Experiment set12IT055 for Pseudomonas putida KT2440

Compare to:

benzoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_3951 -8.1 -5.6 3-oxoadipate CoA-transferase subunit A compare
PP_3952 -8.0 -7.8 3-oxoadipate CoA-transferase subunit A compare
PP_3511 -8.0 -5.5 Branched-chain-amino-acid aminotransferase compare
PP_3164 -7.8 -5.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1988 -7.7 -7.5 3-isopropylmalate dehydrogenase compare
PP_4680 -7.3 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3715 -6.9 -4.7 Muconate cycloisomerase 1 compare
PP_0966 -6.8 -12.2 Histidinol dehydrogenase compare
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_1375 -6.7 -14.3 transcription regulatory protein (pca regulon) compare
PP_0420 -6.7 -13.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -6.7 -7.9 Indole-3-glycerol phosphate synthase compare
PP_1377 -6.6 -9.1 beta-ketoadipyl-CoA thiolase compare
PP_5014 -6.6 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5155 -6.5 -7.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5098 -6.4 -9.8 methionine biosynthesis protein MetW compare
PP_0967 -6.4 -13.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -6.4 -6.2 Ornithine carbamoyltransferase compare
PP_5015 -6.3 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4678 -6.2 -17.9 Ketol-acid reductoisomerase compare
PP_4679 -6.1 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -6.1 -15.7 homoserine O-acetyltransferase compare
PP_4890 -6.1 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_3716 -6.0 -12.1 HTH-type transcriptional regulator compare
PP_0164 -5.9 -9.1 conserved protein of unknown function compare
PP_0293 -5.8 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2371 -5.8 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4723 -5.8 -10.5 Carbamoyl-phosphate synthase large chain compare
PP_5185 -5.8 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -5.8 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_4724 -5.8 -6.9 Carbamoyl-phosphate synthase small chain compare
PP_0290 -5.6 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -5.6 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3714 -5.6 -8.2 Muconolactone Delta-isomerase compare
PP_0417 -5.5 -19.8 Anthranilate synthase component 1 compare
PP_4909 -5.5 -10.6 phosphoserine phosphatase compare
PP_2327 -5.5 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1380 -5.5 -7.7 3-oxoadipate enol-lactonase 2 compare
PP_2001 -5.5 -12.6 O-succinylhomoserine sulfhydrylase compare
PP_1088 -5.4 -10.9 Argininosuccinate synthase compare
PP_0083 -5.3 -3.7 tryptophan synthase beta chain compare
PP_0421 -5.3 -9.6 Anthranilate phosphoribosyltransferase compare
PP_0292 -5.3 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -5.1 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -5.1 -6.1 Acetylglutamate kinase compare
PP_0184 -5.0 -3.5 Argininosuccinate lyase compare
PP_3999 -5.0 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1231 -4.9 -9.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0082 -4.8 -4.6 tryptophan synthase alpha chain compare
PP_0289 -4.7 -7.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -4.6 -7.1 Dihydroxy-acid dehydratase compare
PP_4799 -4.6 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_2168 -4.5 -11.4 Transaldolase compare
PP_0291 -4.4 -3.8 conserved protein of unknown function compare
PP_1025 -4.3 -11.9 2-isopropylmalate synthase compare
PP_0691 -4.2 -6.2 Glutamate 5-kinase compare
PP_3162 -4.0 -7.9 benzoate 1,2-dioxygenase subunit beta compare
PP_0787 -3.9 -6.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2388 -3.7 -4.8 Transporter, LysE family compare
PP_3163 -3.5 -8.9 benzoate 1,2-dioxygenase electron transfer component compare
PP_2370 -3.3 -4.8 conserved protein of unknown function compare
PP_4699 -3.3 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3590 -3.3 -7.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0393 -3.2 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5303 -3.1 -5.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1426 -3.1 -13.4 L-aspartate oxidase compare
PP_3159 -3.0 -10.4 BenABC operon transcriptional activator compare
PP_4700 -3.0 -2.1 pantothenate synthetase compare
PP_5104 -3.0 -8.4 thiazole synthase compare
PP_5095 -3.0 -2.4 pyrroline-5-carboxylate reductase compare
PP_3484 -2.9 -5.9 Response regulator receiver protein compare
PP_3161 -2.8 -11.2 benzoate 1,2-dioxygenase subunit alpha compare
PP_4782 -2.8 -6.4 Phosphomethylpyrimidine kinase compare
PP_1233 -2.7 -5.3 sulfurtransferase compare
PP_0735 -2.5 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_1733 -2.5 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4120 -2.5 -5.3 NADH-quinone oxidoreductase subunit B compare
PP_4004 -2.4 -4.5 DNA translocase FtsK compare
PP_2328 -2.4 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_1912 -2.4 -4.9 Phosphate acyltransferase compare
PP_4122 -2.3 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4922 -2.3 -12.1 Phosphomethylpyrimidine synthase compare
PP_3821 -2.2 -6.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4696 -2.2 -5.1 Nitrogen regulation protein NR(I) compare
PP_1999 -2.2 -2.2 membrane protein required for colicin V production compare
PP_4993 -2.1 -4.0 Glutathione synthetase compare
PP_4126 -2.1 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_0339 -2.1 -5.3 Pyruvate dehydrogenase E1 component compare
PP_0001 -2.1 -1.8 probable chromosome-partitioning protein compare
PP_3105 -2.0 -2.1 conserved membrane protein of unknown function compare
PP_1348 -2.0 -7.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1378 -2.0 -6.1 alpha-ketoglutarate permease compare
PP_4364 -2.0 -7.0 putative Anti-sigma F factor antagonist compare
PP_1216 -1.9 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2356 -1.9 -10.6 putative Phytochrome family protein compare
PP_3493 -1.8 -8.5 Transcriptional regulator, LysR family compare
PP_5217 -1.8 -12.4 Polyphosphate kinase compare
PP_1664 -1.8 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0986 -1.8 -3.7 aminomethyltransferase compare
PP_0834 -1.8 -2.3 Sec translocation complex subunit YajC compare
PP_2390 -1.8 -5.5 Transcriptional regulator, LysR family compare
PP_1629 -1.7 -4.1 Protein RecA compare
PP_5571 -1.7 -1.8 conserved protein of unknown function compare
PP_4129 -1.7 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1994 -1.6 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_1654 -1.6 -3.3 cysteine synthase B compare
PP_4917 -1.6 -3.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3359 -1.6 -3.5 putative Hydroxycinnamic acid degradation regulator compare
PP_5331 -1.6 -3.1 Long-chain acyl-CoA thioester hydrolase compare
PP_0406 -1.6 -5.1 Nucleotidyltransferase family protein compare
PP_3248 -1.6 -2.0 Dyp-type peroxidase family protein compare
PP_2136 -1.6 -4.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4902 -1.6 -1.9 Oligoribonuclease compare
PP_2354 -1.5 -7.8 Sensory box histidine kinase/response regulator compare
PP_1493 -1.5 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2087 -1.5 -2.5 CmpX protein compare
PP_0914 -1.5 -8.9 GGDEF domain protein compare
PP_4342 -1.5 -3.1 flagellar synthesis regulator, putative ATPase compare
PP_5230 -1.5 -2.8 Tyrosine recombinase XerC compare
PP_4340 -1.5 -3.6 response regulator for chemotactic signal transduction compare
PP_4121 -1.5 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4697 -1.4 -2.5 poly(A) polymerase compare
PP_4392 -1.4 -7.8 chemotaxis protein methyltransferase compare
PP_4131 -1.4 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_3519 -1.4 -1.5 putative Lipoprotein compare
PP_1783 -1.4 -1.0 dTDP-glucose pyrophosphorylase compare
PP_4370 -1.4 -4.4 Flagellar hook-basal body complex protein FliE compare
PP_0988 -1.4 -8.3 glycine dehydrogenase compare
PP_3713 -1.4 -6.2 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) compare
PP_2720 -1.4 -1.5 conserved protein of unknown function compare
PP_0435 -1.4 -9.5 Peptidase, M23/M37 family compare
PP_3662 -1.4 -7.8 conserved protein of unknown function compare
PP_1215 -1.4 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_0833 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
PP_4375 -1.4 -6.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_5310 -1.4 -4.7 junction-specific ATP-dependent DNA helicase compare
PP_2145 -1.3 -4.9 beta-N-acetylglucosaminidase compare
PP_4332 -1.3 -4.4 Chemotaxis protein CheW compare
PP_2414 -1.3 -1.9 conserved exported protein of unknown function compare
PP_4358 -1.3 -8.0 flagellar synthesis, switching and energizing component compare
PP_4124 -1.3 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_3790 -1.3 -7.4 diaminopimelate epimerase compare
PP_4130 -1.3 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0368 -1.3 -6.2 putative Acyl-CoA dehydrogenase compare
PP_1097 -1.3 -1.7 Methionine--tRNA ligase compare
PP_5039 -1.3 -2.5 conserved protein of unknown function compare
PP_5198 -1.3 -1.9 conserved protein of unknown function compare
PP_4481 -1.3 -6.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0958 -1.3 -4.0 phospholipid ABC transporter ATP-binding subunit compare
PP_4396 -1.2 -2.5 conserved protein of unknown function compare
PP_1764 -1.2 -5.9 Phosphoglycolate phosphatase 2 compare
PP_1734 -1.2 -2.3 Probable septum site-determining protein MinC compare
PP_0612 -1.2 -6.0 FAD-dependent glycine/D-amino acid oxidase compare
PP_4338 -1.2 -5.4 Chemotaxis histidine kinase CheA compare
PP_5674 -1.2 -3.4 conserved protein of unknown function compare
PP_t13 -1.2 -3.0 tRNA-Lys compare
PP_0872 -1.2 -4.0 Peptide chain release factor 3 compare
PP_4961 -1.2 -1.3 putative Lipoprotein compare
PP_1353 -1.2 -0.8 conserved membrane protein of unknown function compare
PP_2307 -1.1 -2.3 conserved protein of unknown function compare
PP_4369 -1.1 -5.7 Flagellar M-ring protein compare
PP_0997 -1.1 -5.7 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_2737 -1.1 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0218 -1.1 -5.0 Sensory box protein compare
PP_4880 -1.1 -5.6 exoribonuclease R compare
PP_0961 -1.1 -4.9 toluene tolerance protein compare
PP_1387 -1.1 -4.1 Probable HTH-type transcriptional regulator TtgR compare
PP_2433 -1.1 -2.0 conserved protein of unknown function compare
PP_0405 -1.1 -8.2 conserved protein of unknown function compare
PP_5146 -1.1 -5.8 RNA pyrophosphohydrolase compare
PP_0165 -1.1 -7.8 GGDEF domain protein compare
PP_1778 -1.1 -3.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1508 -1.0 -3.2 conserved protein of unknown function compare
PP_0484 -1.0 -3.5 transporter of an unknown substrate compare
PP_4480 -1.0 -4.9 arginine N-succinyltransferase, subunit alpha compare
PP_5706 -1.0 -1.3 Sec translocation complex - SecG subunit compare
PP_0960 -1.0 -3.1 phospholipid ABC transporter binding protein compare
PP_5048 -1.0 -4.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4337 -1.0 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2402 -1.0 -1.8 putative Sensor histidine kinase compare
PP_1410 -1.0 -1.4 conserved protein of unknown function compare
PP_0340 -1.0 -7.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_3810 -1.0 -2.0 conserved protein of unknown function compare
PP_4904 -1.0 -4.5 Flagellar motor rotation protein compare
PP_4830 -1.0 -4.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_0401 -1.0 -2.1 Ribosomal RNA small subunit methyltransferase A compare
PP_0168 -1.0 -8.6 putative surface adhesion protein compare
PP_5227 -1.0 -3.7 diaminopimelate decarboxylase compare
PP_2929 -1.0 -5.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0962 -1.0 -2.2 toluene-tolerance protein compare
PP_1291 -1.0 -5.1 PhoH family protein compare
PP_4943 -1.0 -1.6 putative Glycosyl transferase compare
PP_1609 -1.0 -2.3 conserved protein of unknown function compare
PP_4569 -1.0 -2.1 conserved protein of unknown function compare
PP_0888 -1.0 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_1322 -1.0 -1.2 putative Lipoprotein compare
PP_3494 -0.9 -4.1 conserved exported protein of unknown function compare
PP_1355 -0.9 -7.7 Muropeptide permease AmpG compare
PP_4519 -0.9 -7.0 Agglutination protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source benzoic acid in Pseudomonas putida KT2440

For carbon source benzoic acid across organisms