Experiment set12IT051 for Pseudomonas putida KT2440

Compare to:

Delta-Nonalactone carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_5109 -4.8 -5.7 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_0997 -4.5 -8.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_4164 -4.5 -6.1 Alpha/beta hydrolase compare
PP_0767 -4.0 -10.0 Transcriptional regulator, LuxR family compare
PP_0988 -3.9 -12.0 glycine dehydrogenase compare
PP_2436 -3.8 -7.4 Transcriptional regulator, LysR family compare
PP_5057 -3.4 -8.3 Peptidase, M23/M37 family compare
PP_0370 -3.4 -15.6 Acyl-CoA dehydrogenase family protein compare
PP_4948 -3.2 -9.2 Acyl-CoA dehydrogenase family protein compare
PP_3925 -2.9 -12.6 conserved protein of unknown function compare
PP_3300 -2.1 -8.7 Transcriptional regulator, tetR family compare
PP_0763 -2.1 -8.5 Medium-chain-fatty-acid CoA ligase compare
PP_5179 -2.0 -5.3 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_5178 -2.0 -7.6 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_3754 -2.0 -5.4 Beta-ketothiolase BktB compare
PP_0428 -2.0 -6.9 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_0413 -1.9 -9.3 Polyamine ABC transporter, permease protein compare
PP_0680 -1.9 -8.6 ATP-dependent protease-like protein compare
PP_2019 -1.8 -10.4 adhesin-associated MmpL efflux pump (from data) compare
PP_0887 -1.7 -5.8 Sensor histidine kinase compare
PP_4477 -1.7 -5.5 N-succinylarginine dihydrolase compare
PP_2013 -1.5 -5.2 conserved protein of unknown function compare
PP_3755 -1.5 -5.1 3-hydroxybutyryl-CoA dehydrogenase compare
PP_4840 -1.5 -5.9 D-alanine, beta-alanine, D-serine, glycine permease compare
PP_5160 -1.4 -5.9 conserved exported protein of unknown function compare
PP_0766 -1.4 -7.6 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_1993 -1.3 -6.5 putative motility protein fimV compare
PP_4277 -1.3 -5.3 Transcriptional regulator, GntR family compare
PP_1351 -1.1 -5.0 putative 2-dehydropantoate 2-reductase compare
PP_5158 -1.0 -5.2 conserved protein of unknown function compare
PP_0088 +1.0 7.0 putative alkanal monooxygenase compare
PP_4574 +1.1 5.7 conserved protein of unknown function compare
PP_0133 +1.1 6.7 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_1621 +1.2 6.1 Protein-L-isoaspartate O-methyltransferase compare
PP_0137 +1.3 9.6 glutamate/aspartate-proton DAACS transporter compare
PP_5270 +1.3 7.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1119 +1.3 6.3 conserved protein of unknown function compare
PP_0118 +1.4 6.7 zinc import ATP-binding protein compare
PP_1917 +1.5 6.0 4-amino-4-deoxychorismate lyase compare
PP_1761 +1.6 12.3 diguanylate cyclase with phosphodiesterase domain compare
PP_0058 +1.6 14.0 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0878 +1.6 7.5 dipeptide ABC transporter, binding subunit compare
PP_0599 +1.6 13.1 paraquat-inducible protein B compare
PP_4629 +1.6 6.7 Sensory box protein compare
PP_4933 +1.7 10.6 conserved protein of unknown function compare
PP_0598 +1.8 12.0 paraquat-inducible protein A compare
PP_5380 +1.8 15.9 copper resistance protein A compare
PP_1204 +1.8 8.6 putative Lipoprotein compare
PP_5745 +1.8 11.2 paraquat-inducible protein A compare
PP_4148 +1.9 11.4 putative inner membrane ABC transporter permease protein compare
PP_2683 +2.0 6.7 putative sensory box histidine kinase/response regulator compare
PP_2666 +2.1 11.7 conserved exported protein of unknown function compare
PP_1238 +2.1 8.7 putative Lipoprotein compare
PP_5358 +2.2 6.9 conserved protein of unknown function compare
PP_1453 +2.2 16.6 putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity compare
PP_2664 +2.3 15.6 putative hybrid sensor and regulator, histidine kinase compare
PP_4149 +2.4 15.3 putative inner membrane ABC transporter permease protein compare
PP_2148 +2.5 15.3 transcription-repair coupling factor compare
PP_2662 +2.5 20.2 conserved exported protein of unknown function compare
PP_4147 +2.5 16.8 microcin C transporter - periplasmic binding protein compare
PP_1206 +2.5 14.8 basic-amino-acid specific porin OprD compare
PP_2082 +2.6 17.6 phosphoenolpyruvate synthetase compare
PP_4150 +2.6 15.0 microcin C transporter - ATP binding subunit compare
PP_2663 +2.8 14.0 conserved protein of unknown function compare
PP_1074 +5.1 12.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4762 +9.3 32.5 Acyl-CoA thioesterase II compare


Specific phenotypes for carbon source Delta-Nonalactone across organisms