Experiment set12IT060 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2040 -6.0 -5.8 phosphoserine phosphatase compare
Atu0038 -5.6 -4.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -5.3 -14.2 acetolactate synthase III, large subunit compare
Atu1030 -5.1 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0769 -4.3 -2.4 protoheme IX farnesyltransferase compare
Atu0537 -4.3 -8.7 histidinol dehydrogenase compare
Atu0678 -4.1 -7.9 histidyl-tRNA synthetase compare
Atu2728 -4.0 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0723 -4.0 -2.5 FAD dependent oxidoreductase compare
Atu0141 -3.9 -1.9 cytochrome O ubiquinol oxidase subunit I compare
Atu0679 -3.9 -6.3 ATP phosphoribosyltransferase compare
Atu1750 -3.7 -4.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1417 -3.6 -7.8 enoyl-CoA hydratase compare
Atu4317 -3.6 -3.0 TetR family transcriptional regulator compare
Atu2125 -3.3 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0041 -3.3 -2.9 glutamine amidotransferase compare
Atu3706 -3.3 -9.9 D-3-phosphoglycerate dehydrogenase compare
Atu1141 -3.2 -5.4 Phosphoribosylglycinamide synthetase compare
Atu1844 -3.2 -3.2 Phosphoribosylformylglycinamidine synthetase compare
Atu1354 -3.2 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3707 -3.2 -3.0 phosphoserine aminotransferase compare
Atu0043 -3.1 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu1588 -3.1 -7.1 homoserine dehydrogenase compare
Atu3763 -3.0 -1.7 hypothetical protein compare
Atu0039 -3.0 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu3730 -3.0 -1.9 hypothetical protein compare
Atu1810 -2.9 -1.1 hypothetical protein compare
Atu0361 -2.8 -3.9 transcriptional regulator compare
Atu0895 -2.8 -3.8 ABC transporter, substrate binding protein compare
Atu3754 -2.8 -4.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2684 -2.8 -2.0 hypothetical protein compare
Atu0784 -2.7 -3.9 hypothetical protein compare
Atu2633 -2.7 -2.3 RhtB family transporter compare
Atu2439 -2.7 -1.5 hypothetical protein compare
Atu3598 -2.7 -1.5 thiol:disulfide interchange protein compare
Atu0030 -2.7 -1.5 phosphocarrier protein HPr compare
Atu3885 -2.6 -7.6 inositol monophosphatase compare
Atu2718 -2.6 -6.2 homoserine O-succinyltransferase compare
Atu1850 -2.6 -3.6 phosphoribosylformylglycinamidine synthetase II compare
Atu1647 -2.6 -9.1 ABC transporter, membrane spanning protein compare
Atu1129 -2.6 -7.2 excinuclease ABC chain C compare
Atu3755 -2.5 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1447 -2.4 -2.8 two component sensor kinase compare
Atu3469 -2.4 -3.0 phosphoglyceromutase compare
Atu0399 -2.4 -5.7 dihydroorotase compare
Atu1446 -2.3 -2.2 two component response regulator compare
Atu0017 -2.3 -3.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1163 -2.2 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0031 -2.2 -1.2 PTS system, IIA component compare
Atu3908 -2.2 -10.4 GntR family transcriptional regulator compare
Atu1513 -2.2 -5.4 ABC excinuclease subunit A compare
Atu1619 -2.2 -2.1 protein-export membrane protein SECG compare
Atu2207 -2.1 -3.8 two component sensor kinase compare
Atu0040 -2.1 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0647 -2.0 -5.7 phosphoribosylamine--glycine ligase compare
Atu0971 -2.0 -3.7 two component sensor kinase compare
Atu4072 -2.0 -1.5 nodulation protein N compare
Atu0941 -2.0 -0.9 hypothetical protein compare
Atu1021 -2.0 -2.7 outer membrane protein compare
Atu1980 -1.9 -2.8 hypothetical protein compare
Atu0331 -1.9 -1.8 sigma-54 modulation protein compare
Atu1646 -1.9 -4.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2052 -1.9 -6.2 hypothetical protein compare
Atu0298 -1.9 -5.4 orotidine 5 compare
Atu2555 -1.9 -3.1 L-lysine 2,3-aminomutase compare
Atu1845 -1.8 -3.3 phosphoribosylformylglycinamidine synthase I compare
Atu1308 -1.8 -3.3 aspartate carbamoyl transferase catalytic subunit compare
Atu0977 -1.8 -3.7 serine protease DO-like protease compare
Atu0400 -1.8 -2.7 orotate phosphoribosyltransferase compare
Atu4773 -1.7 -1.4 two component response regulator compare
Atu1364 -1.7 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1760 -1.7 -1.2 hypothetical protein compare
Atu5173 -1.7 -2.4 dehydrogenase compare
Atu4711 -1.7 -4.4 two component sensor kinase compare
Atu2057 -1.6 -2.4 DNA helicase II compare
Atu0346 -1.6 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0886 -1.6 -1.3 hypothetical protein compare
Atu2193 -1.6 -0.9 hypothetical protein compare
Atu2237 -1.6 -3.4 cytochrome c1 compare
Atu8138 -1.6 -1.5 hypothetical protein compare
Atu0142 -1.6 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu1570 -1.6 -0.7 hypothetical protein compare
Atu0190 -1.6 -4.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3353 -1.6 -6.9 mannose-1-phosphate guanylyltransferase compare
Atu1140 -1.5 -3.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2729 -1.5 -2.3 hypothetical protein compare
Atu0953 -1.5 -0.9 hypothetical protein compare
Atu4166 -1.5 -1.3 UDP-glucose 4-epimerase compare
Atu0893 -1.4 -3.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu0486 -1.4 -2.9 dihydroorotate dehydrogenase compare
Atu2217 -1.4 -2.7 hypothetical protein compare
Atu1075 -1.4 -5.2 amidophosphoribosyltransferase compare
Atu4223 -1.4 -1.4 sarcosine oxidase delta subunit compare
Atu3121 -1.4 -1.1 cold shock protein compare
Atu1688 -1.4 -3.3 indole-3-glycerol-phosphate synthase compare
Atu2289 -1.4 -8.2 anthranilate synthase component I and II compare
Atu1182 -1.4 -1.5 hypothetical protein compare
Atu6021 -1.4 -7.9 D-nopaline dehydrogenase compare
Atu4148 -1.4 -3.9 UDP-glucuronic acid epimerase compare
Atu0894 -1.4 -1.9 ABC transporter, membrane spanning protein compare
Atu1902 -1.3 -3.4 transketolase compare
Atu1645 -1.3 -3.5 ABC transporter, substrate binding protein compare
Atu2379 -1.3 -5.0 phosphomannomutase compare
Atu0269 -1.3 -2.5 exodeoxyribonuclease VII large subunit compare
Atu0432 -1.3 -5.6 O-succinylhomoserine sulfhydrylase compare
Atu2650 -1.3 -5.7 glycerol-3-phosphate dehydrogenase compare
Atu0050 -1.3 -3.2 two component response regulator compare
Atu2464 -1.3 -2.4 formyltetrahydrofolate deformylase compare
Atu1818 -1.3 -1.8 hypothetical protein compare
Atu2791 -1.3 -5.2 3-isopropylmalate dehydrogenase compare
Atu6020 -1.3 -3.9 conserved hypothetical protein compare
Atu2073 -1.3 -4.7 membrane protein compare
Atu2790 -1.3 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu2591 -1.3 -4.2 glucosyltransferase compare
Atu0912 -1.3 -0.9 Na+/H+ antiporter compare
Atu6019 -1.3 -8.9 D-nopaline dehydrogenase compare
Atu2183 -1.3 -4.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3017 -1.3 -0.9 phosphoglyceromutase compare
Atu1205 -1.3 -6.2 threonine dehydratase compare
Atu1468 -1.3 -4.9 hypothetical protein compare
Atu0025 -1.2 -1.6 hypothetical protein compare
Atu1687 -1.2 -4.6 anthranilate phosphoribosyltransferase compare
Atu3311 -1.2 -6.9 phosphomannose isomerase compare
Atu0746 -1.2 -2.0 hypothetical protein compare
Atu0795 -1.2 -1.7 hypothetical protein compare
Atu2001 -1.2 -3.8 excinuclease ABC subunit B compare
Atu4610 -1.2 -5.0 sugar nucleotide epimerase/dehydratase compare
Atu1714 -1.2 -1.1 exonuclease III compare
Atu0976 -1.2 -1.6 cycL protein compare
Atu1074 -1.2 -5.3 NAD/NADP dependent oxidoreductase compare
Atu0086 -1.2 -1.0 ribosome-binding factor A compare
Atu1904 -1.1 -2.5 transcriptional regulator compare
Atu1028 -1.1 -1.2 hypothetical protein compare
Atu0703 -1.1 -1.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2606 -1.1 -2.8 transcriptional regulator, GntR family compare
Atu1529 -1.1 -4.2 nitrogen fixation protein FixH compare
Atu1644 -1.1 -1.6 hypothetical protein compare
Atu3461 -1.1 -1.4 GntR family transcriptional regulator compare
Atu2239 -1.1 -2.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2657 -1.1 -1.1 hypothetical protein compare
Atu0099 -1.1 -4.2 prephenate dehydratase compare
Atu2368 -1.1 -1.1 hypothetical protein compare
Atu2801 -1.1 -2.7 precorrin-2 C20 methyltransferase compare
Atu2640 -1.1 -2.6 hypothetical protein compare
Atu1527 -1.1 -3.7 nitrogen fixation protein FixS compare
Atu2710 -1.1 -3.1 hypothetical protein compare
Atu1503 -1.1 -0.8 hypothetical protein compare
Atu3465 -1.1 -1.6 metallo-beta-lactamase superfamily protein compare
Atu3215 -1.0 -1.9 oligopeptide ABC transporter ATPase compare
Atu0062 -1.0 -4.2 transcriptional regulator, ROK family compare
Atu3739 -1.0 -1.2 phosphoglycerate kinase compare
Atu1359 -1.0 -0.7 dnaK deletion suppressor protein compare
Atu4618 -1.0 -6.0 dTDP-rhamnose-3,5-epimerase compare
Atu1537 -1.0 -5.9 cytochrome-c oxidase, FixN chain compare
Atu0026 -1.0 -0.7 hypothetical protein compare
Atu1099 -1.0 -3.0 hypothetical protein compare
Atu2274 -1.0 -4.4 cation efflux system protein compare
Atu0051 -1.0 -2.9 two component sensor kinase compare
Atu0422 -1.0 -0.9 ABC transporter, membrane spanning protein compare
Atu2270 -1.0 -1.2 ATP-dependent Clp protease, proteolytic subunit compare
Atu1307 -1.0 -2.7 dihydroorotase compare
Atu2063 -1.0 -1.2 hypothetical protein compare
Atu2831 -1.0 -2.8 glucose inhibited division protein A compare
Atu1679 -1.0 -1.2 peptidyl prolyl cis-trans isomerase compare
Atu1103 -0.9 -1.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1184 -0.9 -1.2 hypothetical protein compare
Atu2616 -0.9 -2.9 hypothetical protein compare
Atu1534 -0.9 -3.9 cytochrome-c oxidase, FixP chain compare
Atu1470 -0.9 -0.7 Camphor resistance protein compare
Atu0660 -0.9 -3.9 hydrolase compare
Atu2554 -0.9 -1.1 lysyl-tRNA synthetase compare
Atu1705 -0.9 -1.7 SEC-independent protein translocase protein compare
Atu3963 -0.9 -3.4 GntR family transcriptional regulator compare
Atu2335 -0.9 -1.1 hypothetical protein compare
Atu1581 -0.9 -1.3 hypothetical protein compare
Atu4149 -0.9 -4.4 UDP-glucose 6-dehydrogenase compare
Atu4803 -0.9 -3.9 two component response regulator compare
Atu0029 -0.9 -3.0 S-adenosylhomocysteine hydrolase compare
Atu5160 -0.9 -2.0 transcriptional regulator protein compare
Atu4050 -0.9 -1.7 UTP-glucose-1-phosphate uridylyltransferase compare
Atu1589 -0.9 -3.7 aminotransferase, class I compare
Atu3609 -0.9 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu8012 -0.9 -1.0 hypothetical protein compare
Atu0149 -0.9 -1.4 enoyl-(acyl-carrier-protein) reductase compare
Atu0401 -0.9 -2.8 fructokinase compare
Atu0413 -0.9 -1.4 stress induced protein compare
Atu1803 -0.9 -2.1 cold shock protein compare
Atu1892 -0.9 -1.9 hypothetical protein compare
Atu5034 -0.8 -1.1 hypothetical protein compare
Atu6131 -0.8 -2.5 TraR Antiactivator compare
Atu1530 -0.8 -5.0 nitrogen fixation protein FixG compare
Atu0923 -0.8 -2.8 hypothetical protein compare
Atu0535 -0.8 -2.0 hypothetical protein compare
Atu1620 -0.8 -3.9 triosephosphate isomerase compare
Atu3342 -0.8 -3.1 trehalose utilization-like protein compare
Atu2577 -0.8 -4.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1056 -0.8 -3.0 hypothetical protein compare
Atu4613 -0.8 -4.9 glycosyltransferase compare
Atu0544 -0.8 -1.3 hypothetical protein compare
Atu0687 -0.8 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms