Experiment set12IT055 for Pseudomonas putida KT2440

Compare to:

benzoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_4171 +1.8 13.1 conserved exported protein of unknown function compare
PP_1650 +1.3 10.4 Sensor protein GacS compare
PP_0630 +1.3 2.3 DNA gyrase inhibitor YacG compare
PP_4296 +1.2 2.9 conserved exported protein of unknown function compare
PP_4099 +1.2 10.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5053 +1.1 4.6 Protein-export protein SecB compare
PP_2889 +1.1 5.7 putative Transmembrane regulator PrtR compare
PP_4373 +1.1 7.7 Transcriptional regulator FleQ compare
PP_1632 +1.0 3.0 conserved protein of unknown function compare
PP_4271 +0.9 1.6 conserved protein of unknown function compare
PP_5441 +0.9 2.8 protein of unknown function compare
PP_5007 +0.8 2.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5600 +0.8 3.9 conserved protein of unknown function compare
PP_4172 +0.8 4.7 conserved exported protein of unknown function compare
PP_1186 +0.8 1.1 two component system DNA-binding transcriptional dual regulator compare
PP_2337 +0.8 1.4 aconitate isomerase compare
PP_5270 +0.8 4.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5267 +0.8 2.3 putative cytochrome c5 compare
PP_2848 +0.8 3.3 urease accessory protein compare
PP_3401 +0.7 3.5 conserved protein of unknown function compare
PP_1562 +0.7 2.3 putative Phage terminase, small subunit compare
PP_4952 +0.7 1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3831 +0.7 2.5 conserved protein of unknown function compare
PP_3926 +0.7 1.9 short-chain dehydrogenase compare
PP_5575 +0.7 2.1 conserved protein of unknown function compare
PP_2054 +0.7 2.4 putative DNA-binding transcriptional regulator compare
PP_0685 +0.7 2.5 conserved protein of unknown function compare
PP_2653 +0.7 2.3 Transcriptional regulator, Cro/CI family compare
PP_3094 +0.7 2.4 conserved exported protein of unknown function compare
PP_1544 +0.7 2.4 conserved protein of unknown function compare
PP_4793 +0.6 1.7 conserved protein of unknown function compare
PP_4217 +0.6 5.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2773 +0.6 1.6 conserved protein of unknown function compare
PP_3761 +0.6 5.0 Sensor histidine kinase/response regulator compare
PP_4424 +0.6 1.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3730 +0.6 1.4 Transcriptional regulatory protein AruR compare
PP_4173 +0.6 3.0 Sensor histidine kinase/response regulator compare
PP_4959 +0.6 3.7 diguanylate cyclase compare
PP_3234 +0.6 3.4 Heat shock protein, HSP20 family compare
PP_1788 +0.6 2.6 conserved protein of unknown function compare
PP_2777 +0.6 3.5 putative Acyl carrier protein compare
PP_3509 +0.6 2.1 Glyoxalase family protein compare
PP_1623 +0.5 4.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4642 +0.5 0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_4792 +0.5 1.3 conserved exported protein of unknown function compare
PP_3559 +0.5 2.0 glycine betaine ABC transporter (permease) compare
PP_2878 +0.5 1.7 conserved protein of unknown function compare
PP_1834 +0.5 1.8 conserved protein of unknown function compare
PP_2103 +0.5 1.7 conserved protein of unknown function compare
PP_3211 +0.5 2.7 ABC transporter, ATP-binding protein compare
PP_4311 +0.5 2.6 putative D-amino acid dehydrogenase 2 small subunit compare
PP_2970 +0.5 1.4 conserved exported protein of unknown function compare
PP_0062 +0.5 1.6 3-methyl-adenine DNA glycosylase I compare
PP_5640 +0.5 1.9 conserved protein of unknown function compare
PP_2593 +0.5 2.7 Ferric siderophore ABC transporter, permease protein compare
PP_2858 +0.5 1.8 conserved exported protein of unknown function compare
PP_2765 +0.5 1.3 putative Sulfonate monooxygenase MsuD compare
PP_3946 +0.5 0.8 HTH-type transcriptional repressor NicR compare
PP_0805 +0.5 3.5 Outer membrane efflux protein compare
PP_0287 +0.5 2.6 conserved exported protein of unknown function compare
PP_2756 +0.5 1.0 conserved protein of unknown function compare
PP_5382 +0.5 2.1 putative exported protein compare
PP_1237 +0.5 0.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2192 +0.5 2.0 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_5516 +0.5 2.6 protein of unknown function compare
PP_0173 +0.5 2.7 putative transcriptional factor-related protein compare
PP_4418 +0.5 2.0 conserved protein of unknown function compare
PP_2575 +0.5 0.8 conserved exported protein of unknown function compare
PP_2559 +0.5 2.5 Metalloprotease secretion protein compare
PP_4073 +0.5 1.2 conserved exported protein of unknown function compare
PP_2712 +0.5 1.8 conserved exported protein of unknown function compare
PP_2723 +0.5 2.4 Uncharacterized oxidoreductase YhdF compare
PP_0135 +0.5 2.1 conserved exported protein of unknown function compare
PP_0760 +0.5 2.1 conserved membrane protein of unknown function compare
PP_0574 +0.5 3.9 DNA-binding response regulator, LuxR family compare
PP_2592 +0.5 1.5 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1255 +0.5 2.2 putative cis-4-hydroxy-D-proline oxidase compare
PP_0957 +0.5 1.4 D-arabinose 5-phosphate isomerase compare
PP_1096 +0.5 1.0 putative electron transport complex protein compare
PP_3375 +0.5 2.3 endonuclease I compare
PP_1739 +0.5 2.1 conserved membrane protein of unknown function compare
PP_1386 +0.5 3.1 Probable efflux pump periplasmic linker TtgA compare
PP_1655 +0.5 1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0185 +0.4 2.8 Positive alginate biosynthesis regulatory protein compare
PP_3814 +0.4 1.7 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_4470 +0.4 1.5 putative transcriptional regulator (Arc domain-containing) compare
PP_0640 +0.4 1.2 conserved protein of unknown function compare
PP_2510 +0.4 1.1 conserved protein of unknown function compare
PP_4419 +0.4 1.0 transposase compare
PP_0972 +0.4 1.4 UPF0213 protein PP_0972 compare
PP_3417 +0.4 2.0 D-gluconate transporter compare
PP_3043 +0.4 1.2 conserved protein of unknown function compare
PP_2332 +0.4 2.8 conserved exported protein of unknown function compare
PP_0232 +0.4 0.6 ATP-binding taurine transporter subunit compare
PP_2073 +0.4 2.2 Acetyltransferase, GNAT family compare
PP_3098 +0.4 0.8 conserved protein of unknown function compare
PP_5054 +0.4 1.0 glutaredoxin 3 compare
PP_0125 +0.4 1.3 putative cytochrome c-type protein compare
PP_5654 +0.4 0.7 putative phosphotriesterase compare
PP_4662 +0.4 1.0 conserved protein of unknown function compare
PP_1633 +0.4 1.2 conserved exported protein of unknown function compare
PP_1466 +0.4 1.4 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_5153 +0.4 2.2 putative isomerase/hydrolase compare
PP_2035 +0.4 2.3 benzoate transport protein compare
PP_4404 +0.4 3.0 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_5667 +0.4 1.1 putative microcin B17-like-processing protein, McbC family compare
PP_4769 +0.4 1.5 conserved protein of unknown function compare
PP_2036 +0.4 2.6 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0921 +0.4 1.1 Transcriptional regulator, ArsR family compare
PP_5001 +0.4 1.1 protease HslVU, ATPase component compare
PP_2379 +0.4 1.9 putative cytochrome oxidase biogenesis protein compare
PP_2413 +0.4 3.2 GGDEF family protein compare
PP_4251 +0.4 2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_3488 +0.4 2.3 Sco1/SenC family protein compare
PP_2030 +0.4 1.3 conserved protein of unknown function compare
PP_3285 +0.4 1.9 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_2130 +0.4 2.6 putative Soluble lytic transglycosylase compare
PP_3643 +0.4 1.4 putative Oxidoreductase compare
PP_0705 +0.4 2.1 DNA-3-methyladenine glycosylase compare
PP_0298 +0.4 1.6 AraC-family transcriptional regulator compare
PP_1987 +0.4 1.1 Methlytransferase, UbiE/COQ5 family compare
PP_1774 +0.4 1.0 conserved exported protein of unknown function compare
PP_2360 +0.4 1.1 putative type 1 pili subunit CsuA/B protein compare
PP_1575 +0.4 1.1 conserved protein of unknown function compare
PP_0080 +0.4 1.2 conserved protein of unknown function compare
PP_3454 +0.4 1.6 putative transcriptional regulatory protein compare
PP_2759 +0.4 1.6 ribose ABC transporter - ATP-binding subunit compare
PP_4843 +0.4 2.3 putative Urea ABC transporter, permease protein compare
PP_5514 +0.4 1.5 conserved protein of unknown function compare
PP_4226 +0.4 1.3 conserved protein of unknown function compare
PP_4005 +0.4 1.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_0177 +0.4 1.6 conserved protein of unknown function compare
PP_3142 +0.4 2.0 putative Sugar transferase compare
PP_3117 +0.4 1.1 putative protein involved in error-prone processing of DNA lesions compare
PP_2118 +0.4 1.3 conserved protein of unknown function compare
PP_4461 +0.4 2.5 Major facilitator family transporter compare
PP_0307 +0.4 1.2 conserved exported protein of unknown function compare
PP_0181 +0.4 1.2 conserved protein of unknown function compare
PP_1892 +0.4 1.1 conserved protein of unknown function compare
PP_4835 +0.4 0.9 conserved exported protein of unknown function compare
PP_4945 +0.4 1.9 23S rRNA m(6)A2030 methyltransferase compare
PP_2408 +0.4 2.1 cobalt-zinc-cadmium resistance protein compare
PP_4069 +0.4 1.4 conserved protein of unknown function compare
PP_1729 +0.4 0.8 conserved protein of unknown function compare
PP_2684 +0.4 1.0 conserved membrane protein of unknown function compare
PP_1417 +0.4 1.1 putative Tricarboxylate transport protein TctB compare
PP_1236 +0.4 1.6 putative Glycine cleavage system transcriptional repressor compare
PP_4575 +0.4 1.9 Urea amidolyase-related protein compare
PP_4947 +0.4 3.0 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_4156 +0.4 1.3 Transcriptional regulator, LysR family compare
PP_2816 +0.4 1.9 putative Transcriptional regulator NfxB compare
PP_4944 +0.4 1.9 Carbamoyltransferase compare
PP_1385 +0.4 2.9 Probable efflux pump membrane transporter TtgB compare
PP_5449 +0.4 1.5 conserved exported protein of unknown function compare
PP_0174 +0.4 2.8 conserved protein of unknown function compare
PP_2227 +0.4 1.5 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_0542 +0.4 2.0 ethanolamine ammonia-lyase, beta-subunit compare
PP_5547 +0.4 2.0 protein of unknown function compare
PP_4913 +0.4 1.6 conserved protein of unknown function compare
PP_5354 +0.4 2.0 conserved protein of unknown function compare
PP_2474 +0.4 1.4 Glutathione S-transferase family protein compare
PP_4214 +0.4 1.3 pyoverdine biosynthesis related protein compare
PP_1926 +0.4 1.2 putative phosphotyrosine-protein phosphatase compare
PP_2334 +0.4 1.6 2-methylisocitrate lyase compare
PP_4233 +0.4 1.5 putative Oxidoreductase, small subunit compare
PP_3876 +0.4 1.4 conserved protein of unknown function compare
PP_0804 +0.4 2.2 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3353 +0.4 1.6 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_0656 +0.4 1.6 putative Amino acid ABC transporter, permease protein compare
PP_1324 +0.4 1.3 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_0303 +0.4 1.5 dehydrocarnitine cleavage enzyme compare
PP_0750 +0.3 1.1 conserved protein of unknown function compare
PP_2209 +0.3 2.3 2-aminoethylphosphonate--pyruvate transaminase compare
PP_5681 +0.3 1.2 conserved protein of unknown function compare
PP_2672 +0.3 1.4 Transcriptional activator protein ExaE compare
PP_3254 +0.3 1.5 putative Nucleosidase compare
PP_5423 +0.3 1.1 conserved membrane protein of unknown function compare
PP_5051 +0.3 0.5 conserved protein of unknown function compare
PP_2267 +0.3 1.5 putative Phage single-stranded DNA-binding protein compare
PP_0275 +0.3 1.0 conserved protein of unknown function compare
PP_1789 +0.3 1.5 Hydrolase, haloacid dehalogenase-like family compare
PP_2899 +0.3 0.5 conserved exported protein of unknown function compare
PP_4100 +0.3 1.1 Transcriptional regulator, Cro/CI family compare
PP_3056 +0.3 2.0 putative Pyocin R2_PP, tail fiber protein compare
PP_0240 +0.3 1.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4868 +0.3 1.6 Nicotinate phosphoribosyltransferase compare
PP_4151 +0.3 1.4 Excisionase domain protein compare
PP_3003 +0.3 1.6 3-dehydroquinate dehydratase 3, type II compare
PP_0236 +0.3 1.2 NAD(P)H-dependent FMN reductase subunit compare
PP_0719 +0.3 0.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0238 +0.3 1.4 alkanesulfonate monooxygenase compare
PP_3892 +0.3 0.7 conserved protein of unknown function compare
PP_1225 +0.3 1.0 7-carboxy-7-deazaguanine synthase compare
PP_2943 +0.3 1.9 putative Cytochrome c551 peroxidase compare
PP_0806 +0.3 3.0 putative Surface adhesion protein compare
PP_1388 +0.3 1.7 Drug resistance transporter, EmrB/QacA family compare
PP_0832 +0.3 0.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4316 +0.3 1.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3541 +0.3 0.7 Transporter, MgtC family compare
PP_4094 +0.3 1.0 conserved protein of unknown function compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source benzoic acid in Pseudomonas putida KT2440

For carbon source benzoic acid across organisms