Experiment set12IT057 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.1 -7.0 Indole-3-glycerol phosphate synthase compare
PP_0164 -6.4 -6.3 conserved protein of unknown function compare
PP_4909 -6.3 -7.5 phosphoserine phosphatase compare
PP_4890 -6.2 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5015 -6.1 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5346 -6.0 -12.8 pyruvate carboxylase subunit B compare
PP_5098 -6.0 -9.9 methionine biosynthesis protein MetW compare
PP_0966 -6.0 -13.3 Histidinol dehydrogenase compare
PP_3511 -5.9 -10.5 Branched-chain-amino-acid aminotransferase compare
PP_4680 -5.7 -16.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -5.6 -17.4 Ketol-acid reductoisomerase compare
PP_5097 -5.5 -16.3 homoserine O-acetyltransferase compare
PP_0967 -5.4 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0417 -5.3 -21.0 Anthranilate synthase component 1 compare
PP_1088 -5.3 -9.5 Argininosuccinate synthase compare
PP_1995 -5.3 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2371 -5.2 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -5.2 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -5.2 -12.6 Transaldolase compare
PP_2327 -5.2 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0290 -5.2 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5347 -5.1 -14.3 pyruvate carboxylase subunit A compare
PP_5348 -5.1 -10.4 Transcriptional regulator, LysR family compare
PP_4723 -5.1 -13.1 Carbamoyl-phosphate synthase large chain compare
PP_0965 -5.1 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1986 -5.0 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.0 -10.0 3-isopropylmalate dehydrogenase compare
PP_5014 -5.0 -5.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0787 -5.0 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0083 -5.0 -4.8 tryptophan synthase beta chain compare
PP_0289 -4.9 -9.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -4.9 -8.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1079 -4.9 -8.1 Ornithine carbamoyltransferase compare
PP_1985 -4.7 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_0292 -4.7 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4724 -4.6 -7.7 Carbamoyl-phosphate synthase small chain compare
PP_0082 -4.6 -4.5 tryptophan synthase alpha chain compare
PP_0184 -4.6 -4.5 Argininosuccinate lyase compare
PP_0421 -4.6 -8.3 Anthranilate phosphoribosyltransferase compare
PP_1231 -4.5 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -4.5 -9.6 O-succinylhomoserine sulfhydrylase compare
PP_0420 -4.5 -12.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.4 -3.0 dihydroorotase-like protein compare
PP_0339 -4.3 -4.1 Pyruvate dehydrogenase E1 component compare
PP_5128 -4.0 -7.9 Dihydroxy-acid dehydratase compare
PP_5289 -3.9 -6.0 Acetylglutamate kinase compare
PP_3999 -3.8 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5303 -3.8 -7.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4696 -3.8 -3.7 Nitrogen regulation protein NR(I) compare
PP_1025 -3.7 -11.5 2-isopropylmalate synthase compare
PP_3484 -3.5 -7.0 Response regulator receiver protein compare
PP_4364 -3.4 -5.9 putative Anti-sigma F factor antagonist compare
PP_0691 -3.3 -5.2 Glutamate 5-kinase compare
PP_0393 -3.0 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1233 -3.0 -7.0 sulfurtransferase compare
PP_4129 -2.9 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5155 -2.9 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1216 -2.9 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0001 -2.9 -2.8 probable chromosome-partitioning protein compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_2370 -2.9 -4.4 conserved protein of unknown function compare
PP_5095 -2.8 -2.6 pyrroline-5-carboxylate reductase compare
PP_0362 -2.8 -10.9 Biotin synthase compare
PP_2328 -2.7 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_2388 -2.7 -3.8 Transporter, LysE family compare
PP_4782 -2.7 -4.8 Phosphomethylpyrimidine kinase compare
PP_1022 -2.7 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1362 -2.6 -4.2 pyruvate kinase II compare
PP_0365 -2.4 -9.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4984 -2.4 -10.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5350 -2.3 -3.1 Transcriptional regulator, RpiR family compare
PP_4122 -2.3 -3.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4120 -2.3 -4.9 NADH-quinone oxidoreductase subunit B compare
PP_1215 -2.3 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0366 -2.2 -6.5 dethiobiotin synthetase compare
PP_0363 -2.2 -11.6 8-amino-7-oxononanoate synthase compare
PP_0735 -2.2 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0364 -2.1 -7.9 pimeloyl-[acp] methyl ester esterase compare
PP_1629 -2.1 -5.3 Protein RecA compare
PP_4004 -2.0 -4.0 DNA translocase FtsK compare
PP_2390 -2.0 -8.1 Transcriptional regulator, LysR family compare
PP_4126 -2.0 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_5104 -1.8 -7.8 thiazole synthase compare
PP_4136 -1.8 -1.9 Transcriptional regulator, LuxR family compare
PP_4943 -1.8 -2.7 putative Glycosyl transferase compare
PP_1912 -1.8 -5.6 Phosphate acyltransferase compare
PP_0291 -1.7 -2.3 conserved protein of unknown function compare
PP_4121 -1.6 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PP_1493 -1.6 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4699 -1.6 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2414 -1.6 -2.9 conserved exported protein of unknown function compare
PP_1348 -1.6 -6.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4124 -1.5 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_3637 -1.5 -1.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5310 -1.5 -5.0 junction-specific ATP-dependent DNA helicase compare
PP_1783 -1.4 -0.9 dTDP-glucose pyrophosphorylase compare
PP_4922 -1.4 -9.5 Phosphomethylpyrimidine synthase compare
PP_5217 -1.4 -9.4 Polyphosphate kinase compare
PP_2402 -1.3 -2.7 putative Sensor histidine kinase compare
PP_1426 -1.3 -9.0 L-aspartate oxidase compare
PP_2510 -1.3 -2.8 conserved protein of unknown function compare
PP_0833 -1.3 -1.2 queuine tRNA-ribosyltransferase compare
PP_3790 -1.2 -6.8 diaminopimelate epimerase compare
PP_5230 -1.2 -2.4 Tyrosine recombinase XerC compare
PP_0435 -1.2 -7.8 Peptidase, M23/M37 family compare
PP_2475 -1.2 -3.9 Transcriptional regulator, TetR family compare
PP_2737 -1.2 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3821 -1.2 -6.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2433 -1.2 -1.6 conserved protein of unknown function compare
PP_1664 -1.2 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_2378 -1.2 -1.9 Fe/S biogenesis protein NfuA compare
PP_2302 -1.2 -3.9 DNA-binding, ATP-dependent protease compare
PP_5644 -1.2 -2.3 conserved membrane protein of unknown function compare
PP_4828 -1.2 -1.3 Precorrin-8X methylmutase compare
PP_4131 -1.2 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_2087 -1.2 -2.4 CmpX protein compare
PP_1366 -1.1 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_1734 -1.1 -2.1 Probable septum site-determining protein MinC compare
PP_0406 -1.1 -3.9 Nucleotidyltransferase family protein compare
PP_2568 -1.1 -1.4 Ring-cleaving dioxygenase compare
PP_2000 -1.1 -1.6 amidophosphoribosyl transferase compare
PP_3417 -1.1 -4.5 D-gluconate transporter compare
PP_1011 -1.1 -5.7 glucokinase compare
PP_3102 -1.1 -3.5 conserved protein of unknown function compare
PP_5352 -1.1 -6.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0834 -1.1 -2.3 Sec translocation complex subunit YajC compare
PP_2145 -1.1 -4.8 beta-N-acetylglucosaminidase compare
PP_1994 -1.0 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_1654 -1.0 -2.5 cysteine synthase B compare
PP_1016 -1.0 -5.7 mannose/glucose ABC transporter, permease protein conserved
PP_1198 -1.0 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1826 -1.0 -1.8 Hydrolase, isochorismatase family compare
PP_1733 -1.0 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_0122 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4130 -1.0 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2307 -1.0 -2.9 conserved protein of unknown function compare
PP_4340 -1.0 -2.3 response regulator for chemotactic signal transduction compare
PP_5274 -0.9 -2.6 conserved protein of unknown function compare
PP_1018 -0.9 -5.0 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_5430 -0.9 -2.4 protein of unknown function compare
PP_3946 -0.9 -1.1 HTH-type transcriptional repressor NicR compare
PP_4338 -0.9 -4.4 Chemotaxis histidine kinase CheA compare
PP_0274 -0.9 -2.1 putative transcriptional regulator containing HTH domain compare
PP_4829 -0.9 -2.9 putative precorrin-3B synthase compare
PP_4695 -0.9 -5.0 Sensory box histidine kinase compare
PP_4392 -0.9 -4.7 chemotaxis protein methyltransferase compare
PP_5589 -0.9 -2.4 protein of unknown function containing Rhs repeat-associated core domain compare
PP_5203 -0.9 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_3508 -0.9 -2.2 Protein CobW compare
PP_1355 -0.9 -7.3 Muropeptide permease AmpG compare
PP_1764 -0.9 -3.6 Phosphoglycolate phosphatase 2 compare
PP_5216 -0.9 -1.5 exopolyphosphatase compare
PP_1346 -0.8 -3.4 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4332 -0.8 -3.1 Chemotaxis protein CheW compare
PP_1217 -0.8 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0513 -0.8 -2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0356 -0.8 -4.1 malate synthase G compare
PP_1560 -0.8 -2.5 conserved protein of unknown function compare
PP_4880 -0.8 -4.5 exoribonuclease R compare
PP_2429 -0.8 -1.5 putative Membrane protein compare
PP_1304 -0.8 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1681 -0.8 -4.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0801 -0.8 -1.2 conserved exported protein of unknown function compare
PP_3248 -0.8 -1.3 Dyp-type peroxidase family protein compare
PP_3409 -0.8 -2.1 putative Cobalamin biosynthesis protein cobE compare
PP_4895 -0.8 -1.2 tRNA dimethylallyltransferase compare
PP_1381 -0.8 -1.1 4-carboxymuconolactone decarboxylase compare
PP_1185 -0.8 -2.4 Outer membrane protein H1 compare
PP_0593 -0.8 -1.0 putative ribosome-binding factor compare
PP_5546 -0.8 -2.0 conserved protein of unknown function compare
PP_1009 -0.8 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0405 -0.7 -6.3 conserved protein of unknown function compare
PP_1589 -0.7 -4.2 uridylyltransferase compare
PP_1812 -0.7 -2.1 conserved protein of unknown function compare
PP_2416 -0.7 -2.1 putative Iron ABC transporter, ATP-binding protein compare
PP_0378 -0.7 -4.5 Pyrroloquinoline-quinone synthase compare
PP_4738 -0.7 -2.3 conserved exported protein of unknown function compare
PP_2044 -0.7 -0.7 conserved inner membrane protein of unknown function compare
PP_0381 -0.7 -3.3 Coenzyme PQQ synthesis protein F compare
PP_5706 -0.7 -0.9 Sec translocation complex - SecG subunit compare
PP_3840 -0.7 -1.4 conserved protein of unknown function compare
PP_0547 -0.7 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1015 -0.7 -4.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1864 -0.7 -2.0 conserved protein of unknown function compare
PP_1271 -0.7 -3.0 putative Multidrug efflux MFS transporter compare
PP_1676 -0.7 -2.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4964 -0.7 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4591 -0.7 -2.4 Ribonuclease D compare
PP_3866 -0.7 -2.3 conserved protein of unknown function compare
PP_0846 -0.7 -0.7 DnaK-like molecular chaperone specific for IscU compare
PP_3903 -0.7 -0.9 conserved protein of unknown function compare
PP_1303 -0.6 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_3359 -0.6 -2.2 putative Hydroxycinnamic acid degradation regulator compare
PP_3460 -0.6 -2.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_0434 -0.6 -4.2 Anhydro-N-acetylmuramic acid kinase compare
PP_1017 -0.6 -3.5 mannose/glucose ABC transporter, permease protein conserved
PP_5008 -0.6 -1.0 Poly granule-associated protein compare
PP_1008 -0.6 -1.3 RNA polymerase subunit sigma-24 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms