -1.6 hypothetical protein compare
Atu0703 -1.0 -1.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0580 -1.0 -1.5 flagellar biosynthetic protein compare
Atu0660 -1.0 -4.2 hydrolase compare
Atu2238 -1.0 -4.8 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1062 -1.0 -1.3 phosphatidylserine synthase compare
Atu1099 -1.0 -3.7 hypothetical protein compare
Atu0401 -1.0 -3.9 fructokinase compare
Atu1904 -1.0 -2.1 transcriptional regulator compare
Atu2025 -1.0 -2.4 transcriptional regulator compare
Atu0809 -1.0 -0.9 hypothetical protein compare
Atu2192 -1.0 -1.0 hypothetical protein compare
Atu0269 -1.0 -3.3 exodeoxyribonuclease VII large subunit compare
Atu6020 -1.0 -5.0 conserved hypothetical protein compare
Atu1535 -1.0 -1.3 cytochrome c oxidase, FixQ chain compare
Atu6021 -1.0 -6.2 D-nopaline dehydrogenase compare
Atu0205 -1.0 -6.1 methylmalonate-semialdehyde dehydrogenase compare
Atu0153 -1.0 -3.1 transcriptional regulator, Fur family compare
Atu1446 -1.0 -1.3 two component response regulator compare
Atu2801 -1.0 -3.0 precorrin-2 C20 methyltransferase compare
Atu2522 -1.0 -6.2 agrobacterium chromosomal virulence protein B compare
Atu4616 -1.0 -1.0 dTDP-4-dehydrorhamnose reductase compare
Atu0149 -1.0 -2.3 enoyl-(acyl-carrier-protein) reductase compare
Atu1592 -0.9 -3.3 hypothetical protein compare
Atu0976 -0.9 -2.9 cycL protein compare
Atu0842 -0.9 -1.4 hypothetical protein compare
Atu0354 -0.9 -1.3 ferric uptake regulator compare
Atu4618 -0.9 -5.3 dTDP-rhamnose-3,5-epimerase compare
Atu0050 -0.9 -2.7 two component response regulator compare
Atu0923 -0.9 -2.8 hypothetical protein compare
Atu0190 -0.9 -4.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5010 -0.9 -2.0 hypothetical protein compare
Atu1779 -0.9 -1.4 hypothetical protein compare
Atu2183 -0.9 -3.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1291 -0.9 -1.5 hypothetical protein compare
Atu1007 -0.9 -1.7 hypothetical protein compare
Atu2824 -0.9 -2.0 hypothetical protein compare
Atu0885 -0.8 -1.5 hypothetical protein compare
Atu2554 -0.8 -1.4 lysyl-tRNA synthetase compare
Atu8167 -0.8 -5.0 putative transmembrane protein compare
Atu5513 -0.8 -1.5 cold shock protein compare
Atu0973 -0.8 -3.8 cycH protein compare
Atu3744 -0.8 -4.9 ABC transporter permease compare
Atu2237 -0.8 -3.7 cytochrome c1 compare
Atu0099 -0.8 -3.8 prephenate dehydratase compare
Atu2798 -0.8 -2.7 precorrin-6y methyltransferase compare
Atu1589 -0.8 -2.5 aminotransferase, class I compare
Atu2442 -0.8 -1.0 hypothetical protein compare
Atu0025 -0.8 -1.2 hypothetical protein compare
Atu6131 -0.8 -3.2 TraR Antiactivator compare
Atu1620 -0.8 -4.6 triosephosphate isomerase compare
Atu1463 -0.8 -2.8 glycine cleavage system component H compare
Atu0101 -0.8 -1.7 cytochrome c compare
Atu2650 -0.8 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu4148 -0.8 -2.8 UDP-glucuronic acid epimerase compare
Atu1469 -0.8 -1.9 hypothetical protein compare
Atu1847 -0.8 -1.2 hypothetical protein compare
Atu0162 -0.8 -2.4 biopolymer transport protein compare
Atu3608 -0.8 -2.4 hypothetical protein compare
Atu1467 -0.8 -2.7 hypothetical protein compare
Atu8161 -0.8 -1.1 hypothetical protein compare
Atu8087 -0.8 -0.5 putative peptidoglycan binding protein compare
Atu2289 -0.8 -5.9 anthranilate synthase component I and II compare
Atu2791 -0.8 -3.6 3-isopropylmalate dehydrogenase compare
Atu1739 -0.8 -2.3 permease compare
Atu1511 -0.8 -1.6 hypothetical protein compare
Atu0771 -0.8 -3.2 cytochrome c oxidase subunit III compare
Atu1581 -0.8 -1.0 hypothetical protein compare
Atu0432 -0.8 -3.5 O-succinylhomoserine sulfhydrylase compare
Atu3613 -0.8 -2.3 hypothetical protein compare
Atu8144 -0.8 -2.4 hypothetical protein compare
Atu1103 -0.8 -1.4 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1803 -0.8 -2.4 cold shock protein compare
Atu6045 -0.7 -1.2 replication protein C compare
Atu2127 -0.7 -4.2 L-carnitine dehydratase compare
Atu2805 -0.7 -2.9 cobalamin synthesis protein compare
Atu8156 -0.7 -1.4 hypothetical protein compare
Atu1074 -0.7 -3.7 NAD/NADP dependent oxidoreductase compare
Atu1252 -0.7 -2.7 hypothetical protein compare
Atu3963 -0.7 -3.8 GntR family transcriptional regulator compare
Atu3604 -0.7 -1.4 hypoxanthine phosphoribosyltransferase compare
Atu1747 -0.7 -1.9 hypothetical protein compare
Atu4617 -0.7 -3.4 dTDP-D-glucose-4,6-dehydratase compare
Atu0161 -0.7 -4.7 biopolymer transport protein compare
Atu0661 -0.7 -5.3 glycosyltransferase compare
Atu3572 -0.7 -3.6 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms