Experiment set12IT056 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most detrimental genes:

  gene name fitness t score description  
Atu5121 +2.5 11.0 two component response regulator compare
Atu8063 +2.3 12.3 hypothetical protein compare
Atu3794 +1.7 3.9 FadR family transcriptional regulator compare
Atu8158 +1.5 2.4 hypothetical protein compare
Atu2335 +1.4 1.8 hypothetical protein compare
Atu5115 +1.3 1.7 hypothetical protein compare
Atu3791 +1.2 3.9 L-asparaginase compare
Atu1639 +1.1 2.5 hypothetical protein compare
Atu1219 +1.1 1.0 hypothetical protein compare
Atu2788 +1.1 1.5 citrate lyase, beta subunit compare
Atu2029 +1.0 2.4 hypothetical protein compare
Atu8088 +1.0 1.2 hypothetical protein compare
Atu5164 +1.0 1.4 type IV secretion protein AvhB3 compare
Atu1254 +1.0 1.4 transcriptional regulator, ArsR family compare
Atu3497 +1.0 1.6 hypothetical protein compare
Atu8056 +0.9 1.4 hypothetical protein compare
Atu0524 +0.9 3.4 transcriptional regulator, LuxR family compare
Atu1878 +0.8 1.1 hypothetical protein compare
Atu1241 +0.8 3.3 hypothetical protein compare
Atu1905 +0.8 1.6 short chain dehydrogenase compare
Atu1503 +0.8 1.2 hypothetical protein compare
Atu0730 +0.8 1.5 hypothetical protein compare
Atu1001 +0.8 3.0 hypothetical protein compare
Atu0431 +0.8 3.8 apaG protein compare
Atu3466 +0.8 1.7 ArsR family transcriptional regulator compare
Atu4634 +0.8 1.6 hypothetical protein compare
Atu4896 +0.8 1.8 acetyltransferase compare
Atu4061 +0.8 2.7 exopolysaccharide production repressor protein compare
Atu5122 +0.8 3.3 3-ketoacyl-ACP reductase compare
Atu1337 +0.8 1.7 hypothetical protein compare
Atu1884 +0.7 1.7 ABC transporter, substrate binding protein (aliphatic sulfonate) compare
Atu8032 +0.7 2.4 hypothetical protein compare
Atu8128 +0.7 2.5 putative bacteriophage P2 tail protein compare
Atu4527 +0.7 1.4 hypothetical protein compare
Atu4232 +0.7 4.2 GntR family transcriptional regulator compare
Atu3064 +0.7 1.5 ABC transporter permease compare
Atu1227 +0.7 1.5 hypothetical protein compare
Atu4214 +0.7 1.6 cold shock protein compare
Atu1333 +0.7 2.0 outer membrane protein compare
Atu2772 +0.7 1.5 Invasion protein A compare
Atu1952 +0.7 0.9 hypothetical protein compare
Atu4117 +0.7 1.2 dipeptide ABC transporter ATPase compare
Atu5489 +0.7 1.3 hypothetical protein compare
Atu5471 +0.7 2.5 hypothetical protein compare
Atu0095 +0.7 0.9 hypothetical protein compare
Atu3423 +0.7 1.4 hypothetical protein compare
Atu3610 +0.7 3.4 transporter compare
Atu0549 +0.7 3.3 hypothetical protein compare
Atu1638 +0.6 1.3 hypothetical protein compare
Atu8141 +0.6 1.8 hypothetical protein compare
Atu4470 +0.6 1.2 iron ABC transporter ATPase compare
Atu4029 +0.6 1.2 gluconolactonase compare
Atu0744 +0.6 1.3 hypothetical protein compare
Atu3183 +0.6 0.7 hypothetical protein compare
Atu3432 +0.6 1.5 desulfurizing enzyme compare
Atu3633 +0.6 2.0 hypothetical protein compare
Atu3001 +0.6 1.3 hypothetical protein compare
Atu1640 +0.6 1.1 hypothetical protein compare
Atu1818 +0.6 2.3 hypothetical protein compare
Atu1754 +0.6 1.6 hypothetical protein compare
Atu1696 +0.6 1.3 hypothetical protein compare
Atu3759 +0.6 1.0 hypothetical protein compare
Atu4537 +0.6 1.1 amino acid ABC transporter permease compare
Atu0525 +0.6 2.5 transcriptional regulator, LuxR family compare
Atu0554 +0.6 1.4 flagellar basal-body rod protein compare
Atu0612 +0.6 1.8 ABC transporter, membrane spanning protein compare
Atu4589 +0.6 1.2 transmembrane transport protein compare
Atu0463 +0.6 2.3 hypothetical protein compare
Atu0181 +0.6 1.8 hypothetical protein compare
Atu0941 +0.6 0.6 hypothetical protein compare
Atu0538 +0.6 1.1 hypothetical protein compare
Atu1031 +0.6 0.8 hypothetical protein compare
Atu0627 +0.6 2.8 carboxymethylenebutenolidase compare
Atu1971 +0.6 0.8 hypothetical protein compare
Atu4753 +0.6 0.9 amino acid ABC transporter permease compare
Atu4743 +0.6 2.8 LacI family transcriptional regulator compare
Atu0267 +0.5 1.2 hypothetical protein compare
Atu3577 +0.5 1.7 transcriptional regulator compare
Atu5131 +0.5 1.9 ABC transporter nucleotide binding/ATPase compare
Atu2783 +0.5 1.7 acetyltransferase compare
Atu4342 +0.5 1.3 hypothetical protein compare
Atu2058 +0.5 2.4 hypothetical protein compare
Atu3679 +0.5 2.7 siderophore biosynthesis protein compare
Atu2478 +0.5 1.9 hypothetical protein compare
Atu3872 +0.5 2.4 hypothetical protein compare
Atu8116 +0.5 2.5 hypothetical protein compare
Atu3657 +0.5 2.5 hypothetical protein compare
Atu0654 +0.5 1.5 transcriptional regulator, LysR family compare
Atu1709 +0.5 3.0 glycosyl hydrolase compare
Atu1003 +0.5 3.3 hypothetical protein compare
Atu0593 +0.5 2.5 ABC transporter, membrane spanning protein compare
Atu6165 +0.5 0.6 hypothetical protein compare
Atu2163 +0.5 0.6 hypothetical protein compare
Atu8203 +0.5 1.3 hypothetical protein compare
Atu3265 +0.5 2.1 hypothetical protein compare
Atu1539 +0.5 1.5 sulfate permease compare
Atu6036 +0.5 0.8 entry-exclusion protein compare
Atu1466 +0.5 0.5 hypothetical protein compare
Atu6020 +0.5 1.5 conserved hypothetical protein compare
Atu1323 +0.5 0.8 hypothetical protein compare
Atu6160 +0.5 1.4 conserved hypothetical protein compare
Atu1230 +0.5 1.1 hypothetical protein compare
Atu6189 +0.5 0.9 protein secretion chaperone compare
Atu1527 +0.5 0.7 nitrogen fixation protein FixS compare
Atu5028 +0.5 1.4 IS426 transposase compare
Atu2618 +0.5 2.5 methyl-accepting chemotaxis protein compare
Atu4567 +0.5 1.7 ROK family transcriptional regulator compare
Atu2296 +0.5 1.2 2-dehydro-3-deoxygluconokinase compare
Atu1782 +0.5 1.8 hypothetical protein compare
Atu3510 +0.5 1.1 amidohydrolase compare
Atu0279 +0.5 1.8 transcriptional regulator, TetR family compare
Atu4144 +0.5 0.5 hypothetical protein compare
Atu2677 +0.5 0.9 protein tyrosine phosphatase compare
Atu0842 +0.5 0.7 hypothetical protein compare
Atu1302 +0.5 1.1 hypothetical protein compare
Atu0943 +0.5 0.6 hypothetical protein compare
Atu1996 +0.5 2.1 hypothetical protein compare
Atu3042 +0.5 2.3 hypothetical protein compare
Atu3962 +0.5 2.1 calcium-binding protein, regucalcin compare
Atu6133 +0.5 2.5 conserved hypothetical protein compare
Atu3491 +0.5 1.0 hypothetical protein compare
Atu1437 +0.5 2.4 hypothetical protein compare
Atu0805 +0.5 1.9 hypothetical protein compare
Atu1482 +0.4 1.8 hypothetical protein compare
Atu0553 +0.4 2.6 flagellar hook-basal body complex protein compare
Atu4223 +0.4 1.0 sarcosine oxidase delta subunit compare
Atu4416 +0.4 0.8 phosphopantetheinyl transferase compare
Atu3487 +0.4 1.7 sugar ABC transporter substrate-binding protein compare
Atu1203 +0.4 1.4 hypothetical protein compare
Atu0156 +0.4 1.6 hypothetical protein compare
Atu3680 +0.4 1.4 siderophore biosynthesis protein compare
Atu1676 +0.4 1.7 para-aminobenzoate synthase component I compare
Atu4714 +0.4 1.6 hypothetical protein compare
Atu2068 +0.4 1.4 hypothetical protein compare
Atu3388 +0.4 1.3 iron ABC transporter ATPase compare
Atu2189 +0.4 2.0 hypothetical protein compare
Atu4759 +0.4 2.1 threonine dehydratase compare
Atu3129 +0.4 2.4 polygalacturonase-like protein compare
Atu8120 +0.4 1.6 hypothetical protein compare
Atu1486 +0.4 1.7 hypothetical protein compare
Atu4391 +0.4 1.6 nitric oxide reductase NorE protein compare
Atu3915 +0.4 1.8 MerR family transcriptional regulator compare
Atu4806 +0.4 2.6 glycosyltransferase compare
Atu2676 +0.4 2.3 4a-hydroxytetrahydrobiopterin dehydratase compare
Atu4598 +0.4 1.9 ABC transporter permease compare
Atu2216 +0.4 1.4 Xaa-Pro dipeptidase compare
Atu2538 +0.4 2.2 N-methylproline demethylase compare
Atu0540 +0.4 1.5 hypothetical protein compare
Atu4164 +0.4 2.3 two component sensor kinase compare
Atu2204 +0.4 0.9 hypothetical protein compare
Atu1520 +0.4 1.8 ABC transporter, nucleotide binding/ATPase protein (zinc) compare
Atu0066 +0.4 2.8 putative kinase compare
Atu4034 +0.4 2.1 two component sensor kinase compare
Atu1892 +0.4 0.8 hypothetical protein compare
Atu1953 +0.4 1.6 hypothetical protein compare
Atu1799 +0.4 1.9 hypothetical protein compare
Atu4611 +0.4 1.5 transposase compare
Atu0528 +0.4 1.7 large conductance mechanosensitive channel protein compare
Atu2725 +0.4 1.7 transcriptional regulator, DeoR family compare
Atu4746 +0.4 2.4 sugar ABC transporter permease compare
Atu0048 +0.4 2.9 hypothetical protein compare
Atu8143 +0.4 1.1 hypothetical protein compare
Atu3457 +0.4 1.6 ABC transporter permease compare
Atu2675 +0.4 1.1 hypothetical protein compare
Atu1662 +0.4 1.2 hypothetical protein compare
Atu0908 +0.4 1.4 transcriptional regulator compare
Atu4558 +0.4 2.2 sugar ABC transporter permease compare
Atu3225 +0.4 1.9 ABC transporter permease compare
Atu3678 +0.4 1.1 siderophore biosynthesis protein compare
Atu5169 +0.4 1.9 type IV secretion protein AvhB8 compare
Atu2735 +0.4 1.2 threonine dehydratase compare
Atu3012 +0.4 0.8 hypothetical protein compare
Atu2496 +0.4 2.1 nitroreducatase compare
Atu3268 +0.4 1.6 dipeptide ABC transporter permease compare
Atu5207 +0.4 0.9 hypothetical protein compare
Atu2013 +0.4 1.6 ABC transporter, membrane spanning protein compare
Atu3199 +0.4 2.6 ribose ABC transporter permease compare
Atu3525 +0.4 2.7 hypothetical protein compare
Atu0197 +0.4 1.2 ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine) compare
Atu1351 +0.4 1.7 hypothetical protein compare
Atu1472 +0.4 1.4 hydrolase compare
Atu3175 +0.4 2.0 hypothetical protein compare
Atu4583 +0.4 1.4 superoxide dismutase compare
Atu1888 +0.4 2.3 two component sensor kinase compare
Atu0986 +0.4 0.6 hypothetical protein compare
Atu3692 +0.4 0.7 sigma factor compare
Atu4086 +0.4 1.3 gluconate 5-dehydrogenase compare
Atu0875 +0.4 1.9 hypothetical protein compare
Atu0764 +0.4 1.2 hypothetical protein compare
Atu4758 +0.4 2.0 ectoine utilization protein EutC compare
Atu0277 +0.4 1.4 hypothetical protein compare
Atu2262 +0.4 2.3 hypothetical protein compare
Atu4023 +0.4 1.9 ferrichrome ABC transporter substrate-binding protein compare
Atu3892 +0.4 0.9 hypothetical protein compare
Atu4274 +0.4 1.2 hypothetical protein compare
Atu1858 +0.4 1.0 hypothetical protein compare
Atu1499 +0.4 2.7 penicillin binding protein compare
Atu3773 +0.4 0.6 hypothetical protein compare
Atu3973 +0.4 1.3 hypothetical protein compare
Atu2375 +0.4 1.3 UDP-hexose transferase compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms