Experiment set12IT056 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.3 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -5.0 -1.5 dnaK deletion suppressor protein compare
Atu0041 -5.0 -2.9 glutamine amidotransferase compare
Atu0039 -4.7 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu1417 -4.4 -7.0 enoyl-CoA hydratase compare
Atu4217 -4.2 -2.1 TetR family transcriptional regulator compare
Atu3707 -3.8 -4.4 phosphoserine aminotransferase compare
Atu0043 -3.8 -4.3 imidazoleglycerol-phosphate dehydratase compare
Atu0678 -3.7 -6.4 histidyl-tRNA synthetase compare
Atu2684 -3.7 -2.6 hypothetical protein compare
Atu0099 -3.6 -12.9 prephenate dehydratase compare
Atu1588 -3.6 -9.9 homoserine dehydrogenase compare
Atu4616 -3.6 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu3763 -3.2 -1.9 hypothetical protein compare
Atu3908 -3.1 -10.1 GntR family transcriptional regulator compare
Atu0399 -3.1 -7.5 dihydroorotase compare
Atu2036 -3.0 -12.5 acetolactate synthase III, large subunit compare
Atu3706 -3.0 -9.7 D-3-phosphoglycerate dehydrogenase compare
Atu2040 -3.0 -6.6 phosphoserine phosphatase compare
Atu0679 -2.9 -6.4 ATP phosphoribosyltransferase compare
Atu2728 -2.9 -4.5 beta (1-->2) glucan export ATP-binding protein compare
Atu2289 -2.9 -13.9 anthranilate synthase component I and II compare
Atu2791 -2.8 -7.4 3-isopropylmalate dehydrogenase compare
Atu2718 -2.6 -7.8 homoserine O-succinyltransferase compare
Atu2790 -2.6 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu0769 -2.6 -2.3 protoheme IX farnesyltransferase compare
Atu0017 -2.5 -3.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3754 -2.5 -7.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1688 -2.5 -7.1 indole-3-glycerol-phosphate synthase compare
Atu0486 -2.5 -4.5 dihydroorotate dehydrogenase compare
Atu0361 -2.5 -4.0 transcriptional regulator compare
Atu4317 -2.4 -3.5 TetR family transcriptional regulator compare
Atu1874 -2.4 -3.9 RecA protein compare
Atu0894 -2.4 -3.1 ABC transporter, membrane spanning protein compare
Atu1750 -2.4 -7.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu4711 -2.3 -10.2 two component sensor kinase compare
Atu2264 -2.3 -11.6 2-isopropylmalate synthase compare
Atu2709 -2.3 -14.7 3-isopropylmalate dehydratase, large subunit compare
Atu0647 -2.3 -7.8 phosphoribosylamine--glycine ligase compare
Atu0971 -2.3 -4.0 two component sensor kinase compare
Atu0298 -2.3 -6.3 orotidine 5 compare
Atu0040 -2.3 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1687 -2.2 -7.2 anthranilate phosphoribosyltransferase compare
Atu2207 -2.2 -4.4 two component sensor kinase compare
Atu1075 -2.2 -7.5 amidophosphoribosyltransferase compare
Atu1810 -2.2 -1.3 hypothetical protein compare
Atu0537 -2.2 -4.5 histidinol dehydrogenase compare
Atu0331 -2.1 -1.8 sigma-54 modulation protein compare
Atu1205 -2.1 -11.8 threonine dehydratase compare
Atu1845 -2.1 -4.8 phosphoribosylformylglycinamidine synthase I compare
Atu0030 -2.1 -1.6 phosphocarrier protein HPr compare
Atu2057 -2.1 -2.9 DNA helicase II compare
Atu1307 -2.1 -6.1 dihydroorotase compare
Atu0977 -2.1 -4.7 serine protease DO-like protease compare
Atu2183 -2.1 -7.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3008 -2.1 -1.0 hypothetical protein compare
Atu4614 -2.0 -6.0 glycosyltransferase compare
Atu3598 -2.0 -1.8 thiol:disulfide interchange protein compare
Atu4618 -2.0 -10.9 dTDP-rhamnose-3,5-epimerase compare
Atu0062 -2.0 -8.6 transcriptional regulator, ROK family compare
Atu0026 -2.0 -1.1 hypothetical protein compare
Atu1364 -1.9 -4.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3353 -1.9 -10.8 mannose-1-phosphate guanylyltransferase compare
Atu4773 -1.9 -1.7 two component response regulator compare
Atu1141 -1.9 -5.6 Phosphoribosylglycinamide synthetase compare
Atu1140 -1.9 -4.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu6098 -1.9 -1.1 transcriptional regulator, HTH family compare
Atu1308 -1.9 -5.9 aspartate carbamoyl transferase catalytic subunit compare
Atu3469 -1.8 -2.7 phosphoglyceromutase compare
Atu0400 -1.8 -4.0 orotate phosphoribosyltransferase compare
Atu2640 -1.8 -4.0 hypothetical protein compare
Atu0038 -1.8 -4.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0895 -1.8 -3.6 ABC transporter, substrate binding protein compare
Atu0703 -1.8 -3.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1850 -1.8 -3.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0086 -1.7 -1.4 ribosome-binding factor A compare
Atu2073 -1.7 -4.8 membrane protein compare
Atu0188 -1.7 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2832 -1.7 -5.2 tRNA modification GTPase compare
Atu0115 -1.6 -1.1 hypothetical protein compare
Atu2052 -1.6 -5.3 hypothetical protein compare
Atu1620 -1.6 -9.4 triosephosphate isomerase compare
Atu0031 -1.6 -1.2 PTS system, IIA component compare
Atu2368 -1.6 -1.6 hypothetical protein compare
Atu1902 -1.6 -4.2 transketolase compare
Atu2555 -1.6 -2.6 L-lysine 2,3-aminomutase compare
Atu3755 -1.5 -4.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4166 -1.5 -2.1 UDP-glucose 4-epimerase compare
Atu0432 -1.5 -4.9 O-succinylhomoserine sulfhydrylase compare
Atu4613 -1.5 -6.9 glycosyltransferase compare
Atu0876 -1.5 -2.1 superoxide dismutase compare
Atu3311 -1.5 -10.6 phosphomannose isomerase compare
Atu1705 -1.5 -5.3 SEC-independent protein translocase protein compare
Atu1844 -1.5 -2.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0269 -1.5 -4.5 exodeoxyribonuclease VII large subunit compare
Atu2522 -1.4 -9.3 agrobacterium chromosomal virulence protein B compare
Atu5142 -1.4 -1.8 hypothetical protein compare
Atu1580 -1.4 -8.6 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu1110 -1.4 -2.9 cytosol aminopeptidase compare
Atu1838 -1.3 -3.2 ABC transporter, substrate binding protein (amino acid) compare
Atu0029 -1.3 -4.7 S-adenosylhomocysteine hydrolase compare
Atu0190 -1.3 -6.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1646 -1.3 -5.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu4615 -1.3 -6.1 glucose-1-phosphate thymidylyltransferase compare
Atu1647 -1.3 -6.3 ABC transporter, membrane spanning protein compare
Atu1062 -1.3 -1.6 phosphatidylserine synthase compare
Atu2650 -1.2 -7.9 glycerol-3-phosphate dehydrogenase compare
Atu4617 -1.2 -4.2 dTDP-D-glucose-4,6-dehydratase compare
Atu1904 -1.2 -1.9 transcriptional regulator compare
Atu1446 -1.2 -1.7 two component response regulator compare
Atu1513 -1.2 -3.8 ABC excinuclease subunit A compare
Atu2662 -1.2 -1.2 acetyltransferase compare
Atu2067 -1.2 -0.9 hypothetical protein compare
Atu2442 -1.2 -2.0 hypothetical protein compare
Atu1644 -1.1 -2.2 hypothetical protein compare
Atu0976 -1.1 -2.7 cycL protein compare
Atu2376 -1.1 -1.3 hypothetical protein compare
Atu5125 -1.1 -3.6 GntR family transcriptional regulator compare
Atu0346 -1.1 -2.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1677 -1.1 -1.9 queuine tRNA-ribosyltransferase compare
Atu3740 -1.1 -5.7 fructose bisphosphate aldolase compare
Atu0101 -1.1 -2.5 cytochrome c compare
Atu0912 -1.1 -1.0 Na+/H+ antiporter compare
Atu2787 -1.1 -0.8 hypothetical protein compare
Atu2824 -1.1 -3.5 hypothetical protein compare
Atu2439 -1.1 -0.9 hypothetical protein compare
Atu4072 -1.0 -1.2 nodulation protein N compare
Atu0836 -1.0 -1.6 Glutathione-S-transferase compare
Atu3727 -1.0 -3.1 hypothetical protein compare
Atu3775 -1.0 -1.6 hypothetical protein compare
Atu3009 -1.0 -0.9 exopolysaccharide production protein compare
Atu1629 -1.0 -1.0 transcriptional regulator, ArsR family compare
Atu2379 -1.0 -5.0 phosphomannomutase compare
Atu0093 -1.0 -2.6 Recombination protein compare
Atu0434 -1.0 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1645 -1.0 -3.8 ABC transporter, substrate binding protein compare
Atu3732 -1.0 -4.6 hemolysin compare
Atu6114 -1.0 -1.5 hypothetical protein compare
Atu4610 -1.0 -6.3 sugar nucleotide epimerase/dehydratase compare
Atu3461 -1.0 -2.1 GntR family transcriptional regulator compare
Atu3485 -1.0 -6.2 short chain dehydrogenase compare
Atu0659 -1.0 -2.9 NTP pyrophosphohydrolase, MutT family compare
Atu3885 -1.0 -5.3 inositol monophosphatase compare
Atu0824 -1.0 -1.0 hypothetical protein compare
Atu2799 -1.0 -3.4 precorrin-6x reductase compare
Atu2798 -1.0 -3.8 precorrin-6y methyltransferase compare
Atu1891 -1.0 -2.7 cobalamin biosynthesis protein compare
Atu0050 -0.9 -2.8 two component response regulator compare
Atu1683 -0.9 -1.2 hypothetical protein compare
Atu1447 -0.9 -2.4 two component sensor kinase compare
Atu3750 -0.9 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu1536 -0.9 -4.3 cytochrome C oxidase, FixO chain compare
Atu4050 -0.9 -1.6 UTP-glucose-1-phosphate uridylyltransferase compare
Atu3219 -0.9 -6.0 dihydroxy-acid dehydratase compare
Atu2617 -0.9 -1.7 chemotaxis protein compare
Atu2831 -0.9 -2.4 glucose inhibited division protein A compare
Atu0544 -0.9 -1.6 hypothetical protein compare
Atu0660 -0.9 -4.1 hydrolase compare
Atu0025 -0.9 -1.4 hypothetical protein compare
Atu1495 -0.9 -1.9 hypothetical protein compare
Atu4609 -0.9 -5.9 glycosyltransferase compare
Atu1619 -0.9 -1.5 protein-export membrane protein SECG compare
Atu2113 -0.9 -2.2 N-acetylmuramoyl-L-alanine amidase compare
Atu0073 -0.9 -3.8 recF-like protein compare
Atu8167 -0.9 -5.4 putative transmembrane protein compare
Atu0893 -0.9 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0205 -0.9 -4.9 methylmalonate-semialdehyde dehydrogenase compare
Atu0784 -0.9 -2.3 hypothetical protein compare
Atu1028 -0.9 -1.4 hypothetical protein compare
Atu4446 -0.9 -5.4 hypothetical protein compare
Atu4139 -0.9 -1.4 hypothetical protein compare
Atu8087 -0.8 -0.8 putative peptidoglycan binding protein compare
Atu2616 -0.8 -3.4 hypothetical protein compare
Atu0153 -0.8 -2.4 transcriptional regulator, Fur family compare
Atu4685 -0.8 -4.2 LacI family transcriptional regulator compare
Atu2796 -0.8 -4.1 precorrin-4 C11-methyltransferase compare
Atu4364 -0.8 -2.9 LacI family transcriptional regulator compare
Atu3249 -0.8 -3.4 septum formation inhibitor compare
Atu0723 -0.8 -0.9 FAD dependent oxidoreductase compare
Atu2805 -0.8 -3.7 cobalamin synthesis protein compare
Atu0401 -0.8 -2.0 fructokinase compare
Atu2238 -0.8 -4.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0837 -0.8 -2.7 transcriptional regulator, MarR family compare
Atu2155 -0.8 -5.9 methionine synthase compare
Atu3572 -0.8 -5.2 transcriptional regulator compare
Atu4792 -0.8 -1.4 hypothetical protein compare
Atu2115 -0.8 -3.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4133 -0.8 -1.6 hypothetical protein compare
Atu0413 -0.8 -1.0 stress induced protein compare
Atu0344 -0.8 -3.0 hypothetical protein compare
Atu2239 -0.8 -1.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2801 -0.8 -2.4 precorrin-2 C20 methyltransferase compare
Atu0923 -0.7 -3.2 hypothetical protein compare
Atu1780 -0.7 -4.2 ATP-dependent DNA helicase compare
Atu2809 -0.7 -3.6 cobalamin biosynthesis protein compare
Atu1602 -0.7 -2.8 transcriptional activator, Crp family compare
Atu4055 -0.7 -2.8 endo-1,3-1,4-beta-glycanase compare
Atu8018 -0.7 -0.6 hypothetical protein compare
Atu3517 -0.7 -2.7 acetyltransferase compare
Atu4538 -0.7 -3.9 3-carboxy-cis,cis-muconate cycloisomerase compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms