Experiment set12IT049 for Pseudomonas putida KT2440

Compare to:

Delta-Dodecalactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.2 -5.0 Indole-3-glycerol phosphate synthase compare
PP_0967 -7.1 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -6.4 -9.8 Histidinol dehydrogenase compare
PP_2903 -6.2 -4.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4678 -6.0 -14.6 Ketol-acid reductoisomerase compare
PP_3511 -5.9 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_5097 -5.8 -13.5 homoserine O-acetyltransferase compare
PP_0766 -5.7 -17.0 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_2137 -5.5 -3.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4680 -5.4 -14.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -5.3 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -5.3 -9.5 methionine biosynthesis protein MetW compare
PP_0417 -5.3 -20.0 Anthranilate synthase component 1 compare
PP_4679 -5.2 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0765 -5.2 -19.8 putative adhesin (DUF1302) (from data) compare
PP_4890 -5.2 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_2433 -5.2 -4.5 conserved protein of unknown function compare
PP_0406 -5.2 -7.8 Nucleotidyltransferase family protein compare
PP_0767 -5.2 -12.4 Transcriptional regulator, LuxR family compare
PP_0293 -5.1 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4116 -5.1 -12.7 isocitrate lyase compare
PP_4817 -5.1 -6.0 MaoC domain protein compare
PP_1988 -5.0 -9.2 3-isopropylmalate dehydrogenase compare
PP_5014 -5.0 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0356 -5.0 -10.1 malate synthase G compare
PP_1986 -4.9 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_5015 -4.9 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2136 -4.7 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1079 -4.7 -7.2 Ornithine carbamoyltransferase compare
PP_1985 -4.7 -7.8 3-isopropylmalate dehydratase large subunit compare
PP_0965 -4.6 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -4.6 -9.7 Argininosuccinate synthase compare
PP_2019 -4.5 -15.1 adhesin-associated MmpL efflux pump (from data) compare
PP_1898 -4.5 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2018 -4.5 -6.9 adhesin-associated BNR repeat protein (from data) compare
PP_0083 -4.4 -4.3 tryptophan synthase beta chain compare
PP_5289 -4.4 -5.2 Acetylglutamate kinase compare
PP_0164 -4.4 -9.8 conserved protein of unknown function compare
PP_4699 -4.4 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4723 -4.3 -12.2 Carbamoyl-phosphate synthase large chain compare
PP_5185 -4.3 -7.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -4.3 -7.8 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.3 -3.0 tryptophan synthase alpha chain compare
PP_0368 -4.3 -11.7 putative Acyl-CoA dehydrogenase compare
PP_0691 -4.3 -5.8 Glutamate 5-kinase compare
PP_3999 -4.2 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2168 -4.2 -11.2 Transaldolase compare
PP_4122 -4.2 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0434 -4.2 -8.9 Anhydro-N-acetylmuramic acid kinase compare
PP_4940 -4.1 -9.6 Putative glycosyltransferase compare
PP_4364 -4.1 -6.3 putative Anti-sigma F factor antagonist compare
PP_3821 -3.9 -11.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5128 -3.9 -6.7 Dihydroxy-acid dehydratase compare
PP_0184 -3.8 -4.6 Argininosuccinate lyase compare
PP_5095 -3.8 -2.6 pyrroline-5-carboxylate reductase compare
PP_1384 -3.8 -7.2 Probable efflux pump outer membrane protein TtgC compare
PP_4724 -3.8 -5.3 Carbamoyl-phosphate synthase small chain compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_5007 -3.7 -3.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3484 -3.7 -5.7 Response regulator receiver protein compare
PP_1468 -3.6 -3.2 Tyrosine recombinase XerD compare
PP_2145 -3.6 -9.3 beta-N-acetylglucosaminidase compare
PP_0289 -3.6 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0290 -3.6 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0292 -3.6 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2001 -3.5 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_1355 -3.5 -15.8 Muropeptide permease AmpG compare
PP_2327 -3.5 -6.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4909 -3.5 -8.9 phosphoserine phosphatase compare
PP_3105 -3.4 -2.5 conserved membrane protein of unknown function compare
PP_4994 -3.4 -5.2 conserved protein of unknown function compare
PP_4058 -3.4 -12.0 1,4-alpha-glucan branching enzyme compare
PP_4696 -3.4 -2.3 Nitrogen regulation protein NR(I) compare
PP_0405 -3.3 -13.8 conserved protein of unknown function compare
PP_4120 -3.3 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_5659 -3.3 -2.9 protein of unknown function compare
PP_5155 -3.3 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1385 -3.2 -13.2 Probable efflux pump membrane transporter TtgB compare
PP_2868 -3.2 -6.6 Transcriptional regulator, Cro/CI family compare
PP_0420 -3.2 -7.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3649 -3.1 -5.2 Transcriptional regulator, GntR family compare
PP_4902 -3.0 -2.1 Oligoribonuclease compare
PP_1216 -3.0 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1386 -3.0 -6.2 Probable efflux pump periplasmic linker TtgA compare
PP_4549 -3.0 -10.5 long-chain-fatty-acid/CoA ligase compare
PP_4296 -2.9 -2.2 conserved exported protein of unknown function compare
PP_4131 -2.9 -5.9 NADH-quinone oxidoreductase subunit N compare
PP_1181 -2.9 -4.2 DNA-binding response regulator compare
PP_2375 -2.9 -13.6 cobalamin-dependent methionine synthase compare
PP_1231 -2.9 -8.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4129 -2.8 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4695 -2.8 -10.8 Sensory box histidine kinase compare
PP_2806 -2.8 -6.4 Transcriptional regulator, TetR family compare
PP_5203 -2.8 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_5313 -2.8 -4.2 DNA-binding protein HU-alpha compare
PP_4799 -2.8 -3.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4126 -2.6 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_0787 -2.6 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4943 -2.6 -2.5 putative Glycosyl transferase compare
PP_1025 -2.6 -8.2 2-isopropylmalate synthase compare
PP_0901 -2.6 -9.9 DNA-binding response regulator compare
PP_4342 -2.6 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_1941 -2.5 -5.4 conserved protein of unknown function compare
PP_4268 -2.5 -1.4 nucleoid-associated broad specificity regulator compare
PP_4130 -2.5 -5.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4124 -2.5 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_4008 -2.4 -7.8 ATP-dependent serine protease compare
PP_5347 -2.4 -9.9 pyruvate carboxylase subunit A compare
PP_0291 -2.3 -2.4 conserved protein of unknown function compare
PP_2402 -2.3 -3.3 putative Sensor histidine kinase compare
PP_4532 -2.3 -2.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4700 -2.2 -1.5 pantothenate synthetase compare
PP_2414 -2.2 -1.4 conserved exported protein of unknown function compare
PP_3102 -2.2 -4.6 conserved protein of unknown function compare
PP_0435 -2.2 -6.7 Peptidase, M23/M37 family compare
PP_0962 -2.2 -2.9 toluene-tolerance protein compare
PP_4121 -2.2 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4977 -2.1 -7.7 5,10-methylenetetrahydrofolate reductase compare
PP_2371 -2.1 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_2370 -2.1 -2.9 conserved protein of unknown function compare
PP_0902 -2.0 -7.9 integral membrane sensor signal transduction histidine kinase compare
PP_5346 -2.0 -7.6 pyruvate carboxylase subunit B compare
PP_3662 -2.0 -8.7 conserved protein of unknown function compare
PP_0914 -2.0 -7.6 GGDEF domain protein compare
PP_0958 -2.0 -4.7 phospholipid ABC transporter ATP-binding subunit compare
PP_3924 -2.0 -3.4 conserved protein of unknown function compare
PP_0986 -2.0 -4.4 aminomethyltransferase compare
PP_4936 -1.9 -5.5 O-antigen polymerase compare
PP_2356 -1.9 -9.2 putative Phytochrome family protein compare
PP_4004 -1.9 -3.4 DNA translocase FtsK compare
PP_0393 -1.9 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4993 -1.9 -2.6 Glutathione synthetase compare
PP_2302 -1.9 -4.1 DNA-binding, ATP-dependent protease compare
PP_0961 -1.9 -6.0 toluene tolerance protein compare
PP_5717 -1.9 -2.2 conserved protein of unknown function compare
PP_2328 -1.8 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_0001 -1.8 -1.8 probable chromosome-partitioning protein compare
PP_2335 -1.8 -6.6 methylcitrate synthase compare
PP_4779 -1.8 -11.5 AMP nucleosidase compare
PP_0248 -1.8 -8.3 Probable alpha-L-glutamate ligase compare
PP_4254 -1.8 -2.8 conserved protein of unknown function compare
PP_1734 -1.7 -1.2 Probable septum site-determining protein MinC compare
PP_3474 -1.7 -2.3 putative Curli fiber protein CsgE compare
PP_5085 -1.7 -6.0 malic enzyme B compare
PP_1493 -1.7 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1122 -1.7 -3.1 OmpA family protein compare
PP_4782 -1.7 -4.2 Phosphomethylpyrimidine kinase compare
PP_1217 -1.7 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5500 -1.7 -2.7 protein of unknown function compare
PP_1215 -1.6 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1439 -1.6 -2.3 conserved exported protein of unknown function compare
PP_5217 -1.6 -10.9 Polyphosphate kinase compare
PP_1182 -1.6 -6.3 Sensor histidine kinase compare
PP_0413 -1.6 -8.8 Polyamine ABC transporter, permease protein compare
PP_4938 -1.5 -5.3 putative Glycosyl transferase compare
PP_4701 -1.5 -1.4 glucose-6-phosphate isomerase compare
PP_5232 -1.5 -2.3 conserved protein of unknown function compare
PP_1679 -1.5 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1322 -1.5 -1.2 putative Lipoprotein compare
PP_0959 -1.5 -1.7 phospholipid ABC transporter compare
PP_5202 -1.5 -1.5 putative cell division protein compare
PP_0789 -1.5 -4.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3603 -1.5 -6.0 Transcriptional regulator, GntR family compare
PP_2214 -1.5 -2.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0997 -1.4 -6.3 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_2354 -1.4 -7.3 Sensory box histidine kinase/response regulator compare
PP_1778 -1.4 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_0960 -1.4 -3.1 phospholipid ABC transporter binding protein compare
PP_4591 -1.4 -3.6 Ribonuclease D compare
PP_2163 -1.4 -4.8 VacJ lipoprotein compare
PP_0002 -1.4 -5.5 probable chromosome partition protein compare
PP_3555 -1.4 -3.9 putative Transmembrane sensor compare
PP_1328 -1.4 -2.4 Protein MraZ compare
PP_3833 -1.4 -3.3 Response regulator compare
PP_3505 -1.4 -1.8 conserved protein of unknown function compare
PP_1654 -1.4 -2.2 cysteine synthase B compare
PP_1676 -1.3 -3.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0735 -1.3 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_2976 -1.3 -2.1 putative transposase compare
PP_1344 -1.3 -1.5 conserved protein of unknown function compare
PP_0989 -1.3 -1.9 glycine cleavage system H protein 1 compare
PP_4545 -1.3 -4.1 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_2436 -1.3 -4.8 Transcriptional regulator, LysR family compare
PP_1714 -1.3 -5.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_0988 -1.3 -6.5 glycine dehydrogenase compare
PP_5008 -1.3 -1.6 Poly granule-associated protein compare
PP_3637 -1.3 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5328 -1.3 -1.8 putative phosphate transport system permease protein compare
PP_1800 -1.2 -6.7 Oxidoreductase Rmd compare
PP_5348 -1.2 -7.5 Transcriptional regulator, LysR family compare
PP_2336 -1.2 -2.0 aconitate hydratase 1 compare
PP_1309 -1.2 -4.7 conserved exported protein of unknown function compare
PP_4824 -1.2 -3.0 Sensor histidine kinase/response regulator compare
PP_1185 -1.2 -3.0 Outer membrane protein H1 compare
PP_5350 -1.2 -2.1 Transcriptional regulator, RpiR family compare
PP_0339 -1.2 -4.0 Pyruvate dehydrogenase E1 component compare
PP_1968 -1.2 -4.2 TetR family transcriptional regulator compare
PP_3473 -1.2 -2.4 curli secretion and assembly outer membrane associated component compare
PP_4787 -1.2 -2.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4505 -1.2 -3.6 Sensor histidine kinase compare


Specific Phenotypes

For 24 genes in this experiment

For carbon source Delta-Dodecalactone in Pseudomonas putida KT2440

For carbon source Delta-Dodecalactone across organisms