Experiment set12IT051 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.4 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1417 -3.5 -11.0 enoyl-CoA hydratase compare
Atu0041 -3.3 -3.6 glutamine amidotransferase compare
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3908 -3.0 -9.6 GntR family transcriptional regulator compare
Atu0399 -2.9 -8.2 dihydroorotase compare
Atu0039 -2.9 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0331 -2.6 -3.3 sigma-54 modulation protein compare
Atu3730 -2.6 -1.7 hypothetical protein compare
Atu3707 -2.5 -3.5 phosphoserine aminotransferase compare
Atu3754 -2.5 -4.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -2.4 -6.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu6098 -2.3 -1.6 transcriptional regulator, HTH family compare
Atu3763 -2.2 -2.1 hypothetical protein compare
Atu0400 -2.1 -3.4 orotate phosphoribosyltransferase compare
Atu2125 -2.0 -1.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1359 -2.0 -1.6 dnaK deletion suppressor protein compare
Atu8191 -2.0 -3.0 hypothetical protein compare
Atu0486 -2.0 -5.8 dihydroorotate dehydrogenase compare
Atu2728 -2.0 -4.1 beta (1-->2) glucan export ATP-binding protein compare
Atu2036 -1.9 -11.9 acetolactate synthase III, large subunit compare
Atu0769 -1.9 -2.6 protoheme IX farnesyltransferase compare
Atu0030 -1.9 -2.2 phosphocarrier protein HPr compare
Atu3706 -1.9 -6.8 D-3-phosphoglycerate dehydrogenase compare
Atu5430 -1.8 -2.1 hypothetical protein compare
Atu0298 -1.8 -6.1 orotidine 5 compare
Atu2554 -1.8 -3.6 lysyl-tRNA synthetase compare
Atu3755 -1.8 -6.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2057 -1.8 -2.9 DNA helicase II compare
Atu2289 -1.8 -12.2 anthranilate synthase component I and II compare
Atu4317 -1.8 -2.2 TetR family transcriptional regulator compare
Atu1810 -1.8 -0.9 hypothetical protein compare
Atu1588 -1.8 -7.4 homoserine dehydrogenase compare
Atu4616 -1.7 -2.2 dTDP-4-dehydrorhamnose reductase compare
Atu0099 -1.7 -6.8 prephenate dehydratase compare
Atu4072 -1.7 -2.4 nodulation protein N compare
Atu1364 -1.7 -5.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0361 -1.6 -2.6 transcriptional regulator compare
Atu2040 -1.6 -3.6 phosphoserine phosphatase compare
Atu0354 -1.6 -2.8 ferric uptake regulator compare
Atu0679 -1.5 -4.8 ATP phosphoribosyltransferase compare
Atu1141 -1.5 -7.7 Phosphoribosylglycinamide synthetase compare
Atu4166 -1.5 -2.5 UDP-glucose 4-epimerase compare
Atu1308 -1.5 -5.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1075 -1.5 -5.7 amidophosphoribosyltransferase compare
Atu1688 -1.5 -7.1 indole-3-glycerol-phosphate synthase compare
Atu1470 -1.4 -1.8 Camphor resistance protein compare
Atu0031 -1.4 -1.6 PTS system, IIA component compare
Atu1644 -1.4 -3.9 hypothetical protein compare
Atu3598 -1.4 -2.9 thiol:disulfide interchange protein compare
Atu2183 -1.4 -7.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2207 -1.4 -3.1 two component sensor kinase compare
Atu0678 -1.4 -5.2 histidyl-tRNA synthetase compare
Atu0346 -1.3 -1.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1845 -1.3 -3.3 phosphoribosylformylglycinamidine synthase I compare
Atu4346 -1.3 -5.4 hypothetical protein compare
Atu4614 -1.3 -6.2 glycosyltransferase compare
Atu4618 -1.3 -8.3 dTDP-rhamnose-3,5-epimerase compare
Atu2718 -1.3 -4.8 homoserine O-succinyltransferase compare
Atu1874 -1.3 -2.7 RecA protein compare
Atu0977 -1.3 -3.3 serine protease DO-like protease compare
Atu0086 -1.3 -1.3 ribosome-binding factor A compare
Atu1902 -1.3 -4.2 transketolase compare
Atu1844 -1.3 -2.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2791 -1.3 -6.6 3-isopropylmalate dehydrogenase compare
Atu3732 -1.3 -8.1 hemolysin compare
Atu0647 -1.3 -5.1 phosphoribosylamine--glycine ligase compare
Atu0029 -1.3 -4.2 S-adenosylhomocysteine hydrolase compare
Atu3353 -1.3 -8.3 mannose-1-phosphate guanylyltransferase compare
Atu1307 -1.3 -3.2 dihydroorotase compare
Atu4617 -1.3 -9.1 dTDP-D-glucose-4,6-dehydratase compare
Atu1850 -1.2 -2.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2204 -1.2 -2.2 hypothetical protein compare
Atu2237 -1.2 -4.7 cytochrome c1 compare
Atu0062 -1.2 -7.3 transcriptional regulator, ROK family compare
Atu1581 -1.2 -2.7 hypothetical protein compare
Atu3740 -1.2 -7.3 fructose bisphosphate aldolase compare
Atu1750 -1.2 -4.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0784 -1.2 -3.3 hypothetical protein compare
Atu4615 -1.2 -7.5 glucose-1-phosphate thymidylyltransferase compare
Atu1205 -1.2 -8.6 threonine dehydratase compare
Atu1687 -1.1 -5.3 anthranilate phosphoribosyltransferase compare
Atu0201 -1.1 -1.5 hypothetical protein compare
Atu4217 -1.1 -1.5 TetR family transcriptional regulator compare
Atu1620 -1.1 -7.5 triosephosphate isomerase compare
Atu0971 -1.1 -3.1 two component sensor kinase compare
Atu3311 -1.1 -8.1 phosphomannose isomerase compare
Atu2798 -1.1 -3.0 precorrin-6y methyltransferase compare
Atu1513 -1.1 -3.9 ABC excinuclease subunit A compare
Atu3008 -1.1 -1.0 hypothetical protein compare
Atu0038 -1.1 -4.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -1.1 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu2709 -1.1 -7.1 3-isopropylmalate dehydratase, large subunit compare
Atu8138 -1.1 -1.9 hypothetical protein compare
Atu2193 -1.1 -1.1 hypothetical protein compare
Atu0432 -1.0 -5.6 O-succinylhomoserine sulfhydrylase compare
Atu2264 -1.0 -6.2 2-isopropylmalate synthase compare
Atu2650 -1.0 -6.6 glycerol-3-phosphate dehydrogenase compare
Atu4610 -1.0 -6.2 sugar nucleotide epimerase/dehydratase compare
Atu1645 -1.0 -5.3 ABC transporter, substrate binding protein compare
Atu3739 -1.0 -2.7 phosphoglycerate kinase compare
Atu1163 -1.0 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0537 -1.0 -3.5 histidinol dehydrogenase compare
Atu2522 -1.0 -7.5 agrobacterium chromosomal virulence protein B compare
Atu2616 -1.0 -4.6 hypothetical protein compare
Atu0976 -1.0 -1.8 cycL protein compare
Atu3727 -1.0 -3.4 hypothetical protein compare
Atu4773 -1.0 -1.1 two component response regulator compare
Atu2790 -1.0 -1.9 3-isopropylmalate dehydratase, small subunit compare
Atu2555 -0.9 -2.1 L-lysine 2,3-aminomutase compare
Atu2640 -0.9 -2.6 hypothetical protein compare
Atu8167 -0.9 -5.9 putative transmembrane protein compare
Atu0723 -0.9 -1.3 FAD dependent oxidoreductase compare
Atu0036 -0.9 -2.2 hypothetical protein compare
Atu2684 -0.9 -1.3 hypothetical protein compare
Atu0941 -0.9 -0.9 hypothetical protein compare
Atu8052 -0.9 -1.5 hypothetical protein compare
Atu0101 -0.9 -3.9 cytochrome c compare
Atu1241 -0.9 -3.0 hypothetical protein compare
Atu1705 -0.9 -3.9 SEC-independent protein translocase protein compare
Atu3750 -0.9 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu0184 -0.9 -1.9 glucokinase compare
Atu1646 -0.9 -4.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0876 -0.9 -1.4 superoxide dismutase compare
Atu2113 -0.9 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu2439 -0.9 -1.0 hypothetical protein compare
Atu0269 -0.9 -2.7 exodeoxyribonuclease VII large subunit compare
Atu0662 -0.9 -3.7 transcriptional regulator, GntR family compare
Atu1677 -0.9 -2.6 queuine tRNA-ribosyltransferase compare
Atu4541 -0.8 -3.8 carboxymuconolactone decarboxylase compare
Atu2238 -0.8 -5.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3963 -0.8 -3.8 GntR family transcriptional regulator compare
Atu4613 -0.8 -6.1 glycosyltransferase compare
Atu1468 -0.8 -4.3 hypothetical protein compare
Atu0499 -0.8 -4.0 hypothetical protein compare
Atu2376 -0.8 -2.0 hypothetical protein compare
Atu1528 -0.8 -5.8 nitrogen fixation protein FixI compare
Atu3219 -0.8 -5.5 dihydroxy-acid dehydratase compare
Atu4418 -0.8 -3.8 glutaryl-CoA dehydrogenase compare
Atu0845 -0.8 -3.8 hypothetical protein compare
Atu0050 -0.8 -2.5 two component response regulator compare
Atu2073 -0.8 -3.7 membrane protein compare
Atu3009 -0.8 -1.1 exopolysaccharide production protein compare
Atu1647 -0.8 -4.2 ABC transporter, membrane spanning protein compare
Atu0189 -0.8 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0051 -0.8 -3.5 two component sensor kinase compare
Atu0017 -0.7 -2.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2807 -0.7 -3.9 cob(I)alamin adenosyltransferase compare
Atu2832 -0.7 -2.5 tRNA modification GTPase compare
Atu0153 -0.7 -2.6 transcriptional regulator, Fur family compare
Atu4538 -0.7 -5.0 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu6036 -0.7 -1.1 entry-exclusion protein compare
Atu1535 -0.7 -2.5 cytochrome c oxidase, FixQ chain compare
Atu2239 -0.7 -1.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2127 -0.7 -3.2 L-carnitine dehydratase compare
Atu0893 -0.7 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu1536 -0.7 -3.0 cytochrome C oxidase, FixO chain compare
Atu3485 -0.7 -4.8 short chain dehydrogenase compare
Atu1602 -0.7 -3.0 transcriptional activator, Crp family compare
Atu1074 -0.7 -5.1 NAD/NADP dependent oxidoreductase compare
Atu1380 -0.7 -4.2 zinc metallopeptidase compare
Atu3773 -0.7 -2.3 hypothetical protein compare
Atu1173 -0.7 -4.2 MFS permease compare
Atu2347 -0.7 -3.5 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu1592 -0.7 -2.8 hypothetical protein compare
Atu3744 -0.7 -4.6 ABC transporter permease compare
Atu2442 -0.7 -1.8 hypothetical protein compare
Atu1344 -0.7 -1.4 hypothetical protein compare
Atu3486 -0.7 -2.1 DeoR family transcriptional regulator compare
Atu1447 -0.7 -1.8 two component sensor kinase compare
Atu0422 -0.7 -1.4 ABC transporter, membrane spanning protein compare
Atu2831 -0.7 -3.4 glucose inhibited division protein A compare
Atu3788 -0.7 -3.3 potassium-transporting ATPase subunit C compare
Atu2052 -0.7 -2.8 hypothetical protein compare
Atu2801 -0.7 -2.3 precorrin-2 C20 methyltransferase compare
Atu4148 -0.7 -2.7 UDP-glucuronic acid epimerase compare
Atu3020 -0.7 -3.7 GntR family transcriptional regulator compare
Atu4890 -0.7 -1.3 IS426 transposase compare
Atu1039 -0.7 -2.3 DNA repair protein RecO compare
Atu4887 -0.6 -3.3 hypothetical protein compare
Atu0025 -0.6 -1.7 hypothetical protein compare
Atu0585 -0.6 -2.3 hypothetical protein compare
Atu4446 -0.6 -3.5 hypothetical protein compare
Atu4099 -0.6 -3.3 hypothetical protein compare
Atu8118 -0.6 -3.2 putative universal stress protein compare
Atu0846 -0.6 -2.1 transcriptional regulator, MarR family compare
Atu1176 -0.6 -2.6 hypothetical protein compare
Atu1579 -0.6 -4.3 ABC transporter, membrane spanning protein (amino acid) compare
Atu2184 -0.6 -2.6 transcriptional regulator, AsnC family compare
Atu1495 -0.6 -1.5 hypothetical protein compare
Atu0142 -0.6 -1.0 cytochrome o ubiquinol oxidase subunit II compare
Atu2802 -0.6 -3.1 precorrin-8X methylmutase compare
Atu0923 -0.6 -2.7 hypothetical protein compare
Atu1530 -0.6 -4.5 nitrogen fixation protein FixG compare
Atu5125 -0.6 -2.5 GntR family transcriptional regulator compare
Atu0225 -0.6 -0.7 hypothetical protein compare
Atu0401 -0.6 -3.6 fructokinase compare
Atu4641 -0.6 -2.2 LysR family transcriptional regulator compare
Atu2155 -0.6 -5.0 methionine synthase compare
Atu1619 -0.6 -1.0 protein-export membrane protein SECG compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms