Experiment set12IT056 for Pseudomonas putida KT2440

Compare to:

Ferulic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -7.7 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_1377 -7.7 -5.3 beta-ketoadipyl-CoA thiolase conserved
PP_4678 -7.5 -7.3 Ketol-acid reductoisomerase compare
PP_0966 -7.2 -8.5 Histidinol dehydrogenase compare
PP_3951 -7.1 -6.9 3-oxoadipate CoA-transferase subunit A compare
PP_0422 -7.1 -6.9 Indole-3-glycerol phosphate synthase compare
PP_3511 -7.1 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_3952 -7.0 -9.6 3-oxoadipate CoA-transferase subunit A conserved
PP_5098 -6.8 -6.7 methionine biosynthesis protein MetW compare
PP_5097 -6.7 -12.1 homoserine O-acetyltransferase compare
PP_1988 -6.6 -10.2 3-isopropylmalate dehydrogenase compare
PP_0420 -6.6 -12.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0292 -6.6 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -6.6 -13.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -6.6 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1995 -6.5 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -6.4 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -6.4 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0290 -6.3 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -6.3 -7.4 phosphoserine phosphatase compare
PP_3736 -6.2 -13.2 vanillate O-demethylase oxygenase subunit conserved
PP_4656 -6.1 -11.1 protocatechuate 3,4-dioxygenase beta chain compare
PP_1379 -6.1 -9.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_0164 -6.1 -7.2 conserved protein of unknown function compare
PP_0417 -5.9 -20.7 Anthranilate synthase component 1 compare
PP_1079 -5.8 -6.9 Ornithine carbamoyltransferase compare
PP_2371 -5.8 -8.9 Sulphite reductase hemoprotein, beta subunit compare
PP_4723 -5.7 -9.5 Carbamoyl-phosphate synthase large chain compare
PP_1088 -5.7 -7.8 Argininosuccinate synthase compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -5.6 -6.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -5.6 -8.8 Dihydroxy-acid dehydratase compare
PP_5014 -5.5 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -5.3 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1381 -5.3 -2.2 4-carboxymuconolactone decarboxylase compare
PP_5155 -5.3 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -5.3 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2168 -5.3 -12.2 Transaldolase compare
PP_3999 -5.3 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1375 -5.1 -15.4 transcription regulatory protein (pca regulon) compare
PP_0421 -5.1 -8.3 Anthranilate phosphoribosyltransferase compare
PP_4655 -5.0 -12.0 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_0691 -5.0 -5.9 Glutamate 5-kinase compare
PP_0083 -4.9 -4.8 tryptophan synthase beta chain compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_2388 -4.8 -6.2 Transporter, LysE family compare
PP_2001 -4.6 -10.7 O-succinylhomoserine sulfhydrylase compare
PP_4724 -4.6 -7.9 Carbamoyl-phosphate synthase small chain compare
PP_0787 -4.6 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1380 -4.5 -6.3 3-oxoadipate enol-lactonase 2 conserved
PP_5015 -4.5 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1616 -4.5 -12.3 formaldehyde dehydrogenase, glutathione-dependent conserved
PP_2327 -4.5 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4799 -4.4 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5095 -4.3 -3.0 pyrroline-5-carboxylate reductase compare
PP_0184 -4.3 -5.1 Argininosuccinate lyase compare
PP_0356 -4.2 -9.0 malate synthase G compare
PP_0289 -4.2 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_3737 -4.2 -10.6 vanillate O-demethylase oxidoreductase conserved
PP_3356 -4.1 -15.3 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_5289 -4.0 -5.0 Acetylglutamate kinase compare
PP_4696 -3.9 -2.7 Nitrogen regulation protein NR(I) compare
PP_1025 -3.8 -10.3 2-isopropylmalate synthase compare
PP_1826 -3.8 -3.8 Hydrolase, isochorismatase family compare
PP_1713 -3.7 -3.4 Transcriptional regulator PcaQ compare
PP_4782 -3.7 -7.8 Phosphomethylpyrimidine kinase compare
PP_4902 -3.6 -2.5 Oligoribonuclease compare
PP_2328 -3.5 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_2145 -3.5 -7.4 beta-N-acetylglucosaminidase compare
PP_4004 -3.3 -4.0 DNA translocase FtsK compare
PP_4999 -3.3 -3.2 dihydroorotase-like protein compare
PP_0291 -3.3 -3.2 conserved protein of unknown function compare
PP_1233 -3.2 -5.4 sulfurtransferase compare
PP_0406 -3.2 -8.6 Nucleotidyltransferase family protein compare
PP_2390 -3.1 -10.3 Transcriptional regulator, LysR family compare
PP_2370 -3.1 -2.7 conserved protein of unknown function compare
PP_5104 -3.0 -8.7 thiazole synthase compare
PP_1355 -2.9 -16.5 Muropeptide permease AmpG compare
PP_0393 -2.9 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1216 -2.9 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4124 -2.9 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_3590 -2.8 -7.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4364 -2.8 -3.6 putative Anti-sigma F factor antagonist compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_4993 -2.7 -3.2 Glutathione synthetase compare
PP_4122 -2.7 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4131 -2.7 -7.2 NADH-quinone oxidoreductase subunit N compare
PP_0888 -2.7 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_0405 -2.6 -16.6 conserved protein of unknown function compare
PP_5303 -2.6 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3357 -2.5 -5.6 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_3358 -2.5 -5.5 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_0434 -2.4 -11.4 Anhydro-N-acetylmuramic acid kinase compare
PP_1654 -2.4 -3.7 cysteine synthase B compare
PP_0735 -2.3 -2.4 molybdopterin-synthase adenylyltransferase compare
PP_1615 -2.3 -9.4 Transcriptional regulator, LysR family conserved
PP_4699 -2.3 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1733 -2.3 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4120 -2.3 -5.0 NADH-quinone oxidoreductase subunit B compare
PP_1764 -2.3 -5.8 Phosphoglycolate phosphatase 2 compare
PP_4910 -2.3 -2.7 conserved protein of unknown function compare
PP_2356 -2.2 -9.5 putative Phytochrome family protein compare
PP_0435 -2.2 -10.9 Peptidase, M23/M37 family compare
PP_4129 -2.2 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1215 -2.2 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4695 -2.2 -8.5 Sensory box histidine kinase compare
PP_2337 -2.1 -2.8 aconitate isomerase compare
PP_0117 -2.1 -7.4 Zn(2+) ABC transporter - permease subunit compare
PP_1493 -2.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2402 -2.1 -3.1 putative Sensor histidine kinase compare
PP_4922 -2.0 -10.4 Phosphomethylpyrimidine synthase compare
PP_3484 -1.9 -5.4 Response regulator receiver protein compare
PP_3903 -1.9 -2.2 conserved protein of unknown function compare
PP_0914 -1.8 -10.4 GGDEF domain protein compare
PP_0339 -1.8 -5.6 Pyruvate dehydrogenase E1 component compare
PP_1366 -1.7 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1468 -1.7 -2.4 Tyrosine recombinase XerD compare
PP_3248 -1.7 -1.9 Dyp-type peroxidase family protein compare
PP_2336 -1.7 -2.9 aconitate hydratase 1 compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_2378 -1.7 -2.6 Fe/S biogenesis protein NfuA compare
PP_2433 -1.6 -3.0 conserved protein of unknown function compare
PP_5035 -1.6 -7.2 Histidine utilization repressor compare
PP_4546 -1.6 -3.5 ATP-dependent helicase HrpA compare
PP_0120 -1.6 -5.8 putative zinc ABC transporter compare
PP_4058 -1.6 -9.0 1,4-alpha-glucan branching enzyme compare
PP_1348 -1.6 -6.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4121 -1.5 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0673 -1.5 -3.6 conserved protein of unknown function compare
PP_2354 -1.5 -9.1 Sensory box histidine kinase/response regulator compare
PP_0986 -1.5 -4.9 aminomethyltransferase compare
PP_2820 -1.5 -3.5 HTH-type transcriptional regulator nfxB compare
PP_3946 -1.5 -1.2 HTH-type transcriptional repressor NicR compare
PP_0119 -1.5 -3.9 putative zinc uptake regulation protein ZUR compare
PP_5198 -1.4 -2.5 conserved protein of unknown function compare
PP_4130 -1.4 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5217 -1.4 -9.4 Polyphosphate kinase compare
PP_2136 -1.4 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1378 -1.3 -4.1 alpha-ketoglutarate permease compare
PP_1734 -1.3 -2.1 Probable septum site-determining protein MinC compare
PP_3662 -1.3 -5.1 conserved protein of unknown function compare
PP_5028 -1.3 -1.9 proline iminopeptidase compare
PP_1994 -1.3 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_3409 -1.3 -3.1 putative Cobalamin biosynthesis protein cobE compare
PP_3603 -1.2 -4.3 Transcriptional regulator, GntR family compare
PP_1367 -1.2 -4.2 formyltetrahydrofolate hydrolase compare
PP_3821 -1.2 -4.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0880 -1.2 -4.2 dipeptide ABC transporter - putative membrane subunit compare
PP_0997 -1.2 -6.2 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_0789 -1.2 -5.2 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2032 -1.2 -3.7 putative ATPase compare
PP_3105 -1.1 -2.3 conserved membrane protein of unknown function compare
PP_1237 -1.1 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4480 -1.1 -6.7 arginine N-succinyltransferase, subunit alpha compare
PP_5054 -1.1 -1.9 glutaredoxin 3 compare
PP_1292 -1.1 -4.5 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_4880 -1.1 -5.8 exoribonuclease R compare
PP_4917 -1.1 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4961 -1.1 -1.6 putative Lipoprotein compare
PP_1074 -1.1 -2.9 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0118 -1.1 -5.7 zinc import ATP-binding protein compare
PP_1268 -1.1 -2.4 putative HtrA suppressor protein sohA compare
PP_2137 -1.0 -1.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4375 -1.0 -5.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_5352 -1.0 -5.8 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0988 -1.0 -6.4 glycine dehydrogenase compare
PP_1609 -1.0 -2.6 conserved protein of unknown function compare
PP_0368 -1.0 -5.0 putative Acyl-CoA dehydrogenase compare
PP_1589 -1.0 -5.3 uridylyltransferase compare
PP_0065 -1.0 -2.1 NAD-binding component of TrK potassium transporter compare
PP_4008 -1.0 -5.1 ATP-dependent serine protease compare
PP_4332 -1.0 -3.8 Chemotaxis protein CheW compare
PP_2123 -1.0 -5.2 molybdenum::molybdopterin ligase compare
PP_1783 -1.0 -0.9 dTDP-glucose pyrophosphorylase compare
PP_0612 -1.0 -5.7 FAD-dependent glycine/D-amino acid oxidase compare
PP_2976 -1.0 -1.9 putative transposase compare
PP_2908 -1.0 -3.5 DNA-binding transcriptional repressor compare
PP_1186 -1.0 -0.6 two component system DNA-binding transcriptional dual regulator compare
PP_5001 -0.9 -1.5 protease HslVU, ATPase component compare
PP_1294 -0.9 -2.4 molybdopterin synthase large subunit compare
PP_1304 -0.9 -5.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1716 -0.9 -1.7 Transcriptional regulator, Cro/CI family compare
PP_4358 -0.9 -5.1 flagellar synthesis, switching and energizing component compare
PP_4385 -0.9 -5.0 flagellar basal-body rod protein FlgG compare
PP_5230 -0.9 -2.2 Tyrosine recombinase XerC compare
PP_3649 -0.9 -3.1 Transcriptional regulator, GntR family compare
PP_3411 -0.9 -1.8 conserved protein of unknown function compare
PP_4943 -0.9 -1.8 putative Glycosyl transferase compare
PP_1757 -0.9 -3.5 DNA-binding transcriptional dual regulator compare
PP_2302 -0.9 -3.0 DNA-binding, ATP-dependent protease compare
PP_4370 -0.9 -3.3 Flagellar hook-basal body complex protein FliE compare
PP_2414 -0.9 -0.8 conserved exported protein of unknown function compare
PP_1426 -0.9 -6.0 L-aspartate oxidase compare
PP_5225 -0.9 -1.0 frataxin compare
PP_4337 -0.9 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1309 -0.9 -4.5 conserved exported protein of unknown function compare
PP_4396 -0.9 -1.9 conserved protein of unknown function compare
PP_1617 -0.9 -4.7 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_2122 -0.9 -3.0 molybdenum cofactor biosynthesis protein B compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source Ferulic Acid in Pseudomonas putida KT2440

For carbon source Ferulic Acid across organisms