Experiment set12IT048 for Pseudomonas putida KT2440

Compare to:

Delta-Undecalactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_0406 -8.3 -5.8 Nucleotidyltransferase family protein compare
PP_4890 -8.0 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -7.6 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1941 -7.4 -5.1 conserved protein of unknown function compare
PP_4678 -7.3 -8.7 Ketol-acid reductoisomerase compare
PP_1386 -7.3 -5.0 Probable efflux pump periplasmic linker TtgA compare
PP_2433 -7.3 -4.7 conserved protein of unknown function compare
PP_0422 -7.0 -6.8 Indole-3-glycerol phosphate synthase compare
PP_1985 -7.0 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_1385 -7.0 -8.3 Probable efflux pump membrane transporter TtgB compare
PP_3511 -6.9 -8.2 Branched-chain-amino-acid aminotransferase compare
PP_0966 -6.9 -9.5 Histidinol dehydrogenase compare
PP_2335 -6.9 -9.4 methylcitrate synthase compare
PP_4680 -6.9 -10.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -6.6 -4.6 Ornithine carbamoyltransferase compare
PP_2436 -6.6 -7.9 Transcriptional regulator, LysR family compare
PP_2903 -6.6 -4.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5097 -6.6 -12.6 homoserine O-acetyltransferase compare
PP_0767 -6.5 -10.9 Transcriptional regulator, LuxR family compare
PP_4817 -6.5 -6.3 MaoC domain protein compare
PP_4679 -6.5 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1988 -6.5 -10.8 3-isopropylmalate dehydrogenase compare
PP_1995 -6.4 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -6.4 -21.4 Anthranilate synthase component 1 compare
PP_5289 -6.3 -4.3 Acetylglutamate kinase compare
PP_2168 -6.2 -8.6 Transaldolase compare
PP_0965 -6.1 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -6.1 -9.3 methionine biosynthesis protein MetW compare
PP_2001 -6.1 -11.7 O-succinylhomoserine sulfhydrylase compare
PP_5015 -6.0 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4116 -6.0 -12.8 isocitrate lyase compare
PP_0691 -6.0 -4.1 Glutamate 5-kinase compare
PP_0356 -5.9 -9.9 malate synthase G compare
PP_4723 -5.8 -8.0 Carbamoyl-phosphate synthase large chain compare
PP_5185 -5.8 -5.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -5.8 -10.2 Anthranilate phosphoribosyltransferase compare
PP_1355 -5.8 -17.5 Muropeptide permease AmpG compare
PP_3925 -5.7 -17.2 conserved protein of unknown function compare
PP_0368 -5.6 -10.1 putative Acyl-CoA dehydrogenase compare
PP_0293 -5.6 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1231 -5.5 -7.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5014 -5.5 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4724 -5.5 -6.5 Carbamoyl-phosphate synthase small chain compare
PP_1088 -5.4 -8.3 Argininosuccinate synthase compare
PP_5128 -5.3 -9.2 Dihydroxy-acid dehydratase compare
PP_0787 -5.3 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2136 -5.2 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0290 -5.2 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1384 -5.1 -7.8 Probable efflux pump outer membrane protein TtgC compare
PP_0083 -5.1 -3.5 tryptophan synthase beta chain compare
PP_1898 -5.1 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_2137 -4.9 -4.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4699 -4.9 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2370 -4.9 -4.7 conserved protein of unknown function compare
PP_4994 -4.8 -5.7 conserved protein of unknown function compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_0184 -4.7 -3.3 Argininosuccinate lyase compare
PP_4937 -4.7 -5.6 toluene tolerance protein compare
PP_4122 -4.7 -3.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0434 -4.6 -7.3 Anhydro-N-acetylmuramic acid kinase compare
PP_0289 -4.6 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0405 -4.5 -18.0 conserved protein of unknown function compare
PP_2334 -4.5 -7.9 2-methylisocitrate lyase compare
PP_0370 -4.5 -18.0 Acyl-CoA dehydrogenase family protein compare
PP_5155 -4.5 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5347 -4.5 -13.8 pyruvate carboxylase subunit A compare
PP_5095 -4.3 -3.0 pyrroline-5-carboxylate reductase compare
PP_4799 -4.3 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5346 -4.3 -11.0 pyruvate carboxylase subunit B compare
PP_5104 -4.2 -7.0 thiazole synthase compare
PP_4999 -4.2 -2.9 dihydroorotase-like protein compare
PP_2371 -4.1 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_2145 -4.1 -6.0 beta-N-acetylglucosaminidase compare
PP_3649 -4.0 -5.5 Transcriptional regulator, GntR family compare
PP_2019 -4.0 -18.4 adhesin-associated MmpL efflux pump (from data) compare
PP_4008 -4.0 -8.8 ATP-dependent serine protease compare
PP_2327 -3.9 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -3.9 -10.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2806 -3.9 -6.6 Transcriptional regulator, TetR family compare
PP_4909 -3.9 -9.7 phosphoserine phosphatase compare
PP_0765 -3.9 -17.9 putative adhesin (DUF1302) (from data) compare
PP_2868 -3.9 -8.8 Transcriptional regulator, Cro/CI family compare
PP_4131 -3.8 -5.8 NADH-quinone oxidoreductase subunit N compare
PP_4342 -3.7 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_2328 -3.7 -9.5 Phosphoadenosine phosphosulfate reductase compare
PP_1233 -3.7 -5.2 sulfurtransferase compare
PP_0766 -3.6 -15.7 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_0901 -3.6 -6.7 DNA-binding response regulator compare
PP_2337 -3.5 -2.4 aconitate isomerase compare
PP_4696 -3.5 -4.1 Nitrogen regulation protein NR(I) compare
PP_5659 -3.5 -6.0 protein of unknown function compare
PP_1468 -3.4 -3.0 Tyrosine recombinase XerD compare
PP_4129 -3.4 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4058 -3.3 -13.1 1,4-alpha-glucan branching enzyme compare
PP_0547 -3.3 -6.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4120 -3.3 -4.5 NADH-quinone oxidoreductase subunit B compare
PP_1654 -3.3 -3.2 cysteine synthase B compare
PP_4098 -3.3 -3.9 UvrABC system protein C compare
PP_2018 -3.3 -5.1 adhesin-associated BNR repeat protein (from data) compare
PP_4126 -3.2 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_0065 -3.2 -2.2 NAD-binding component of TrK potassium transporter compare
PP_4124 -3.2 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_4782 -3.1 -6.5 Phosphomethylpyrimidine kinase compare
PP_1232 -3.1 -9.5 conserved exported protein of unknown function compare
PP_2302 -3.0 -4.1 DNA-binding, ATP-dependent protease compare
PP_3447 -3.0 -2.0 conserved membrane protein of unknown function compare
PP_2029 -3.0 -2.8 von Willebrand factor type A domain protein compare
PP_4532 -3.0 -3.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4130 -3.0 -5.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0852 -3.0 -4.3 Transcriptional regulator, Cro/CI family compare
PP_0959 -2.9 -2.5 phospholipid ABC transporter compare
PP_1328 -2.8 -3.4 Protein MraZ compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_0735 -2.8 -2.5 molybdopterin-synthase adenylyltransferase compare
PP_5338 -2.8 -2.7 aspartate ammonia-lyase compare
PP_4121 -2.7 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5350 -2.7 -2.6 Transcriptional regulator, RpiR family compare
PP_0362 -2.7 -9.3 Biotin synthase compare
PP_4695 -2.6 -9.1 Sensory box histidine kinase compare
PP_1217 -2.6 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2336 -2.6 -1.8 aconitate hydratase 1 compare
PP_5337 -2.6 -5.9 LysR family transcriptional regulator compare
PP_0938 -2.5 -6.6 conserved protein of unknown function compare
PP_3926 -2.5 -2.4 short-chain dehydrogenase compare
PP_2163 -2.5 -7.7 VacJ lipoprotein compare
PP_2378 -2.5 -3.3 Fe/S biogenesis protein NfuA compare
PP_2028 -2.5 -5.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0763 -2.5 -10.4 Medium-chain-fatty-acid CoA ligase compare
PP_2817 -2.5 -7.2 Multidrug efflux RND membrane fusion protein MexC compare
PP_0435 -2.5 -6.7 Peptidase, M23/M37 family compare
PP_1216 -2.5 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0339 -2.5 -6.3 Pyruvate dehydrogenase E1 component compare
PP_0961 -2.5 -6.1 toluene tolerance protein compare
PP_5007 -2.4 -3.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4172 -2.4 -8.7 conserved exported protein of unknown function compare
PP_4004 -2.4 -3.6 DNA translocase FtsK compare
PP_0291 -2.4 -2.6 conserved protein of unknown function compare
PP_3603 -2.4 -7.2 Transcriptional regulator, GntR family compare
PP_2818 -2.3 -11.3 Multidrug efflux RND transporter MexD compare
PP_5348 -2.3 -7.6 Transcriptional regulator, LysR family compare
PP_0413 -2.3 -11.2 Polyamine ABC transporter, permease protein compare
PP_3474 -2.2 -1.8 putative Curli fiber protein CsgE compare
PP_0292 -2.2 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0164 -2.2 -7.7 conserved protein of unknown function compare
PP_2030 -2.2 -4.1 conserved protein of unknown function compare
PP_1734 -2.2 -2.1 Probable septum site-determining protein MinC compare
PP_4922 -2.1 -8.5 Phosphomethylpyrimidine synthase compare
PP_0958 -2.1 -5.8 phospholipid ABC transporter ATP-binding subunit compare
PP_4948 -2.1 -9.2 Acyl-CoA dehydrogenase family protein compare
PP_0363 -2.1 -11.0 8-amino-7-oxononanoate synthase compare
PP_3821 -2.1 -7.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4173 -2.1 -9.0 Sensor histidine kinase/response regulator compare
PP_1021 -2.1 -4.3 DNA-binding transcriptional regulator compare
PP_1187 -2.0 -5.3 sensor protein compare
PP_2356 -2.0 -10.2 putative Phytochrome family protein compare
PP_2414 -2.0 -2.0 conserved exported protein of unknown function compare
PP_0846 -2.0 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_3946 -2.0 -1.3 HTH-type transcriptional repressor NicR compare
PP_4804 -2.0 -2.4 RlpA-like lipoprotein compare
PP_1428 -2.0 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_5198 -2.0 -3.0 conserved protein of unknown function compare
PP_0962 -1.9 -2.3 toluene-tolerance protein compare
PP_3248 -1.9 -1.8 Dyp-type peroxidase family protein compare
PP_5313 -1.9 -4.0 DNA-binding protein HU-alpha compare
PP_1733 -1.9 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_3637 -1.9 -1.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5035 -1.8 -6.0 Histidine utilization repressor compare
PP_0364 -1.8 -6.4 pimeloyl-[acp] methyl ester esterase compare
PP_3833 -1.8 -4.2 Response regulator compare
PP_0986 -1.8 -4.6 aminomethyltransferase compare
PP_0365 -1.8 -8.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5331 -1.8 -2.8 Long-chain acyl-CoA thioester hydrolase compare
PP_5028 -1.8 -1.8 proline iminopeptidase compare
PP_4943 -1.8 -2.7 putative Glycosyl transferase compare
PP_4722 -1.8 -3.7 Transcription elongation factor GreA compare
PP_0393 -1.8 -2.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4824 -1.8 -4.5 Sensor histidine kinase/response regulator compare
PP_0138 -1.7 -5.5 conserved membrane protein of unknown function compare
PP_1036 -1.7 -6.3 membrane-bound lytic murein transglycosylase F compare
PP_3110 -1.7 -1.5 protein of unknown function compare
PP_3484 -1.7 -3.1 Response regulator receiver protein compare
PP_0319 -1.7 -2.5 conserved protein of unknown function compare
PP_3555 -1.7 -5.9 putative Transmembrane sensor compare
PP_1430 -1.7 -7.1 putative periplasmic serine endoprotease DegP-like compare
PP_2144 -1.7 -3.1 Transcriptional regulator, TetR family compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_0063 -1.7 -2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0248 -1.6 -8.7 Probable alpha-L-glutamate ligase compare
PP_5203 -1.6 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_1226 -1.6 -3.8 pre-queuosine 0 synthase compare
PP_2032 -1.6 -4.0 putative ATPase compare
PP_4471 -1.6 -3.6 Magnesium transporter compare
PP_5000 -1.6 -1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_4546 -1.6 -3.7 ATP-dependent helicase HrpA compare
PP_0832 -1.6 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1999 -1.6 -2.6 membrane protein required for colicin V production compare
PP_5085 -1.6 -5.0 malic enzyme B compare
PP_0366 -1.6 -5.4 dethiobiotin synthetase compare
PP_5486 -1.6 -2.5 conserved protein of unknown function compare


Specific Phenotypes

For 45 genes in this experiment

For carbon source Delta-Undecalactone in Pseudomonas putida KT2440

For carbon source Delta-Undecalactone across organisms