Experiment set12IT060 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most detrimental genes:

  gene name fitness t score description  
Atu0645 +1.5 1.3 hypothetical protein compare
Atu4232 +1.5 8.6 GntR family transcriptional regulator compare
Atu1287 +1.4 4.2 hypothetical protein compare
Atu8032 +1.4 3.7 hypothetical protein compare
Atu1636 +1.1 2.2 hypothetical protein compare
Atu2787 +1.1 1.0 hypothetical protein compare
Atu0496 +1.1 3.5 hypothetical protein compare
Atu1326 +1.0 2.4 acetyltransferase compare
Atu5121 +1.0 5.1 two component response regulator compare
Atu0690 +1.0 1.8 hypothetical protein compare
Atu3678 +0.9 2.1 siderophore biosynthesis protein compare
Atu4626 +0.9 3.0 oligopeptide ABC transporter substrate-binding protein compare
Atu1460 +0.9 4.0 hypothetical protein compare
Atu6166 +0.9 7.0 two component sensor kinase compare
Atu0762 +0.9 1.9 hypothetical protein compare
Atu1019 +0.9 2.4 hypothetical protein compare
Atu2249 +0.9 1.1 hypothetical protein compare
Atu8039 +0.8 2.3 hypothetical protein compare
Atu0809 +0.8 1.0 hypothetical protein compare
Atu1009 +0.8 1.6 hypothetical protein compare
Atu1102 +0.8 1.6 hypothetical protein compare
Atu3026 +0.8 3.0 short chain dehydrogenase compare
Atu8162 +0.8 0.7 hypothetical protein compare
Atu2472 +0.8 1.4 hypothetical protein compare
Atu1466 +0.8 1.4 hypothetical protein compare
Atu2348 +0.8 3.8 sugar binding protein compare
Atu0267 +0.8 1.3 hypothetical protein compare
Atu0899 +0.8 2.3 dihydrodipicolinate synthase compare
Atu1254 +0.8 0.7 transcriptional regulator, ArsR family compare
Atu6178 +0.8 4.8 two component response regulator compare
Atu2382 +0.8 1.1 hypothetical protein compare
Atu4779 +0.8 1.4 hypothetical protein compare
Atu3718 +0.8 0.9 hypothetical protein compare
Atu2694 +0.7 1.1 hypothetical protein compare
Atu3267 +0.7 1.4 dipeptide ABC transporter permease compare
Atu1043 +0.7 1.4 hypothetical protein compare
Atu2462 +0.7 1.2 hypothetical protein compare
Atu3851 +0.7 1.9 hypothetical protein compare
Atu2783 +0.7 2.1 acetyltransferase compare
Atu2349 +0.7 1.4 hypothetical protein compare
Atu1517 +0.7 2.8 hypothetical protein compare
Atu2129 +0.7 2.5 hypothetical protein compare
Atu4527 +0.7 1.1 hypothetical protein compare
Atu4342 +0.7 1.7 hypothetical protein compare
Atu1113 +0.7 2.5 dehydrogenase compare
Atu1098 +0.7 1.7 hypothetical protein compare
Atu2702 +0.7 1.8 hypothetical protein compare
Atu0386 +0.7 1.3 hypothetical protein compare
Atu4095 +0.7 2.7 hypothetical protein compare
Atu0445 +0.7 1.0 hypothetical protein compare
Atu5430 +0.7 0.7 hypothetical protein compare
Atu1437 +0.7 2.5 hypothetical protein compare
Atu4380 +0.7 2.8 Crp family transcriptional regulator compare
Atu5107 +0.6 3.1 hypothetical protein compare
Atu2352 +0.6 1.2 hypothetical protein compare
Atu3915 +0.6 2.0 MerR family transcriptional regulator compare
Atu1531 +0.6 3.0 hypothetical protein compare
Atu0382 +0.6 1.4 hypothetical protein compare
Atu3067 +0.6 1.7 hypothetical protein compare
Atu8085 +0.6 2.7 hypothetical protein compare
Atu0934 +0.6 2.1 hypothetical protein compare
Atu0805 +0.6 1.6 hypothetical protein compare
Atu3036 +0.6 1.5 dipeptide ABC transporter permease compare
Atu0297 +0.6 1.6 hypothetical protein compare
Atu2286 +0.6 0.9 hypothetical protein compare
Atu1003 +0.6 2.2 hypothetical protein compare
Atu3603 +0.6 1.2 two component response regulator compare
Atu1683 +0.6 1.1 hypothetical protein compare
Atu0966 +0.6 1.3 hypothetical protein compare
Atu3214 +0.6 1.9 oligopeptide ABC transporter permease compare
Atu0119 +0.6 0.7 hypothetical protein compare
Atu1440 +0.6 1.8 hypothetical protein compare
Atu0097 +0.6 1.6 hypothetical protein compare
Atu1495 +0.6 1.3 hypothetical protein compare
Atu3183 +0.6 0.5 hypothetical protein compare
Atu4006 +0.6 1.7 AsnC family transcriptional regulator compare
Atu8128 +0.6 2.6 putative bacteriophage P2 tail protein compare
Atu0888 +0.6 2.6 transcriptional regulator, MerR family compare
Atu0431 +0.6 2.5 apaG protein compare
Atu0668 +0.6 3.1 hypothetical protein compare
Atu0739 +0.6 2.1 hypothetical protein compare
Atu3158 +0.6 2.0 ABC transporter substrate binding protein compare
Atu3887 +0.6 1.9 small heat shock protein compare
Atu1837 +0.6 1.8 transcriptional regulator compare
Atu4674 +0.6 2.5 GntR family transcriptional regulator compare
Atu8158 +0.6 1.4 hypothetical protein compare
Atu2669 +0.6 1.3 RhtB family transporter compare
Atu8203 +0.6 2.5 hypothetical protein compare
Atu0819 +0.6 1.4 hypothetical protein compare
Atu2738 +0.6 2.1 nucleoside-diphosphate-sugar epimerase compare
Atu1952 +0.6 0.7 hypothetical protein compare
Atu0132 +0.6 1.8 2-deoxyribose-5-phosphate aldolase compare
Atu1125 +0.6 1.2 ABC transporter, membrane spanning protein compare
Atu4081 +0.6 2.4 aspartate racemase compare
Atu5122 +0.6 2.8 3-ketoacyl-ACP reductase compare
Atu3414 +0.6 2.4 AgaE protein compare
Atu0467 +0.6 1.7 hypothetical protein compare
Atu1475 +0.6 1.0 hypothetical protein compare
Atu1984 +0.6 2.1 two component sensor kinase compare
Atu6128 +0.6 2.4 Conjugative pilin processing protease compare
Atu1869 +0.5 1.3 hypothetical protein compare
Atu1533 +0.5 2.9 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein compare
Atu2298 +0.5 1.5 hypothetical protein compare
Atu0232 +0.5 1.8 hypothetical protein compare
Atu4743 +0.5 1.9 LacI family transcriptional regulator compare
Atu1038 +0.5 1.2 two component response regulator compare
Atu2441 +0.5 0.8 RNA methylase compare
Atu4013 +0.5 2.0 adenylate cyclase compare
Atu2680 +0.5 1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2419 +0.5 2.1 transcriptional regulator, LuxR family compare
Atu0566 +0.5 0.8 hypothetical protein compare
Atu1516 +0.5 1.9 hypothetical protein compare
Atu2646 +0.5 1.6 hypothetical protein compare
Atu6181 +0.5 2.2 virA/G regulated topoisomerase compare
Atu8153 +0.5 1.5 hypothetical protein compare
Atu4280 +0.5 1.7 short-chain dehydrogenase compare
Atu8041 +0.5 0.7 hypothetical protein compare
Atu8034 +0.5 1.2 hypothetical protein compare
Atu4890 +0.5 0.8 IS426 transposase compare
Atu0681 +0.5 1.5 hypothetical protein compare
Atu3864 +0.5 1.0 hypothetical protein compare
Atu4409 +0.5 1.1 periplasmic nitrate reductase small subunit compare
Atu1321 +0.5 1.1 hypothetical protein compare
Atu0627 +0.5 1.8 carboxymethylenebutenolidase compare
Atu1399 +0.5 1.4 ABC transporter, substrate binding protein (amino acid) compare
Atu1068 +0.5 2.3 hypothetical protein compare
Atu0220 +0.5 1.8 components of type IV pilus compare
Atu0836 +0.5 1.4 Glutathione-S-transferase compare
Atu2061 +0.5 2.0 hydrolase compare
Atu0195 +0.5 2.5 gluconokinase compare
Atu6168 +0.5 2.4 component of type IV secretion system, pilin subunit compare
Atu0095 +0.5 1.7 hypothetical protein compare
Atu2120 +0.5 1.2 O-methyltransferase compare
Atu5043 +0.5 1.6 hypothetical protein compare
Atu5521 +0.5 2.0 ABC transporter nucleotide binding/ATPase (branched chain amino acid) compare
Atu0926 +0.5 1.8 hypothetical protein compare
Atu1729 +0.5 1.9 putative molybdenum cofactor biosynthesis protein compare
Atu1725 +0.5 1.4 hypothetical protein compare
Atu8180 +0.5 1.4 hypothetical protein compare
Atu5007 +0.5 1.7 santhopine-responsive transcriptional repressor compare
Atu4738 +0.5 1.6 chloramphenicol acetyltransferase compare
Atu4237 +0.5 1.3 hypothetical protein compare
Atu1149 +0.5 0.5 adenylate cyclase compare
Atu0551 +0.5 1.0 flagellar protein FLGA precursor compare
Atu3160 +0.5 1.5 hypothetical protein compare
Atu1240 +0.5 2.2 hypothetical protein compare
Atu2225 +0.5 2.2 transcriptional regulator compare
Atu8150 +0.5 1.5 hypothetical protein compare
Atu0493 +0.5 1.6 hypothetical protein compare
Atu0506 +0.5 1.4 hypothetical protein compare
Atu4857 +0.5 1.6 mobilization protein C compare
Atu0066 +0.5 2.4 putative kinase compare
Atu1423 +0.5 1.3 hypothetical protein compare
Atu3570 +0.5 1.5 hypothetical protein compare
Atu2672 +0.5 2.0 hypothetical protein compare
Atu0884 +0.5 1.2 hypothetical protein compare
Atu8163 +0.5 1.4 hypothetical protein compare
Atu0463 +0.5 1.3 hypothetical protein compare
Atu4053 +0.5 0.5 succinoglycan biosynthesis protein compare
Atu4349 +0.5 2.4 hypothetical protein compare
Atu0964 +0.5 1.9 hypothetical protein compare
Atu0585 +0.5 0.7 hypothetical protein compare
Atu8134 +0.5 1.2 hypothetical protein compare
Atu3384 +0.5 2.3 hypothetical protein compare
Atu1888 +0.5 2.4 two component sensor kinase compare
Atu1608 +0.5 1.8 hypothetical protein compare
Atu3767 +0.5 1.2 diguanylate cyclase compare
Atu8056 +0.5 0.5 hypothetical protein compare
Atu0674 +0.5 1.2 hypothetical protein compare
Atu0530 +0.5 2.4 UDP-galactose 4-epimerase compare
Atu0156 +0.5 1.2 hypothetical protein compare
Atu2737 +0.5 1.7 oxidoredutase compare
Atu4080 +0.4 2.3 glutamine amidotransferase compare
Atu3171 +0.4 1.9 sugar ABC transporter ATPase compare
Atu8145 +0.4 1.4 hypothetical protein compare
Atu4023 +0.4 1.5 ferrichrome ABC transporter substrate-binding protein compare
Atu1509 +0.4 2.1 hypothetical protein compare
Atu4359 +0.4 1.2 sugar ABC transporter permease compare
Atu3523 +0.4 1.8 polysaccharide biosynthesis-like protein compare
Atu1476 +0.4 1.5 esterase D compare
Atu0870 +0.4 2.1 trans-aconitate methyltransferase compare
Atu3838 +0.4 1.2 hypothetical protein compare
Atu1042 +0.4 2.4 hypothetical protein compare
Atu1366 +0.4 1.5 hypothetical protein compare
Atu1577 +0.4 1.5 ABC transporter, substrate binding protein (amino acid) compare
Atu0849 +0.4 1.3 hypothetical protein compare
Atu8036 +0.4 0.6 protein YBGT-like protein compare
Atu2671 +0.4 2.3 ABC transporter, membrane spanning protein compare
Atu0348 +0.4 1.5 hypothetical protein compare
Atu2367 +0.4 0.9 hypothetical protein compare
Atu0492 +0.4 1.7 hypothetical protein compare
Atu6137 +0.4 2.3 hypothetical protein compare
Atu2200 +0.4 1.4 cold shock protein compare
Atu1232 +0.4 0.5 hypothetical protein compare
Atu3198 +0.4 1.4 ribose ABC transporter substrate-binding protein compare
Atu1889 +0.4 1.1 diacylglycerol kinase compare
Atu0167 +0.4 0.9 transcriptional regulator, AraC family compare
Atu2272 +0.4 1.4 hypothetical protein compare
Atu0262 +0.4 1.8 acetyltransferase compare
Atu1004 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms