Experiment set12IT052 for Pseudomonas putida KT2440

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
PP_0406 -8.5 -5.9 Nucleotidyltransferase family protein compare
PP_4364 -8.2 -5.6 putative Anti-sigma F factor antagonist compare
PP_1985 -7.9 -5.5 3-isopropylmalate dehydratase large subunit compare
PP_1988 -7.6 -7.4 3-isopropylmalate dehydrogenase compare
PP_4680 -7.6 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2433 -7.5 -5.1 conserved protein of unknown function compare
PP_0967 -7.3 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -6.8 -15.8 Ketol-acid reductoisomerase compare
PP_5097 -6.7 -13.6 homoserine O-acetyltransferase compare
PP_1995 -6.6 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -6.5 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -6.5 -7.7 Indole-3-glycerol phosphate synthase compare
PP_0966 -6.4 -13.0 Histidinol dehydrogenase compare
PP_4679 -6.3 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -6.3 -8.6 phosphoserine phosphatase compare
PP_1764 -6.3 -6.6 Phosphoglycolate phosphatase 2 compare
PP_0691 -6.1 -4.2 Glutamate 5-kinase compare
PP_5185 -6.0 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1231 -5.9 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4723 -5.9 -9.1 Carbamoyl-phosphate synthase large chain compare
PP_2001 -5.9 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_2168 -5.8 -11.8 Transaldolase compare
PP_0787 -5.8 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3484 -5.7 -7.8 Response regulator receiver protein compare
PP_0417 -5.6 -20.4 Anthranilate synthase component 1 compare
PP_3511 -5.5 -10.1 Branched-chain-amino-acid aminotransferase compare
PP_4724 -5.4 -7.5 Carbamoyl-phosphate synthase small chain compare
PP_4890 -5.4 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1088 -5.4 -10.4 Argininosuccinate synthase compare
PP_5098 -5.4 -11.0 methionine biosynthesis protein MetW compare
PP_2371 -5.4 -8.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5289 -5.3 -6.3 Acetylglutamate kinase compare
PP_5128 -5.3 -8.3 Dihydroxy-acid dehydratase compare
PP_0289 -5.0 -10.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -5.0 -3.5 tryptophan synthase alpha chain compare
PP_1079 -5.0 -8.2 Ornithine carbamoyltransferase compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_2868 -4.9 -9.3 Transcriptional regulator, Cro/CI family compare
PP_1986 -4.9 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_5347 -4.8 -13.8 pyruvate carboxylase subunit A compare
PP_3999 -4.8 -10.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -4.8 -7.7 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.7 -6.4 tryptophan synthase beta chain compare
PP_5095 -4.6 -3.1 pyrroline-5-carboxylate reductase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_0339 -4.1 -4.9 Pyruvate dehydrogenase E1 component compare
PP_5346 -4.1 -9.5 pyruvate carboxylase subunit B compare
PP_0965 -4.1 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0164 -4.0 -8.9 conserved protein of unknown function compare
PP_2327 -4.0 -7.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -3.9 -10.2 2-isopropylmalate synthase compare
PP_4696 -3.8 -3.7 Nitrogen regulation protein NR(I) compare
PP_4342 -3.6 -3.4 flagellar synthesis regulator, putative ATPase compare
PP_4058 -3.5 -11.5 1,4-alpha-glucan branching enzyme compare
PP_1075 -3.5 -4.1 glycerol kinase compare
PP_0292 -3.5 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1362 -3.5 -5.7 pyruvate kinase II compare
PP_5717 -3.4 -3.6 conserved protein of unknown function compare
PP_5155 -3.2 -2.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5015 -3.2 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4700 -3.0 -2.0 pantothenate synthetase compare
PP_0420 -2.9 -8.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1468 -2.8 -2.3 Tyrosine recombinase XerD compare
PP_4004 -2.7 -4.7 DNA translocase FtsK compare
PP_1493 -2.6 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2370 -2.4 -2.5 conserved protein of unknown function compare
PP_0393 -2.4 -2.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3649 -2.4 -4.2 Transcriptional regulator, GntR family compare
PP_1022 -2.3 -5.4 glucose 6-phosphate-1-dehydrogenase compare
PP_2414 -2.2 -1.4 conserved exported protein of unknown function compare
PP_1428 -2.2 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_1826 -2.2 -3.2 Hydrolase, isochorismatase family compare
PP_1654 -2.2 -3.7 cysteine synthase B compare
PP_2145 -2.0 -6.2 beta-N-acetylglucosaminidase compare
PP_5348 -2.0 -6.2 Transcriptional regulator, LysR family compare
PP_0291 -2.0 -2.2 conserved protein of unknown function compare
PP_5303 -2.0 -5.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4782 -2.0 -4.8 Phosphomethylpyrimidine kinase compare
PP_5035 -1.9 -5.0 Histidine utilization repressor compare
PP_5217 -1.9 -12.3 Polyphosphate kinase compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_1269 -1.8 -1.9 Universal stress protein family compare
PP_2336 -1.7 -3.2 aconitate hydratase 1 compare
PP_4098 -1.7 -2.4 UvrABC system protein C compare
PP_2328 -1.7 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_1426 -1.7 -8.7 L-aspartate oxidase compare
PP_1994 -1.7 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_1789 -1.6 -5.8 Hydrolase, haloacid dehalogenase-like family compare
PP_4131 -1.6 -5.9 NADH-quinone oxidoreductase subunit N compare
PP_5453 -1.6 -2.8 conserved protein of unknown function compare
PP_5104 -1.6 -5.1 thiazole synthase compare
PP_1076 -1.6 -1.1 aquaglyceroporin compare
PP_4060 -1.6 -9.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1355 -1.6 -12.2 Muropeptide permease AmpG compare
PP_0405 -1.6 -11.1 conserved protein of unknown function compare
PP_4120 -1.6 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1216 -1.6 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4129 -1.5 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4156 -1.5 -2.1 Transcriptional regulator, LysR family compare
PP_4396 -1.5 -5.1 conserved protein of unknown function compare
PP_0434 -1.5 -7.0 Anhydro-N-acetylmuramic acid kinase compare
PP_0986 -1.5 -3.9 aminomethyltransferase compare
PP_3903 -1.5 -2.2 conserved protein of unknown function compare
PP_1783 -1.4 -1.0 dTDP-glucose pyrophosphorylase compare
PP_3603 -1.4 -5.2 Transcriptional regulator, GntR family compare
PP_5090 -1.4 -1.4 putative cell division protein compare
PP_1217 -1.4 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3443 -1.4 -7.8 putative glyceraldehyde-3-phosphate dehydrogenase conserved
PP_4726 -1.3 -1.8 Chaperone protein DnaJ compare
PP_5039 -1.3 -3.7 conserved protein of unknown function compare
PP_2000 -1.3 -1.7 amidophosphoribosyl transferase compare
PP_4699 -1.3 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2337 -1.3 -2.4 aconitate isomerase compare
PP_3359 -1.3 -2.8 putative Hydroxycinnamic acid degradation regulator compare
PP_3790 -1.3 -6.2 diaminopimelate epimerase compare
PP_5227 -1.2 -4.3 diaminopimelate decarboxylase compare
PP_0435 -1.2 -6.6 Peptidase, M23/M37 family compare
PP_4943 -1.2 -2.2 putative Glycosyl transferase compare
PP_1734 -1.2 -2.1 Probable septum site-determining protein MinC compare
PP_0874 -1.2 -3.0 conserved protein of unknown function compare
PP_4895 -1.2 -1.4 tRNA dimethylallyltransferase compare
PP_5054 -1.2 -1.6 glutaredoxin 3 compare
PP_5161 -1.2 -4.9 putative lysophospholipase compare
PP_1353 -1.2 -0.8 conserved membrane protein of unknown function compare
PP_1999 -1.2 -2.4 membrane protein required for colicin V production compare
PP_4121 -1.1 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5652 -1.1 -3.1 conserved protein of unknown function, phage origin compare
PP_4130 -1.1 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4122 -1.1 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3506 -1.1 -2.4 Magnesium chelatase, subunit ChII compare
PP_1233 -1.1 -2.2 sulfurtransferase compare
PP_5313 -1.1 -2.5 DNA-binding protein HU-alpha compare
PP_3726 -1.1 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_5350 -1.1 -1.9 Transcriptional regulator, RpiR family compare
PP_5216 -1.1 -2.0 exopolyphosphatase compare
PP_1736 -1.0 -2.7 conserved protein of unknown function compare
PP_2302 -1.0 -3.4 DNA-binding, ATP-dependent protease compare
PP_4569 -1.0 -3.5 conserved protein of unknown function compare
PP_4480 -1.0 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_1672 -1.0 -3.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1185 -1.0 -3.0 Outer membrane protein H1 compare
PP_5471 -1.0 -2.3 putative response regulator receiver protein compare
PP_0319 -1.0 -0.9 conserved protein of unknown function compare
PP_0848 -1.0 -2.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2137 -1.0 -2.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1629 -1.0 -2.8 Protein RecA compare
PP_0035 -1.0 -1.9 putative bactoprenol-linked glycose transferase compare
PP_2136 -1.0 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2390 -0.9 -5.0 Transcriptional regulator, LysR family compare
PP_0120 -0.9 -4.5 putative zinc ABC transporter compare
PP_5557 -0.9 -1.7 protein of unknown function compare
PP_5203 -0.9 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_2378 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
PP_0261 -0.9 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1589 -0.9 -4.6 uridylyltransferase compare
PP_1215 -0.9 -0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4045 -0.9 -1.9 conserved protein of unknown function compare
PP_1293 -0.9 -1.1 molybdopterin synthase small subunit compare
PP_3248 -0.9 -1.5 Dyp-type peroxidase family protein compare
PP_1664 -0.9 -2.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0916 -0.9 -1.2 Amino acid transporter LysE compare
PP_1790 -0.8 -1.3 putative Acylneuraminate cytidylyltransferase compare
PP_2348 -0.8 -3.5 Sensor histidine kinase compare
PP_1862 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_4356 -0.8 -2.9 Flagellar protein FliO compare
PP_1164 -0.8 -1.1 Transcriptional regulator, LysR family compare
PP_2820 -0.8 -1.6 HTH-type transcriptional regulator nfxB compare
PP_0997 -0.8 -4.4 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_1521 -0.8 -3.0 conserved protein of unknown function compare
PP_1322 -0.8 -1.1 putative Lipoprotein compare
PP_0914 -0.8 -4.6 GGDEF domain protein compare
PP_1387 -0.8 -3.4 Probable HTH-type transcriptional regulator TtgR compare
PP_3731 -0.8 -4.7 Transcriptional regulator, TetR family compare
PP_0362 -0.8 -4.5 Biotin synthase compare
PP_3014 -0.8 -2.1 conserved exported protein of unknown function compare
PP_3314 -0.8 -2.5 Heat shock protein, HSP20 family compare
PP_5047 -0.8 -1.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4695 -0.8 -3.5 Sensory box histidine kinase compare
PP_5441 -0.8 -1.9 protein of unknown function compare
PP_2373 -0.8 -1.9 conserved protein of unknown function compare
PP_4874 -0.8 -0.5 50S ribosomal protein L9 compare
PP_2499 -0.8 -1.2 conserved protein of unknown function compare
PP_5310 -0.8 -2.3 junction-specific ATP-dependent DNA helicase compare
PP_1892 -0.8 -2.7 conserved protein of unknown function compare
PP_3507 -0.8 -4.7 Aerobic cobaltochelatase subunit CobN compare
PP_5028 -0.7 -1.7 proline iminopeptidase compare
PP_5000 -0.7 -0.8 peptidase component of the ATP-dependent HslVU protease compare
PP_4922 -0.7 -4.0 Phosphomethylpyrimidine synthase compare
PP_0119 -0.7 -2.5 putative zinc uptake regulation protein ZUR compare
PP_1128 -0.7 -2.6 OmpA family protein compare
PP_4993 -0.7 -1.9 Glutathione synthetase compare
PP_5027 -0.7 -0.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4980 -0.7 -2.5 ATP-dependent RNA helicase compare
PP_5230 -0.7 -1.2 Tyrosine recombinase XerC compare
PP_2462 -0.7 -2.3 conserved protein of unknown function compare
PP_2070 -0.7 -0.6 Transcriptional regulator, AraC family compare
PP_4768 -0.7 -1.7 Exonuclease compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Glycerol in Pseudomonas putida KT2440

For carbon source Glycerol across organisms