Experiment set12IT052 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1030 -4.0 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1417 -3.9 -9.9 enoyl-CoA hydratase compare
Atu3908 -3.5 -10.2 GntR family transcriptional regulator compare
Atu0040 -3.3 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4166 -3.2 -3.2 UDP-glucose 4-epimerase compare
Atu0399 -3.0 -7.7 dihydroorotase compare
Atu4317 -2.7 -5.2 TetR family transcriptional regulator compare
Atu0331 -2.6 -3.8 sigma-54 modulation protein compare
Atu0026 -2.5 -1.7 hypothetical protein compare
Atu0769 -2.5 -2.4 protoheme IX farnesyltransferase compare
Atu2036 -2.4 -15.0 acetolactate synthase III, large subunit compare
Atu0486 -2.4 -5.3 dihydroorotate dehydrogenase compare
Atu3707 -2.4 -2.4 phosphoserine aminotransferase compare
Atu2183 -2.4 -9.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu6098 -2.3 -1.5 transcriptional regulator, HTH family compare
Atu4616 -2.3 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu1810 -2.3 -1.7 hypothetical protein compare
Atu8191 -2.2 -2.9 hypothetical protein compare
Atu1588 -2.2 -9.8 homoserine dehydrogenase compare
Atu0043 -2.2 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3763 -2.2 -2.0 hypothetical protein compare
Atu0030 -2.1 -2.2 phosphocarrier protein HPr compare
Atu1364 -2.1 -7.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3754 -2.1 -7.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4072 -2.0 -2.9 nodulation protein N compare
Atu2289 -2.0 -13.4 anthranilate synthase component I and II compare
Atu1307 -1.9 -4.8 dihydroorotase compare
Atu0298 -1.9 -7.6 orotidine 5 compare
Atu1750 -1.9 -3.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu3353 -1.8 -9.4 mannose-1-phosphate guanylyltransferase compare
Atu3706 -1.8 -7.2 D-3-phosphoglycerate dehydrogenase compare
Atu4614 -1.8 -5.9 glycosyltransferase compare
Atu0041 -1.8 -2.4 glutamine amidotransferase compare
Atu0537 -1.8 -6.6 histidinol dehydrogenase compare
Atu2684 -1.8 -2.4 hypothetical protein compare
Atu2790 -1.7 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu4618 -1.7 -10.4 dTDP-rhamnose-3,5-epimerase compare
Atu1141 -1.7 -5.1 Phosphoribosylglycinamide synthetase compare
Atu1845 -1.7 -4.7 phosphoribosylformylglycinamidine synthase I compare
Atu4617 -1.7 -9.0 dTDP-D-glucose-4,6-dehydratase compare
Atu2040 -1.7 -4.0 phosphoserine phosphatase compare
Atu0029 -1.7 -5.6 S-adenosylhomocysteine hydrolase compare
Atu1140 -1.7 -5.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1705 -1.7 -7.2 SEC-independent protein translocase protein compare
Atu0099 -1.6 -10.1 prephenate dehydratase compare
Atu1308 -1.6 -4.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1850 -1.6 -3.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2439 -1.6 -1.8 hypothetical protein compare
Atu1688 -1.5 -6.2 indole-3-glycerol-phosphate synthase compare
Atu2718 -1.5 -6.3 homoserine O-succinyltransferase compare
Atu0977 -1.5 -3.7 serine protease DO-like protease compare
Atu2791 -1.5 -8.2 3-isopropylmalate dehydrogenase compare
Atu0149 -1.5 -2.8 enoyl-(acyl-carrier-protein) reductase compare
Atu2554 -1.5 -2.6 lysyl-tRNA synthetase compare
Atu4217 -1.5 -1.7 TetR family transcriptional regulator compare
Atu2709 -1.5 -10.5 3-isopropylmalate dehydratase, large subunit compare
Atu0679 -1.5 -4.6 ATP phosphoribosyltransferase compare
Atu1205 -1.4 -9.5 threonine dehydratase compare
Atu0678 -1.4 -4.4 histidyl-tRNA synthetase compare
Atu1902 -1.4 -4.9 transketolase compare
Atu3755 -1.4 -5.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0039 -1.4 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0017 -1.4 -3.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0038 -1.4 -3.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2238 -1.4 -5.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2801 -1.4 -4.7 precorrin-2 C20 methyltransferase compare
Atu1075 -1.4 -5.7 amidophosphoribosyltransferase compare
Atu0101 -1.4 -2.6 cytochrome c compare
Atu1844 -1.4 -2.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0647 -1.4 -3.3 phosphoribosylamine--glycine ligase compare
Atu0784 -1.3 -2.5 hypothetical protein compare
Atu1446 -1.3 -2.0 two component response regulator compare
Atu0971 -1.3 -3.1 two component sensor kinase compare
Atu3311 -1.3 -9.3 phosphomannose isomerase compare
Atu1687 -1.3 -7.2 anthranilate phosphoribosyltransferase compare
Atu4711 -1.3 -7.0 two component sensor kinase compare
Atu0062 -1.3 -5.7 transcriptional regulator, ROK family compare
Atu2264 -1.3 -7.3 2-isopropylmalate synthase compare
Atu3750 -1.3 -3.0 thiamine-phosphate pyrophosphorylase compare
Atu2728 -1.3 -3.1 beta (1-->2) glucan export ATP-binding protein compare
Atu3012 -1.2 -2.1 hypothetical protein compare
Atu1468 -1.2 -6.9 hypothetical protein compare
Atu1620 -1.2 -7.5 triosephosphate isomerase compare
Atu2555 -1.2 -2.7 L-lysine 2,3-aminomutase compare
Atu4613 -1.2 -7.7 glycosyltransferase compare
Atu0432 -1.2 -4.8 O-succinylhomoserine sulfhydrylase compare
Atu2640 -1.2 -4.7 hypothetical protein compare
Atu1339 -1.2 -3.0 ribonuclease E compare
Atu2831 -1.1 -4.4 glucose inhibited division protein A compare
Atu1028 -1.1 -2.4 hypothetical protein compare
Atu1644 -1.1 -4.1 hypothetical protein compare
Atu2650 -1.1 -5.8 glycerol-3-phosphate dehydrogenase compare
Atu2237 -1.1 -3.7 cytochrome c1 compare
Atu2239 -1.1 -3.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4615 -1.1 -5.7 glucose-1-phosphate thymidylyltransferase compare
Atu1354 -1.1 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3017 -1.1 -1.3 phosphoglyceromutase compare
Atu2800 -1.1 -3.9 precorrin-3B C17-methyltransferase compare
Atu1537 -1.1 -6.9 cytochrome-c oxidase, FixN chain compare
Atu1535 -1.1 -2.3 cytochrome c oxidase, FixQ chain compare
Atu4610 -1.1 -6.4 sugar nucleotide epimerase/dehydratase compare
Atu1646 -1.0 -3.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1536 -1.0 -5.6 cytochrome C oxidase, FixO chain compare
Atu2113 -1.0 -3.0 N-acetylmuramoyl-L-alanine amidase compare
Atu3732 -1.0 -7.1 hemolysin compare
Atu0184 -1.0 -1.9 glucokinase compare
Atu2207 -1.0 -2.7 two component sensor kinase compare
Atu3598 -1.0 -2.1 thiol:disulfide interchange protein compare
Atu1528 -1.0 -6.5 nitrogen fixation protein FixI compare
Atu3730 -1.0 -1.2 hypothetical protein compare
Atu1527 -1.0 -3.0 nitrogen fixation protein FixS compare
Atu0093 -1.0 -3.1 Recombination protein compare
Atu3469 -1.0 -2.5 phosphoglyceromutase compare
Atu4773 -1.0 -1.6 two component response regulator compare
Atu0031 -1.0 -1.2 PTS system, IIA component compare
Atu0401 -1.0 -3.7 fructokinase compare
Atu1513 -0.9 -3.5 ABC excinuclease subunit A compare
Atu1534 -0.9 -4.2 cytochrome-c oxidase, FixP chain compare
Atu1359 -0.9 -1.0 dnaK deletion suppressor protein compare
Atu2073 -0.9 -2.2 membrane protein compare
Atu3740 -0.9 -4.5 fructose bisphosphate aldolase compare
Atu2433 -0.9 -1.2 hypothetical protein compare
Atu0513 -0.9 -4.7 hypothetical protein compare
Atu4884 -0.9 -2.5 hypothetical protein compare
Atu0895 -0.9 -1.7 ABC transporter, substrate binding protein compare
Atu1645 -0.9 -4.4 ABC transporter, substrate binding protein compare
Atu1904 -0.9 -1.7 transcriptional regulator compare
Atu1580 -0.9 -5.8 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu4346 -0.9 -3.4 hypothetical protein compare
Atu1074 -0.9 -6.8 NAD/NADP dependent oxidoreductase compare
Atu0976 -0.9 -1.7 cycL protein compare
Atu1529 -0.9 -4.7 nitrogen fixation protein FixH compare
Atu0434 -0.9 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0421 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu0346 -0.9 -2.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1774 -0.9 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu4890 -0.8 -1.5 IS426 transposase compare
Atu4538 -0.8 -5.6 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu0051 -0.8 -3.7 two component sensor kinase compare
Atu1530 -0.8 -5.9 nitrogen fixation protein FixG compare
Atu0923 -0.8 -5.0 hypothetical protein compare
Atu0189 -0.8 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu3121 -0.8 -1.0 cold shock protein compare
Atu3014 -0.8 -1.7 hypothetical protein compare
Atu0876 -0.8 -1.1 superoxide dismutase compare
Atu0073 -0.8 -3.8 recF-like protein compare
Atu1647 -0.8 -5.2 ABC transporter, membrane spanning protein compare
Atu1677 -0.8 -2.7 queuine tRNA-ribosyltransferase compare
Atu6189 -0.8 -1.2 protein secretion chaperone compare
Atu2057 -0.8 -2.0 DNA helicase II compare
Atu4133 -0.8 -2.1 hypothetical protein compare
Atu2052 -0.8 -2.6 hypothetical protein compare
Atu0973 -0.8 -5.0 cycH protein compare
Atu2522 -0.8 -5.0 agrobacterium chromosomal virulence protein B compare
Atu3608 -0.8 -2.8 hypothetical protein compare
Atu0153 -0.8 -3.0 transcriptional regulator, Fur family compare
Atu8202 -0.8 -3.4 hypothetical protein compare
Atu1173 -0.8 -5.4 MFS permease compare
Atu2217 -0.8 -3.3 hypothetical protein compare
Atu4418 -0.8 -2.8 glutaryl-CoA dehydrogenase compare
Atu2125 -0.8 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu8167 -0.8 -5.0 putative transmembrane protein compare
Atu0400 -0.7 -1.7 orotate phosphoribosyltransferase compare
Atu1039 -0.7 -3.1 DNA repair protein RecO compare
Atu4888 -0.7 -2.7 hypothetical protein compare
Atu3963 -0.7 -4.3 GntR family transcriptional regulator compare
Atu3572 -0.7 -4.5 transcriptional regulator compare
Atu3579 -0.7 -2.0 lactoylglutathione lyase compare
Atu2115 -0.7 -4.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0188 -0.7 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu3219 -0.7 -4.9 dihydroxy-acid dehydratase compare
Atu1780 -0.7 -5.1 ATP-dependent DNA helicase compare
Atu4148 -0.7 -3.8 UDP-glucuronic acid epimerase compare
Atu0507 -0.7 -3.5 potassium efflux system protein compare
Atu1387 -0.7 -1.6 transcriptional regulator, GntR family compare
Atu1602 -0.7 -3.1 transcriptional activator, Crp family compare
Atu2127 -0.7 -3.7 L-carnitine dehydratase compare
Atu0703 -0.7 -1.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0660 -0.7 -4.3 hydrolase compare
Atu4364 -0.7 -4.1 LacI family transcriptional regulator compare
Atu0499 -0.7 -3.2 hypothetical protein compare
Atu4541 -0.7 -2.9 carboxymuconolactone decarboxylase compare
Atu0837 -0.7 -3.1 transcriptional regulator, MarR family compare
Atu1874 -0.7 -2.1 RecA protein compare
Atu1182 -0.7 -1.7 hypothetical protein compare
Atu0050 -0.7 -2.6 two component response regulator compare
Atu0846 -0.7 -1.4 transcriptional regulator, MarR family compare
Atu4446 -0.7 -2.9 hypothetical protein compare
Atu2832 -0.7 -1.8 tRNA modification GTPase compare
Atu0106 -0.7 -3.3 cold shock protein compare
Atu2802 -0.7 -4.2 precorrin-8X methylmutase compare
Atu4881 -0.7 -2.6 hypothetical protein compare
Atu3885 -0.7 -3.6 inositol monophosphatase compare
Atu3013 -0.7 -2.5 hypothetical protein compare
Atu4290 -0.7 -1.0 hypothetical protein compare
Atu2799 -0.7 -2.3 precorrin-6x reductase compare
Atu3604 -0.7 -1.8 hypoxanthine phosphoribosyltransferase compare
Atu0361 -0.7 -1.9 transcriptional regulator compare
Atu3739 -0.6 -1.5 phosphoglycerate kinase compare
Atu0659 -0.6 -3.0 NTP pyrophosphohydrolase, MutT family compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms