Experiment set12IT059 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1030 -3.8 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0331 -3.8 -5.0 sigma-54 modulation protein compare
Atu0769 -3.3 -3.2 protoheme IX farnesyltransferase compare
Atu1417 -3.3 -9.5 enoyl-CoA hydratase compare
Atu2439 -2.8 -2.3 hypothetical protein compare
Atu0141 -2.8 -2.7 cytochrome O ubiquinol oxidase subunit I compare
Atu4317 -2.8 -3.9 TetR family transcriptional regulator compare
Atu1446 -2.6 -2.5 two component response regulator compare
Atu3707 -2.5 -4.1 phosphoserine aminotransferase compare
Atu3754 -2.3 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0399 -2.3 -7.3 dihydroorotase compare
Atu3908 -2.3 -9.6 GntR family transcriptional regulator compare
Atu0886 -2.1 -2.2 hypothetical protein compare
Atu2684 -2.1 -2.2 hypothetical protein compare
Atu1810 -2.1 -1.7 hypothetical protein compare
Atu0043 -2.1 -2.5 imidazoleglycerol-phosphate dehydratase compare
Atu0163 -2.0 -4.5 tonB protein compare
Atu0162 -2.0 -5.1 biopolymer transport protein compare
Atu3469 -1.9 -3.3 phosphoglyceromutase compare
Atu3598 -1.9 -2.0 thiol:disulfide interchange protein compare
Atu2183 -1.9 -6.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0486 -1.8 -3.3 dihydroorotate dehydrogenase compare
Atu0161 -1.8 -9.2 biopolymer transport protein compare
Atu0184 -1.8 -3.0 glucokinase compare
Atu0026 -1.8 -1.5 hypothetical protein compare
Atu0039 -1.7 -2.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu2289 -1.7 -10.3 anthranilate synthase component I and II compare
Atu1750 -1.7 -3.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0041 -1.7 -2.2 glutamine amidotransferase compare
Atu1588 -1.7 -7.5 homoserine dehydrogenase compare
Atu0031 -1.6 -1.7 PTS system, IIA component compare
Atu4616 -1.6 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu0038 -1.6 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2057 -1.6 -2.4 DNA helicase II compare
Atu1874 -1.6 -2.9 RecA protein compare
Atu3706 -1.5 -5.6 D-3-phosphoglycerate dehydrogenase compare
Atu2554 -1.5 -2.9 lysyl-tRNA synthetase compare
Atu2640 -1.5 -3.7 hypothetical protein compare
Atu0298 -1.5 -4.8 orotidine 5 compare
Atu2125 -1.5 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu3353 -1.5 -9.2 mannose-1-phosphate guanylyltransferase compare
Atu2728 -1.5 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu2036 -1.5 -9.7 acetolactate synthase III, large subunit compare
Atu2207 -1.5 -2.5 two component sensor kinase compare
Atu1163 -1.5 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0400 -1.4 -2.9 orotate phosphoribosyltransferase compare
Atu4217 -1.4 -1.2 TetR family transcriptional regulator compare
Atu2238 -1.4 -6.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1140 -1.4 -2.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2052 -1.3 -4.9 hypothetical protein compare
Atu4614 -1.3 -6.1 glycosyltransferase compare
Atu0029 -1.3 -3.3 S-adenosylhomocysteine hydrolase compare
Atu1845 -1.3 -4.8 phosphoribosylformylglycinamidine synthase I compare
Atu1380 -1.3 -5.0 zinc metallopeptidase compare
Atu1850 -1.3 -3.0 phosphoribosylformylglycinamidine synthetase II compare
Atu3755 -1.3 -3.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu6098 -1.3 -1.1 transcriptional regulator, HTH family compare
Atu0895 -1.3 -2.6 ABC transporter, substrate binding protein compare
Atu0647 -1.3 -4.9 phosphoribosylamine--glycine ligase compare
Atu1307 -1.3 -4.4 dihydroorotase compare
Atu3121 -1.3 -1.3 cold shock protein compare
Atu0971 -1.3 -2.7 two component sensor kinase compare
Atu4166 -1.2 -2.4 UDP-glucose 4-epimerase compare
Atu1141 -1.2 -4.0 Phosphoribosylglycinamide synthetase compare
Atu0977 -1.2 -3.8 serine protease DO-like protease compare
Atu4618 -1.2 -7.4 dTDP-rhamnose-3,5-epimerase compare
Atu3311 -1.2 -8.5 phosphomannose isomerase compare
Atu2073 -1.2 -4.6 membrane protein compare
Atu2832 -1.2 -3.8 tRNA modification GTPase compare
Atu1075 -1.2 -5.3 amidophosphoribosyltransferase compare
Atu1902 -1.2 -4.3 transketolase compare
Atu4773 -1.2 -2.0 two component response regulator compare
Atu1620 -1.2 -7.5 triosephosphate isomerase compare
Atu1535 -1.2 -3.5 cytochrome c oxidase, FixQ chain compare
Atu1513 -1.2 -3.7 ABC excinuclease subunit A compare
Atu0030 -1.2 -1.6 phosphocarrier protein HPr compare
Atu1308 -1.2 -3.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0017 -1.1 -3.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2790 -1.1 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu3730 -1.1 -1.0 hypothetical protein compare
Atu4613 -1.1 -8.4 glycosyltransferase compare
Atu2115 -1.1 -5.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4476 -1.1 -6.3 hypothetical protein compare
Atu4617 -1.1 -7.1 dTDP-D-glucose-4,6-dehydratase compare
Atu1530 -1.1 -6.3 nitrogen fixation protein FixG compare
Atu1447 -1.1 -1.9 two component sensor kinase compare
Atu3688 -1.1 -3.6 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1528 -1.1 -7.8 nitrogen fixation protein FixI compare
Atu0678 -1.1 -2.6 histidyl-tRNA synthetase compare
Atu0784 -1.1 -2.1 hypothetical protein compare
Atu0099 -1.0 -5.5 prephenate dehydratase compare
Atu0432 -1.0 -6.5 O-succinylhomoserine sulfhydrylase compare
Atu2040 -1.0 -4.0 phosphoserine phosphatase compare
Atu0876 -1.0 -2.2 superoxide dismutase compare
Atu1364 -1.0 -4.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1536 -1.0 -3.2 cytochrome C oxidase, FixO chain compare
Atu2718 -1.0 -4.5 homoserine O-succinyltransferase compare
Atu2067 -1.0 -1.1 hypothetical protein compare
Atu1173 -1.0 -6.7 MFS permease compare
Atu4418 -1.0 -4.0 glutaryl-CoA dehydrogenase compare
Atu4615 -1.0 -5.6 glucose-1-phosphate thymidylyltransferase compare
Atu0050 -1.0 -3.4 two component response regulator compare
Atu0153 -1.0 -3.7 transcriptional regulator, Fur family compare
Atu4346 -1.0 -4.0 hypothetical protein compare
Atu3712 -1.0 -1.3 hypothetical protein compare
Atu3008 -1.0 -1.0 hypothetical protein compare
Atu1468 -1.0 -4.2 hypothetical protein compare
Atu0189 -1.0 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0062 -1.0 -4.4 transcriptional regulator, ROK family compare
Atu0893 -1.0 -3.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1149 -0.9 -1.4 adenylate cyclase compare
Atu1537 -0.9 -5.7 cytochrome-c oxidase, FixN chain compare
Atu3740 -0.9 -4.8 fructose bisphosphate aldolase compare
Atu0101 -0.9 -4.0 cytochrome c compare
Atu0659 -0.9 -4.7 NTP pyrophosphohydrolase, MutT family compare
Atu0190 -0.9 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2237 -0.9 -3.6 cytochrome c1 compare
Atu1205 -0.9 -6.5 threonine dehydratase compare
Atu0421 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu1677 -0.9 -2.5 queuine tRNA-ribosyltransferase compare
Atu2184 -0.9 -4.5 transcriptional regulator, AsnC family compare
Atu2578 -0.9 -5.0 cAMP-dependent protein kinase regulatory subunit compare
Atu3691 -0.9 -3.4 iron (III) dicitrate ABC transporter ATPase compare
Atu3885 -0.9 -4.1 inositol monophosphatase compare
Atu4072 -0.9 -1.2 nodulation protein N compare
Atu2831 -0.9 -3.7 glucose inhibited division protein A compare
Atu1359 -0.9 -0.9 dnaK deletion suppressor protein compare
Atu3739 -0.9 -2.2 phosphoglycerate kinase compare
Atu0086 -0.9 -1.0 ribosome-binding factor A compare
Atu0537 -0.8 -3.5 histidinol dehydrogenase compare
Atu5057 -0.8 -1.4 hypothetical protein compare
Atu0973 -0.8 -4.4 cycH protein compare
Atu4610 -0.8 -5.4 sugar nucleotide epimerase/dehydratase compare
Atu0040 -0.8 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4711 -0.8 -3.7 two component sensor kinase compare
Atu2791 -0.8 -3.9 3-isopropylmalate dehydrogenase compare
Atu0434 -0.8 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1529 -0.8 -2.9 nitrogen fixation protein FixH compare
Atu0435 -0.8 -1.8 tRNA-Gly compare
Atu4050 -0.8 -1.9 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2432 -0.8 -1.7 hypothetical protein compare
Atu0149 -0.8 -3.3 enoyl-(acyl-carrier-protein) reductase compare
Atu1570 -0.8 -0.7 hypothetical protein compare
Atu1646 -0.8 -3.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu3689 -0.8 -5.1 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2709 -0.8 -5.5 3-isopropylmalate dehydratase, large subunit compare
Atu0677 -0.8 -2.1 hypothetical protein compare
Atu8167 -0.8 -5.7 putative transmembrane protein compare
Atu0679 -0.8 -3.0 ATP phosphoribosyltransferase compare
Atu3608 -0.8 -2.3 hypothetical protein compare
Atu0976 -0.8 -1.8 cycL protein compare
Atu2113 -0.8 -2.0 N-acetylmuramoyl-L-alanine amidase compare
Atu0107 -0.8 -1.7 hypothetical protein compare
Atu3732 -0.8 -5.1 hemolysin compare
Atu1774 -0.8 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu0269 -0.7 -2.8 exodeoxyribonuclease VII large subunit compare
Atu0025 -0.7 -1.1 hypothetical protein compare
Atu3750 -0.7 -1.9 thiamine-phosphate pyrophosphorylase compare
Atu2442 -0.7 -1.4 hypothetical protein compare
Atu2522 -0.7 -4.9 agrobacterium chromosomal virulence protein B compare
Atu1645 -0.7 -4.3 ABC transporter, substrate binding protein compare
Atu1687 -0.7 -3.3 anthranilate phosphoribosyltransferase compare
Atu2710 -0.7 -4.0 hypothetical protein compare
Atu2615 -0.7 -3.5 hypothetical protein compare
Atu2379 -0.7 -3.6 phosphomannomutase compare
Atu1339 -0.7 -1.9 ribonuclease E compare
Atu2264 -0.7 -4.6 2-isopropylmalate synthase compare
Atu1204 -0.7 -3.0 potassium uptake protein compare
Atu1225 -0.7 -1.4 hypothetical protein compare
Atu4887 -0.7 -3.4 hypothetical protein compare
Atu1644 -0.7 -2.2 hypothetical protein compare
Atu2267 -0.7 -4.5 hypothetical protein compare
Atu1619 -0.7 -1.3 protein-export membrane protein SECG compare
Atu0755 -0.7 -1.4 hypothetical protein compare
Atu1803 -0.7 -3.0 cold shock protein compare
Atu0703 -0.7 -1.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2209 -0.7 -2.5 pyrroline-5-carboxylate reductase compare
Atu8177 -0.7 -1.9 hypothetical protein compare
Atu4671 -0.7 -1.2 response regulator compare
Atu6045 -0.7 -1.3 replication protein C compare
Atu2650 -0.7 -3.9 glycerol-3-phosphate dehydrogenase compare
Atu1527 -0.7 -1.7 nitrogen fixation protein FixS compare
Atu1129 -0.7 -3.8 excinuclease ABC chain C compare
Atu1038 -0.7 -2.7 two component response regulator compare
Atu0354 -0.7 -1.4 ferric uptake regulator compare
Atu1688 -0.7 -2.9 indole-3-glycerol-phosphate synthase compare
Atu4099 -0.7 -4.0 hypothetical protein compare
Atu5123 -0.7 -5.2 acetolactate synthase catalytic subunit compare
Atu0809 -0.7 -1.3 hypothetical protein compare
Atu2026 -0.7 -2.7 exodeoxyribonuclease V compare
Atu0511 -0.6 -3.2 pH adaption potassium efflux system protein compare
Atu3763 -0.6 -0.8 hypothetical protein compare
Atu0507 -0.6 -4.4 potassium efflux system protein compare
Atu1074 -0.6 -4.4 NAD/NADP dependent oxidoreductase compare
Atu3910 -0.6 -2.5 LamB/YcsF family protein compare
Atu1534 -0.6 -3.9 cytochrome-c oxidase, FixP chain compare
Atu0499 -0.6 -3.0 hypothetical protein compare
Atu5468 -0.6 -1.7 hypothetical protein compare
Atu0837 -0.6 -3.7 transcriptional regulator, MarR family compare
Atu1469 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms