Experiment set12IT049 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.4 -3.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3763 -3.4 -2.3 hypothetical protein compare
Atu4616 -3.0 -3.5 dTDP-4-dehydrorhamnose reductase compare
Atu2036 -2.5 -13.9 acetolactate synthase III, large subunit compare
Atu0331 -2.4 -3.4 sigma-54 modulation protein compare
Atu2728 -2.4 -5.0 beta (1-->2) glucan export ATP-binding protein compare
Atu0043 -2.3 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu0031 -2.3 -2.2 PTS system, IIA component compare
Atu0163 -2.3 -9.5 tonB protein compare
Atu0040 -2.2 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4773 -2.2 -2.4 two component response regulator compare
Atu1417 -2.2 -8.0 enoyl-CoA hydratase compare
Atu0399 -2.1 -6.7 dihydroorotase compare
Atu0162 -2.1 -4.8 biopolymer transport protein compare
Atu1588 -2.1 -8.1 homoserine dehydrogenase compare
Atu3009 -2.0 -2.0 exopolysaccharide production protein compare
Atu0141 -2.0 -2.1 cytochrome O ubiquinol oxidase subunit I compare
Atu0361 -2.0 -4.3 transcriptional regulator compare
Atu2439 -1.9 -2.1 hypothetical protein compare
Atu3908 -1.9 -8.4 GntR family transcriptional regulator compare
Atu0161 -1.8 -10.0 biopolymer transport protein compare
Atu3730 -1.8 -1.8 hypothetical protein compare
Atu3707 -1.8 -4.0 phosphoserine aminotransferase compare
Atu4317 -1.7 -3.5 TetR family transcriptional regulator compare
Atu0976 -1.7 -3.2 cycL protein compare
Atu0894 -1.7 -3.2 ABC transporter, membrane spanning protein compare
Atu2207 -1.7 -2.7 two component sensor kinase compare
Atu6098 -1.7 -1.5 transcriptional regulator, HTH family compare
Atu0486 -1.6 -3.6 dihydroorotate dehydrogenase compare
Atu0971 -1.6 -3.5 two component sensor kinase compare
Atu0679 -1.6 -6.0 ATP phosphoribosyltransferase compare
Atu0041 -1.6 -1.6 glutamine amidotransferase compare
Atu0895 -1.6 -3.8 ABC transporter, substrate binding protein compare
Atu8087 -1.5 -1.8 putative peptidoglycan binding protein compare
Atu0038 -1.5 -6.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0184 -1.5 -2.7 glucokinase compare
Atu0769 -1.5 -1.9 protoheme IX farnesyltransferase compare
Atu3469 -1.5 -3.2 phosphoglyceromutase compare
Atu0876 -1.5 -2.1 superoxide dismutase compare
Atu2239 -1.4 -3.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0537 -1.4 -6.2 histidinol dehydrogenase compare
Atu1307 -1.4 -4.0 dihydroorotase compare
Atu1874 -1.4 -2.9 RecA protein compare
Atu0086 -1.4 -1.9 ribosome-binding factor A compare
Atu0039 -1.4 -2.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0723 -1.4 -2.2 FAD dependent oxidoreductase compare
Atu0678 -1.4 -6.8 histidyl-tRNA synthetase compare
Atu1364 -1.3 -4.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3690 -1.3 -7.3 iron (III ABC transporter permease dicitrate ABC transporter permease compare
Atu8167 -1.3 -8.4 putative transmembrane protein compare
Atu1308 -1.3 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu3496 -1.3 -2.7 hypothetical protein compare
Atu2640 -1.3 -3.9 hypothetical protein compare
Atu0050 -1.3 -5.0 two component response regulator compare
Atu2237 -1.2 -3.9 cytochrome c1 compare
Atu1535 -1.2 -3.1 cytochrome c oxidase, FixQ chain compare
Atu2832 -1.2 -3.7 tRNA modification GTPase compare
Atu4711 -1.2 -3.6 two component sensor kinase compare
Atu0422 -1.2 -1.8 ABC transporter, membrane spanning protein compare
Atu2790 -1.2 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu0400 -1.2 -2.5 orotate phosphoribosyltransferase compare
Atu1028 -1.2 -2.2 hypothetical protein compare
Atu3689 -1.1 -6.7 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2522 -1.1 -6.9 agrobacterium chromosomal virulence protein B compare
Atu1359 -1.1 -1.2 dnaK deletion suppressor protein compare
Atu8138 -1.1 -1.5 hypothetical protein compare
Atu4217 -1.1 -1.5 TetR family transcriptional regulator compare
Atu0153 -1.1 -3.8 transcriptional regulator, Fur family compare
Atu0298 -1.1 -4.0 orotidine 5 compare
Atu1688 -1.1 -4.2 indole-3-glycerol-phosphate synthase compare
Atu4882 -1.1 -2.0 hypothetical protein compare
Atu3121 -1.1 -1.6 cold shock protein compare
Atu1468 -1.1 -5.9 hypothetical protein compare
Atu2125 -1.1 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu3885 -1.1 -3.9 inositol monophosphatase compare
Atu1904 -1.1 -1.6 transcriptional regulator compare
Atu0977 -1.0 -2.6 serine protease DO-like protease compare
Atu3754 -1.0 -4.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1845 -1.0 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu1074 -1.0 -5.9 NAD/NADP dependent oxidoreductase compare
Atu1173 -1.0 -6.7 MFS permease compare
Atu3008 -1.0 -1.0 hypothetical protein compare
Atu3691 -1.0 -6.4 iron (III) dicitrate ABC transporter ATPase compare
Atu4072 -1.0 -1.6 nodulation protein N compare
Atu2073 -1.0 -4.0 membrane protein compare
Atu0401 -1.0 -4.9 fructokinase compare
Atu0051 -1.0 -4.0 two component sensor kinase compare
Atu2183 -1.0 -6.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2238 -1.0 -6.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1528 -0.9 -6.9 nitrogen fixation protein FixI compare
Atu1537 -0.9 -6.1 cytochrome-c oxidase, FixN chain compare
Atu1470 -0.9 -1.3 Camphor resistance protein compare
Atu4166 -0.9 -2.2 UDP-glucose 4-epimerase compare
Atu0923 -0.9 -4.2 hypothetical protein compare
Atu2584 -0.9 -4.1 hypothetical protein compare
Atu0784 -0.9 -2.3 hypothetical protein compare
Atu2040 -0.9 -3.1 phosphoserine phosphatase compare
Atu1534 -0.9 -5.1 cytochrome-c oxidase, FixP chain compare
Atu2798 -0.9 -3.2 precorrin-6y methyltransferase compare
Atu1750 -0.9 -3.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu1647 -0.9 -5.9 ABC transporter, membrane spanning protein compare
Atu3353 -0.9 -5.7 mannose-1-phosphate guanylyltransferase compare
Atu1182 -0.9 -2.2 hypothetical protein compare
Atu1687 -0.9 -4.9 anthranilate phosphoribosyltransferase compare
Atu3727 -0.9 -3.2 hypothetical protein compare
Atu0413 -0.9 -1.5 stress induced protein compare
Atu4346 -0.9 -3.8 hypothetical protein compare
Atu1645 -0.9 -5.4 ABC transporter, substrate binding protein compare
Atu0434 -0.8 -1.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2722 -0.8 -3.0 porin compare
Atu3706 -0.8 -3.7 D-3-phosphoglycerate dehydrogenase compare
Atu2289 -0.8 -6.4 anthranilate synthase component I and II compare
Atu2200 -0.8 -2.6 cold shock protein compare
Atu1619 -0.8 -2.5 protein-export membrane protein SECG compare
Atu1844 -0.8 -2.1 Phosphoribosylformylglycinamidine synthetase compare
Atu0029 -0.8 -3.1 S-adenosylhomocysteine hydrolase compare
Atu3688 -0.8 -2.5 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu0099 -0.8 -4.9 prephenate dehydratase compare
Atu1513 -0.8 -3.1 ABC excinuclease subunit A compare
Atu1739 -0.8 -2.5 permease compare
Atu1447 -0.8 -1.3 two component sensor kinase compare
Atu3018 -0.8 -2.3 hypothetical protein compare
Atu1205 -0.8 -5.2 threonine dehydratase compare
Atu4618 -0.8 -6.0 dTDP-rhamnose-3,5-epimerase compare
Atu2464 -0.8 -1.9 formyltetrahydrofolate deformylase compare
Atu1163 -0.8 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3755 -0.8 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3012 -0.8 -1.2 hypothetical protein compare
Atu4148 -0.8 -4.3 UDP-glucuronic acid epimerase compare
Atu1602 -0.8 -5.0 transcriptional activator, Crp family compare
Atu3485 -0.8 -5.1 short chain dehydrogenase compare
Atu1141 -0.8 -3.8 Phosphoribosylglycinamide synthetase compare
Atu1644 -0.8 -2.5 hypothetical protein compare
Atu3468 -0.8 -0.8 hypothetical protein compare
Atu0025 -0.8 -1.1 hypothetical protein compare
Atu2555 -0.8 -1.4 L-lysine 2,3-aminomutase compare
Atu1810 -0.8 -1.0 hypothetical protein compare
Atu1530 -0.8 -5.1 nitrogen fixation protein FixG compare
Atu2791 -0.8 -3.7 3-isopropylmalate dehydrogenase compare
Atu3017 -0.8 -1.1 phosphoglyceromutase compare
Atu8144 -0.7 -2.3 hypothetical protein compare
Atu2583 -0.7 -5.0 glycosyltransferase compare
Atu2650 -0.7 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu2684 -0.7 -0.6 hypothetical protein compare
Atu2264 -0.7 -4.7 2-isopropylmalate synthase compare
Atu2554 -0.7 -1.8 lysyl-tRNA synthetase compare
Atu2615 -0.7 -3.2 hypothetical protein compare
Atu0703 -0.7 -1.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu8082 -0.7 -1.8 hypothetical protein compare
Atu4149 -0.7 -4.6 UDP-glucose 6-dehydrogenase compare
Atu3013 -0.7 -2.7 hypothetical protein compare
Atu0149 -0.7 -1.9 enoyl-(acyl-carrier-protein) reductase compare
Atu1705 -0.7 -2.6 SEC-independent protein translocase protein compare
Atu0142 -0.7 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu0978 -0.7 -4.4 two component response regulator compare
Atu2801 -0.7 -2.2 precorrin-2 C20 methyltransferase compare
Atu2831 -0.7 -2.7 glucose inhibited division protein A compare
Atu0749 -0.7 -2.0 biotin synthesis BioY protein compare
Atu2616 -0.7 -3.5 hypothetical protein compare
Atu1902 -0.7 -3.1 transketolase compare
Atu1422 -0.7 -4.9 transcriptional regulator, MarR family compare
Atu3732 -0.7 -4.5 hemolysin compare
Atu1380 -0.7 -2.9 zinc metallopeptidase compare
Atu4328 -0.7 -2.5 hypothetical protein compare
Atu5142 -0.7 -1.8 hypothetical protein compare
Atu3219 -0.7 -4.8 dihydroxy-acid dehydratase compare
Atu0030 -0.7 -1.2 phosphocarrier protein HPr compare
Atu4614 -0.7 -4.4 glycosyltransferase compare
Atu4418 -0.7 -2.6 glutaryl-CoA dehydrogenase compare
Atu0201 -0.7 -1.7 hypothetical protein compare
Atu6165 -0.7 -1.2 hypothetical protein compare
Atu0062 -0.7 -3.8 transcriptional regulator, ROK family compare
Atu0973 -0.7 -2.9 cycH protein compare
Atu4446 -0.7 -3.4 hypothetical protein compare
Atu0017 -0.7 -1.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3744 -0.6 -4.4 ABC transporter permease compare
Atu4897 -0.6 -0.9 hypothetical protein compare
Atu4610 -0.6 -4.5 sugar nucleotide epimerase/dehydratase compare
Atu3634 -0.6 -3.2 penicillin-binding protein dacf precursor compare
Atu3311 -0.6 -4.9 phosphomannose isomerase compare
Atu2709 -0.6 -4.6 3-isopropylmalate dehydratase, large subunit compare
Atu6114 -0.6 -1.9 hypothetical protein compare
Atu4144 -0.6 -0.8 hypothetical protein compare
Atu0085 -0.6 -2.2 tRNA pseudouridine 55 synthase compare
Atu2577 -0.6 -4.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3598 -0.6 -1.6 thiol:disulfide interchange protein compare
Atu1527 -0.6 -1.6 nitrogen fixation protein FixS compare
Atu3757 -0.6 -1.1 hypothetical protein compare
Atu1646 -0.6 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2057 -0.6 -1.4 DNA helicase II compare
Atu2692 -0.6 -2.5 intracellular septation protein compare
Atu4615 -0.6 -4.2 glucose-1-phosphate thymidylyltransferase compare
Atu3739 -0.6 -1.3 phosphoglycerate kinase compare
Atu0846 -0.6 -2.0 transcriptional regulator, MarR family compare
Atu3011 -0.6 -1.0 ArsR family transcriptional regulator compare
Atu3423 -0.6 -1.2 hypothetical protein compare
Atu0638 -0.6 -1.5 hypothetical protein compare
Atu4075 -0.6 -3.5 glycogen synthase compare
Atu4068 -0.6 -1.8 sarcosine oxidase delta subunit compare
Atu1529 -0.6 -3.5 nitrogen fixation protein FixH compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms