Experiment set12IT059 for Pseudomonas putida KT2440

Compare to:

Phenylacetic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0967 -7.8 -5.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3284 -7.8 -5.4 enoyl-CoA hydratase-isomerase conserved
PP_2001 -7.7 -5.3 O-succinylhomoserine sulfhydrylase compare
PP_3282 -7.6 -5.3 3-hydroxyadipyl-CoA dehydrogenase conserved
PP_0787 -7.4 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1988 -7.4 -7.2 3-isopropylmalate dehydrogenase compare
PP_3285 -7.4 -5.1 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_3276 -7.3 -7.1 ring 1,2-phenylacetyl-CoA epoxidase beta subunit conserved
PP_0966 -7.3 -7.1 Histidinol dehydrogenase compare
PP_4680 -7.2 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3279 -7.2 -9.9 phenylacetate-CoA ligase conserved
PP_5097 -7.0 -9.6 homoserine O-acetyltransferase compare
PP_4678 -7.0 -11.7 Ketol-acid reductoisomerase compare
PP_4679 -7.0 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -6.8 -6.6 methionine biosynthesis protein MetW compare
PP_1231 -6.8 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4890 -6.8 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -6.6 -7.9 Indole-3-glycerol phosphate synthase compare
PP_0292 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3272 -6.5 -16.2 acetate permease compare
PP_1986 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_0420 -6.4 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3283 -6.4 -8.6 1,2-epoxyphenylacetyl-CoA isomerase conserved
PP_1995 -6.4 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3280 -6.4 -6.5 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase conserved
PP_0417 -6.3 -21.1 Anthranilate synthase component 1 compare
PP_3511 -6.3 -9.6 Branched-chain-amino-acid aminotransferase compare
PP_3270 -6.2 -14.4 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase conserved
PP_5185 -6.1 -4.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3277 -6.1 -7.1 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_2168 -6.0 -10.0 Transaldolase compare
PP_3274 -6.0 -11.3 ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit conserved
PP_1088 -6.0 -4.1 Argininosuccinate synthase compare
PP_0290 -5.9 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0965 -5.9 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3278 -5.8 -8.7 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit conserved
PP_4909 -5.7 -8.7 phosphoserine phosphatase compare
PP_1985 -5.7 -7.8 3-isopropylmalate dehydratase large subunit compare
PP_1079 -5.6 -6.7 Ornithine carbamoyltransferase compare
PP_4723 -5.6 -9.3 Carbamoyl-phosphate synthase large chain compare
PP_5015 -5.6 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5128 -5.4 -9.3 Dihydroxy-acid dehydratase compare
PP_2371 -5.4 -9.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1025 -5.3 -14.6 2-isopropylmalate synthase compare
PP_0164 -5.3 -9.5 conserved protein of unknown function compare
PP_0289 -5.3 -9.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -5.2 -5.1 Glutamate 5-kinase compare
PP_4724 -5.1 -7.0 Carbamoyl-phosphate synthase small chain compare
PP_5155 -5.1 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -5.1 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -5.1 -6.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5289 -5.0 -6.0 Acetylglutamate kinase compare
PP_4364 -4.9 -6.6 putative Anti-sigma F factor antagonist compare
PP_0421 -4.8 -7.8 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.8 -4.7 tryptophan synthase beta chain compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_0184 -4.7 -3.2 Argininosuccinate lyase compare
PP_5014 -4.7 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_2370 -4.4 -4.8 conserved protein of unknown function compare
PP_4799 -4.3 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1233 -4.3 -5.8 sulfurtransferase compare
PP_4999 -4.2 -2.9 dihydroorotase-like protein compare
PP_0356 -4.2 -9.2 malate synthase G compare
PP_4699 -3.8 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3273 -3.8 -6.9 conserved protein of unknown function compare
PP_4696 -3.8 -2.6 Nitrogen regulation protein NR(I) compare
PP_3493 -3.8 -7.8 Transcriptional regulator, LysR family compare
PP_5104 -3.7 -8.9 thiazole synthase compare
PP_4058 -3.6 -13.7 1,4-alpha-glucan branching enzyme compare
PP_0406 -3.5 -7.9 Nucleotidyltransferase family protein compare
PP_0735 -3.5 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_2145 -3.4 -6.9 beta-N-acetylglucosaminidase compare
PP_1493 -3.3 -4.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2388 -3.3 -4.4 Transporter, LysE family compare
PP_3494 -3.2 -9.6 conserved exported protein of unknown function compare
PP_3281 -3.2 -5.5 hydroxyphenylacetyl-CoA thioesterase conserved
PP_3790 -3.1 -9.7 diaminopimelate epimerase compare
PP_1355 -3.0 -18.1 Muropeptide permease AmpG compare
PP_2328 -2.9 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_0291 -2.9 -2.9 conserved protein of unknown function compare
PP_2356 -2.9 -12.4 putative Phytochrome family protein compare
PP_0393 -2.9 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0434 -2.9 -11.2 Anhydro-N-acetylmuramic acid kinase compare
PP_0405 -2.8 -16.2 conserved protein of unknown function compare
PP_5303 -2.8 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3662 -2.7 -10.2 conserved protein of unknown function compare
PP_4700 -2.7 -1.9 pantothenate synthetase compare
PP_0435 -2.6 -10.8 Peptidase, M23/M37 family compare
PP_0846 -2.5 -2.4 DnaK-like molecular chaperone specific for IscU compare
PP_2433 -2.5 -3.4 conserved protein of unknown function compare
PP_1764 -2.4 -7.7 Phosphoglycolate phosphatase 2 compare
PP_4782 -2.4 -5.8 Phosphomethylpyrimidine kinase compare
PP_2390 -2.4 -9.0 Transcriptional regulator, LysR family compare
PP_4296 -2.3 -1.7 conserved exported protein of unknown function compare
PP_4922 -2.3 -11.3 Phosphomethylpyrimidine synthase compare
PP_3105 -2.3 -1.7 conserved membrane protein of unknown function compare
PP_4008 -2.2 -8.1 ATP-dependent serine protease compare
PP_1215 -2.2 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4917 -2.1 -4.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4342 -2.1 -3.5 flagellar synthesis regulator, putative ATPase compare
PP_3271 -2.1 -4.4 phenylacetic acid-specific porin compare
PP_2354 -2.0 -9.0 Sensory box histidine kinase/response regulator compare
PP_1589 -2.0 -8.0 uridylyltransferase compare
PP_4136 -2.0 -1.9 Transcriptional regulator, LuxR family compare
PP_5095 -2.0 -2.3 pyrroline-5-carboxylate reductase compare
PP_4121 -2.0 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_3590 -2.0 -6.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2402 -2.0 -2.2 putative Sensor histidine kinase compare
PP_4902 -2.0 -2.7 Oligoribonuclease compare
PP_1216 -1.9 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4993 -1.9 -3.1 Glutathione synthetase compare
PP_1217 -1.9 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0339 -1.9 -5.5 Pyruvate dehydrogenase E1 component compare
PP_1293 -1.7 -2.3 molybdopterin synthase small subunit compare
PP_1198 -1.7 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5717 -1.7 -2.0 conserved protein of unknown function compare
PP_0368 -1.7 -7.1 putative Acyl-CoA dehydrogenase compare
PP_2087 -1.7 -2.7 CmpX protein compare
PP_5035 -1.7 -6.2 Histidine utilization repressor compare
PP_5216 -1.6 -2.2 exopolyphosphatase compare
PP_1654 -1.6 -3.2 cysteine synthase B compare
PP_1664 -1.6 -4.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_4129 -1.6 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4120 -1.6 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_0261 -1.5 -4.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3505 -1.5 -2.6 conserved protein of unknown function compare
PP_1826 -1.5 -2.9 Hydrolase, isochorismatase family compare
PP_2000 -1.5 -1.4 amidophosphoribosyl transferase compare
PP_4122 -1.5 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1994 -1.5 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1733 -1.4 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_3946 -1.4 -1.2 HTH-type transcriptional repressor NicR compare
PP_4116 -1.4 -8.3 isocitrate lyase compare
PP_5393 -1.4 -1.9 putative metal-binding chaperone compare
PP_4880 -1.4 -6.8 exoribonuclease R compare
PP_2336 -1.4 -2.9 aconitate hydratase 1 compare
PP_4124 -1.4 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_0832 -1.3 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3102 -1.3 -4.8 conserved protein of unknown function compare
PP_5085 -1.3 -4.4 malic enzyme B compare
PP_1629 -1.3 -4.0 Protein RecA compare
PP_4734 -1.3 -5.7 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4338 -1.3 -5.9 Chemotaxis histidine kinase CheA compare
PP_5007 -1.3 -2.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4004 -1.3 -2.8 DNA translocase FtsK compare
PP_5310 -1.3 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_1783 -1.2 -0.8 dTDP-glucose pyrophosphorylase compare
PP_1468 -1.2 -1.8 Tyrosine recombinase XerD compare
PP_4340 -1.2 -4.4 response regulator for chemotactic signal transduction compare
PP_0986 -1.2 -5.2 aminomethyltransferase compare
PP_5114 -1.2 -1.4 putative adenine methyltransferase compare
PP_4480 -1.2 -6.1 arginine N-succinyltransferase, subunit alpha compare
PP_0997 -1.2 -6.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_5230 -1.2 -2.6 Tyrosine recombinase XerC compare
PP_0179 -1.2 -6.9 putative efflux transporter compare
PP_1678 -1.2 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4392 -1.2 -5.9 chemotaxis protein methyltransferase compare
PP_1609 -1.2 -1.6 conserved protein of unknown function compare
PP_0593 -1.2 -1.2 putative ribosome-binding factor compare
PP_0988 -1.2 -7.8 glycine dehydrogenase compare
PP_5217 -1.1 -8.0 Polyphosphate kinase compare
PP_1348 -1.1 -4.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2136 -1.1 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0065 -1.1 -2.3 NAD-binding component of TrK potassium transporter compare
PP_1328 -1.1 -2.8 Protein MraZ compare
PP_5028 -1.1 -1.8 proline iminopeptidase compare
PP_0176 -1.1 -7.0 putative efflux transporter compare
PP_0001 -1.1 -1.4 probable chromosome-partitioning protein compare
PP_2903 -1.1 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0833 -1.1 -1.0 queuine tRNA-ribosyltransferase compare
PP_2375 -1.1 -8.1 cobalamin-dependent methionine synthase compare
PP_4515 -1.1 -5.1 Transcriptional regulator, MarR family compare
PP_0178 -1.1 -5.8 putative efflux pump compare
PP_4828 -1.1 -1.2 Precorrin-8X methylmutase compare
PP_1291 -1.1 -5.8 PhoH family protein compare
PP_3649 -1.1 -2.8 Transcriptional regulator, GntR family compare
PP_1303 -1.1 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_0241 -1.1 -2.0 Transporter compare
PP_1021 -1.1 -4.2 DNA-binding transcriptional regulator compare
PP_2718 -1.1 -2.3 arsenic resistance transcriptional regulator compare
PP_2337 -1.1 -1.9 aconitate isomerase compare
PP_4254 -1.1 -2.5 conserved protein of unknown function compare
PP_4131 -1.1 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_4332 -1.1 -3.3 Chemotaxis protein CheW compare
PP_4695 -1.1 -4.8 Sensory box histidine kinase compare
PP_0627 -1.0 -1.8 conserved protein of unknown function compare
PP_1185 -1.0 -2.9 Outer membrane protein H1 compare
PP_0914 -1.0 -6.5 GGDEF domain protein compare
PP_3789 -1.0 -4.5 putative Efflux transporter compare
PP_3603 -1.0 -4.1 Transcriptional regulator, GntR family compare
PP_1387 -1.0 -2.4 Probable HTH-type transcriptional regulator TtgR compare
PP_4895 -1.0 -1.2 tRNA dimethylallyltransferase compare
PP_1716 -1.0 -2.8 Transcriptional regulator, Cro/CI family compare
PP_2302 -1.0 -3.3 DNA-binding, ATP-dependent protease compare
PP_0887 -1.0 -4.0 Sensor histidine kinase compare
PP_4098 -1.0 -2.0 UvrABC system protein C compare
PP_1829 -1.0 -2.9 Hydrolase, alpha/beta fold family compare
PP_0789 -1.0 -4.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4546 -1.0 -2.5 ATP-dependent helicase HrpA compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source Phenylacetic acid in Pseudomonas putida KT2440

For carbon source Phenylacetic acid across organisms