Experiment set12IT058 for Pseudomonas putida KT2440

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L-Glutamic acid monopotassium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.3 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5098 -7.2 -5.0 methionine biosynthesis protein MetW compare
PP_4679 -7.0 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -6.7 -9.2 Branched-chain-amino-acid aminotransferase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_5155 -6.4 -7.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0967 -6.4 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -6.4 -10.7 3-isopropylmalate dehydrogenase compare
PP_5097 -6.4 -13.6 homoserine O-acetyltransferase compare
PP_4909 -6.3 -7.5 phosphoserine phosphatase compare
PP_0966 -6.1 -12.5 Histidinol dehydrogenase compare
PP_4678 -6.0 -16.5 Ketol-acid reductoisomerase compare
PP_1995 -5.9 -7.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -5.8 -8.0 Carbamoyl-phosphate synthase large chain compare
PP_5185 -5.8 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -5.7 -7.9 3-isopropylmalate dehydratase large subunit compare
PP_1079 -5.7 -6.7 Ornithine carbamoyltransferase compare
PP_5015 -5.7 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0421 -5.6 -9.9 Anthranilate phosphoribosyltransferase compare
PP_4680 -5.5 -16.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -5.5 -20.8 Anthranilate synthase component 1 compare
PP_5014 -5.5 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0164 -5.4 -9.7 conserved protein of unknown function compare
PP_4724 -5.4 -6.4 Carbamoyl-phosphate synthase small chain compare
PP_2001 -5.3 -11.7 O-succinylhomoserine sulfhydrylase compare
PP_0787 -5.3 -6.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2371 -5.3 -8.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1088 -5.2 -9.4 Argininosuccinate synthase compare
PP_0422 -5.2 -8.0 Indole-3-glycerol phosphate synthase compare
PP_0965 -5.2 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4364 -5.1 -6.6 putative Anti-sigma F factor antagonist compare
PP_2327 -5.1 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0290 -5.0 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -5.0 -5.9 Glutamate 5-kinase compare
PP_0083 -4.9 -4.8 tryptophan synthase beta chain compare
PP_3999 -4.9 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5289 -4.9 -5.8 Acetylglutamate kinase compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_0184 -4.8 -3.3 Argininosuccinate lyase compare
PP_5128 -4.8 -8.2 Dihydroxy-acid dehydratase compare
PP_0292 -4.6 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -4.6 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1025 -4.6 -11.9 2-isopropylmalate synthase compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_1066 -4.4 -5.3 C4-dicarboxylate transport transcriptional regulatory protein conserved
PP_4799 -4.4 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0339 -4.3 -3.0 Pyruvate dehydrogenase E1 component compare
PP_4999 -4.3 -2.9 dihydroorotase-like protein compare
PP_1231 -4.2 -8.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1233 -4.0 -7.3 sulfurtransferase compare
PP_4696 -3.9 -2.7 Nitrogen regulation protein NR(I) compare
PP_1067 -3.7 -14.0 Sensor histidine kinase conserved
PP_0420 -3.6 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3484 -3.5 -6.2 Response regulator receiver protein compare
PP_4892 -3.5 -7.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5104 -3.3 -7.8 thiazole synthase compare
PP_2328 -3.2 -8.8 Phosphoadenosine phosphosulfate reductase compare
PP_4120 -3.1 -4.7 NADH-quinone oxidoreductase subunit B compare
PP_4891 -3.1 -7.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4699 -3.0 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5337 -2.9 -5.8 LysR family transcriptional regulator compare
PP_5303 -2.9 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1071 -2.8 -5.2 glutamate / aspartate ABC transporter - periplasmic binding protein conserved
PP_0137 -2.8 -12.2 glutamate/aspartate-proton DAACS transporter conserved
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_1069 -2.5 -5.5 glutamate / aspartate ABC transporter - permease subunit conserved
PP_4342 -2.5 -4.0 flagellar synthesis regulator, putative ATPase compare
PP_4782 -2.4 -6.6 Phosphomethylpyrimidine kinase compare
PP_5338 -2.4 -2.9 aspartate ammonia-lyase compare
PP_2414 -2.4 -4.5 conserved exported protein of unknown function compare
PP_1733 -2.2 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_2388 -2.2 -5.6 Transporter, LysE family compare
PP_2370 -2.2 -2.8 conserved protein of unknown function compare
PP_5217 -2.2 -13.3 Polyphosphate kinase compare
PP_1068 -2.2 -5.7 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_4922 -2.1 -9.9 Phosphomethylpyrimidine synthase compare
PP_1912 -2.1 -5.8 Phosphate acyltransferase compare
PP_5350 -2.1 -3.1 Transcriptional regulator, RpiR family compare
PP_0291 -2.0 -2.7 conserved protein of unknown function compare
PP_0594 -2.0 -8.8 Transcriptional regulator, TetR family compare
PP_1070 -2.0 -4.7 glutamate / aspartate ABC transporter - permease subunit conserved
PP_4004 -1.9 -3.9 DNA translocase FtsK compare
PP_4129 -1.9 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1493 -1.9 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4121 -1.9 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4130 -1.9 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2337 -1.9 -2.8 aconitate isomerase compare
PP_2336 -1.8 -2.8 aconitate hydratase 1 compare
PP_0846 -1.8 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_0393 -1.8 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2390 -1.8 -7.9 Transcriptional regulator, LysR family compare
PP_1217 -1.7 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1664 -1.7 -5.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4726 -1.7 -3.0 Chaperone protein DnaJ compare
PP_1348 -1.7 -6.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0401 -1.7 -3.1 Ribosomal RNA small subunit methyltransferase A compare
PP_4722 -1.7 -4.2 Transcription elongation factor GreA compare
PP_4804 -1.6 -2.7 RlpA-like lipoprotein compare
PP_4124 -1.6 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_4122 -1.6 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4576 -1.6 -6.4 allophanate hydrolase subunit compare
PP_2903 -1.6 -2.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5346 -1.5 -7.2 pyruvate carboxylase subunit B compare
PP_1994 -1.4 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_4289 -1.4 -7.0 conserved membrane protein of unknown function compare
PP_4131 -1.4 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_1678 -1.4 -3.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4126 -1.4 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_4575 -1.4 -4.1 Urea amidolyase-related protein compare
PP_3790 -1.4 -8.6 diaminopimelate epimerase compare
PP_4695 -1.4 -6.5 Sensory box histidine kinase compare
PP_1672 -1.4 -3.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5347 -1.4 -8.4 pyruvate carboxylase subunit A compare
PP_4829 -1.4 -3.0 putative precorrin-3B synthase compare
PP_4943 -1.4 -2.2 putative Glycosyl transferase compare
PP_0834 -1.4 -1.7 Sec translocation complex subunit YajC compare
PP_4577 -1.4 -4.6 UPF0271 protein PP_4577 compare
PP_4937 -1.4 -3.4 toluene tolerance protein compare
PP_4832 -1.4 -2.5 Precorrin-6x reductase compare
PP_0435 -1.3 -9.3 Peptidase, M23/M37 family compare
PP_4392 -1.3 -6.1 chemotaxis protein methyltransferase compare
PP_4941 -1.3 -6.8 conserved exported protein of unknown function compare
PP_1428 -1.3 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_4338 -1.3 -6.7 Chemotaxis histidine kinase CheA compare
PP_1216 -1.3 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3924 -1.3 -2.4 conserved protein of unknown function compare
PP_4143 -1.3 -4.6 conserved protein of unknown function compare
PP_0937 -1.2 -4.3 endoribonuclease G (RNAse G) compare
PP_0362 -1.2 -8.1 Biotin synthase compare
PP_1972 -1.2 -5.4 aromatic-amino-acid aminotransferase compare
PP_2168 -1.2 -7.4 Transaldolase compare
PP_5114 -1.2 -1.8 putative adenine methyltransferase compare
PP_5055 -1.2 -3.5 Sulfurtransferase compare
PP_3730 -1.2 -2.3 Transcriptional regulatory protein AruR compare
PP_4739 -1.2 -2.9 conserved protein of unknown function compare
PP_4579 -1.2 -5.8 Transcriptional regulator, LysR family compare
PP_1675 -1.2 -6.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3409 -1.1 -2.7 putative Cobalamin biosynthesis protein cobE compare
PP_5230 -1.1 -2.2 Tyrosine recombinase XerC compare
PP_5203 -1.1 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_4008 -1.1 -5.3 ATP-dependent serine protease compare
PP_4942 -1.1 -1.4 conserved protein of unknown function compare
PP_4977 -1.1 -6.3 5,10-methylenetetrahydrofolate reductase compare
PP_2375 -1.1 -6.8 cobalamin-dependent methionine synthase compare
PP_3105 -1.1 -1.5 conserved membrane protein of unknown function compare
PP_4379 -1.1 -4.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1679 -1.1 -3.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0368 -1.1 -5.7 putative Acyl-CoA dehydrogenase compare
PP_t13 -1.1 -1.5 tRNA-Lys compare
PP_0058 -1.1 -9.7 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_3507 -1.1 -6.6 Aerobic cobaltochelatase subunit CobN compare
PP_1734 -1.0 -1.8 Probable septum site-determining protein MinC compare
PP_1208 -1.0 -1.2 conserved protein of unknown function, SlyX family compare
PP_0366 -1.0 -5.4 dethiobiotin synthetase compare
PP_4578 -1.0 -7.1 Major facilitator family transporter compare
PP_2820 -1.0 -1.7 HTH-type transcriptional regulator nfxB compare
PP_4824 -1.0 -3.6 Sensor histidine kinase/response regulator compare
PP_4860 -1.0 -6.7 putative Mannose-6-phosphate isomerase compare
PP_2403 -1.0 -2.1 Chemotaxis protein CheY compare
PP_5348 -1.0 -6.2 Transcriptional regulator, LysR family compare
PP_0185 -1.0 -5.2 Positive alginate biosynthesis regulatory protein compare
PP_4826 -1.0 -3.5 Precorrin-3B C17-methyltransferase compare
PP_4340 -1.0 -2.7 response regulator for chemotactic signal transduction compare
PP_5748 -1.0 -2.2 cytochrome c heme lyase subunit compare
PP_0484 -1.0 -3.5 transporter of an unknown substrate compare
PP_1999 -1.0 -2.1 membrane protein required for colicin V production compare
PP_2720 -0.9 -1.4 conserved protein of unknown function compare
PP_5227 -0.9 -3.8 diaminopimelate decarboxylase compare
PP_5145 -0.9 -8.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1629 -0.9 -3.0 Protein RecA compare
PP_0949 -0.9 -4.6 putative ATP-binding protein UPF0042 compare
PP_1074 -0.9 -1.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0833 -0.9 -1.0 queuine tRNA-ribosyltransferase compare
PP_4917 -0.9 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0984 -0.9 -3.9 conserved membrane protein of unknown function compare
PP_4045 -0.9 -1.1 conserved protein of unknown function compare
PP_0848 -0.9 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3508 -0.9 -2.4 Protein CobW compare
PP_5572 -0.9 -2.8 protein of unknown function compare
PP_0345 -0.9 -4.2 putative Heptose kinase WapP compare
PP_0364 -0.9 -4.2 pimeloyl-[acp] methyl ester esterase compare
PP_1366 -0.9 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_4944 -0.9 -2.4 Carbamoyltransferase compare
PP_5640 -0.9 -1.7 conserved protein of unknown function compare
PP_1676 -0.9 -2.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0735 -0.9 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4471 -0.9 -2.3 Magnesium transporter compare
PP_1677 -0.9 -2.5 Adenosyl-cobyric acid synthase compare
PP_4827 -0.8 -4.8 Precorrin-2 C(20)-methyltransferase compare
PP_0852 -0.8 -2.0 Transcriptional regulator, Cro/CI family compare
PP_3519 -0.8 -1.2 putative Lipoprotein compare
PP_5216 -0.8 -1.4 exopolyphosphatase compare
PP_0356 -0.8 -4.7 malate synthase G compare
PP_5035 -0.8 -3.5 Histidine utilization repressor compare
PP_3821 -0.8 -4.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4332 -0.8 -2.4 Chemotaxis protein CheW compare
PP_3506 -0.8 -1.9 Magnesium chelatase, subunit ChII compare
PP_2299 -0.8 -1.8 Trigger factor compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas putida KT2440

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms