Experiment set12IT047 for Pseudomonas putida KT2440

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -8.0 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_3951 -7.8 -5.4 3-oxoadipate CoA-transferase subunit A conserved
PP_1985 -7.7 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_3952 -7.7 -7.5 3-oxoadipate CoA-transferase subunit A conserved
PP_0966 -7.2 -8.5 Histidinol dehydrogenase compare
PP_0422 -7.1 -6.9 Indole-3-glycerol phosphate synthase compare
PP_4656 -7.0 -8.4 protocatechuate 3,4-dioxygenase beta chain conserved
PP_4680 -7.0 -10.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -6.9 -10.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1380 -6.9 -6.7 3-oxoadipate enol-lactonase 2 conserved
PP_5015 -6.8 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1988 -6.8 -9.3 3-isopropylmalate dehydrogenase compare
PP_2371 -6.6 -6.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4678 -6.5 -15.3 Ketol-acid reductoisomerase compare
PP_5097 -6.5 -13.3 homoserine O-acetyltransferase compare
PP_1377 -6.5 -8.9 beta-ketoadipyl-CoA thiolase conserved
PP_1986 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_3511 -6.4 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_1375 -6.4 -13.7 transcription regulatory protein (pca regulon) conserved
PP_1379 -6.4 -8.8 3-carboxy-cis,cis-muconate cycloisomerase conserved
PP_0965 -6.2 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -6.2 -4.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2001 -6.1 -12.0 O-succinylhomoserine sulfhydrylase compare
PP_4679 -6.0 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -6.0 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -6.0 -4.1 Glutamate 5-kinase compare
PP_2388 -5.9 -5.7 Transporter, LysE family compare
PP_0417 -5.9 -20.3 Anthranilate synthase component 1 compare
PP_4655 -5.9 -9.5 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_5098 -5.8 -9.7 methionine biosynthesis protein MetW compare
PP_1995 -5.8 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4724 -5.7 -5.6 Carbamoyl-phosphate synthase small chain compare
PP_1088 -5.7 -6.8 Argininosuccinate synthase compare
PP_4723 -5.6 -9.4 Carbamoyl-phosphate synthase large chain compare
PP_0967 -5.6 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -5.6 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1231 -5.6 -7.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5289 -5.5 -5.3 Acetylglutamate kinase compare
PP_1079 -5.4 -7.5 Ornithine carbamoyltransferase compare
PP_5014 -5.4 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1381 -5.3 -2.2 4-carboxymuconolactone decarboxylase compare
PP_5155 -5.3 -7.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -5.1 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -5.1 -8.5 Dihydroxy-acid dehydratase compare
PP_4364 -4.9 -4.4 putative Anti-sigma F factor antagonist compare
PP_0164 -4.9 -10.5 conserved protein of unknown function compare
PP_0421 -4.9 -9.0 Anthranilate phosphoribosyltransferase compare
PP_2327 -4.9 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0083 -4.8 -4.7 tryptophan synthase beta chain compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_3999 -4.7 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -4.7 -10.5 phosphoserine phosphatase compare
PP_2168 -4.4 -13.2 Transaldolase compare
PP_0787 -4.3 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4999 -4.2 -2.9 dihydroorotase-like protein compare
PP_4943 -4.2 -2.9 putative Glycosyl transferase compare
PP_5303 -4.2 -7.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0184 -4.2 -5.7 Argininosuccinate lyase compare
PP_2328 -4.1 -9.4 Phosphoadenosine phosphosulfate reductase compare
PP_1376 -4.1 -13.0 4-hydroxybenzoate transporter compare
PP_1233 -4.0 -5.3 sulfurtransferase compare
PP_0292 -3.9 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -3.9 -2.7 Nitrogen regulation protein NR(I) compare
PP_4799 -3.8 -3.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1025 -3.7 -8.7 2-isopropylmalate synthase compare
PP_1713 -3.7 -3.3 Transcriptional regulator PcaQ compare
PP_2390 -3.6 -10.8 Transcriptional regulator, LysR family compare
PP_0735 -3.5 -2.7 molybdopterin-synthase adenylyltransferase compare
PP_0339 -3.5 -5.8 Pyruvate dehydrogenase E1 component compare
PP_1215 -3.4 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_5095 -3.1 -3.0 pyrroline-5-carboxylate reductase compare
PP_1216 -3.0 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1468 -2.9 -2.9 Tyrosine recombinase XerD compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_4782 -2.6 -5.6 Phosphomethylpyrimidine kinase compare
PP_5104 -2.6 -7.5 thiazole synthase compare
PP_0393 -2.5 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1994 -2.5 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_4993 -2.4 -3.6 Glutathione synthetase compare
PP_5217 -2.4 -12.1 Polyphosphate kinase compare
PP_0291 -2.3 -2.3 conserved protein of unknown function compare
PP_3790 -2.2 -8.4 diaminopimelate epimerase compare
PP_4004 -2.1 -3.3 DNA translocase FtsK compare
PP_1568 -2.1 -1.8 conserved protein of unknown function compare
PP_1664 -2.0 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4922 -2.0 -10.5 Phosphomethylpyrimidine synthase compare
PP_3484 -1.9 -4.8 Response regulator receiver protein compare
PP_4699 -1.9 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1378 -1.8 -5.1 alpha-ketoglutarate permease compare
PP_4122 -1.8 -2.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0435 -1.8 -10.4 Peptidase, M23/M37 family compare
PP_3505 -1.7 -2.0 conserved protein of unknown function compare
PP_0406 -1.7 -6.6 Nucleotidyltransferase family protein compare
PP_4917 -1.7 -3.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4695 -1.7 -7.9 Sensory box histidine kinase compare
PP_2414 -1.7 -1.6 conserved exported protein of unknown function compare
PP_4136 -1.6 -1.8 Transcriptional regulator, LuxR family compare
PP_5114 -1.6 -2.2 putative adenine methyltransferase compare
PP_4121 -1.6 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1493 -1.6 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3248 -1.6 -1.8 Dyp-type peroxidase family protein compare
PP_2031 -1.6 -1.5 conserved protein of unknown function compare
PP_1826 -1.5 -2.9 Hydrolase, isochorismatase family compare
PP_2336 -1.5 -2.8 aconitate hydratase 1 compare
PP_0593 -1.5 -1.3 putative ribosome-binding factor compare
PP_4880 -1.5 -7.0 exoribonuclease R compare
PP_0949 -1.4 -4.7 putative ATP-binding protein UPF0042 compare
PP_4804 -1.4 -2.2 RlpA-like lipoprotein compare
PP_2356 -1.4 -8.0 putative Phytochrome family protein compare
PP_5652 -1.4 -3.0 conserved protein of unknown function, phage origin compare
PP_4124 -1.4 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_5227 -1.4 -5.0 diaminopimelate decarboxylase compare
PP_1217 -1.4 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2354 -1.4 -7.5 Sensory box histidine kinase/response regulator compare
PP_3590 -1.3 -6.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4546 -1.3 -3.1 ATP-dependent helicase HrpA compare
PP_0368 -1.3 -5.5 putative Acyl-CoA dehydrogenase compare
PP_1629 -1.3 -4.0 Protein RecA compare
PP_2337 -1.3 -2.3 aconitate isomerase compare
PP_0612 -1.3 -6.9 FAD-dependent glycine/D-amino acid oxidase compare
PP_5346 -1.3 -6.9 pyruvate carboxylase subunit B compare
PP_5347 -1.3 -6.2 pyruvate carboxylase subunit A compare
PP_1912 -1.3 -3.3 Phosphate acyltransferase compare
PP_4392 -1.3 -5.2 chemotaxis protein methyltransferase compare
PP_5146 -1.3 -5.5 RNA pyrophosphohydrolase compare
PP_1021 -1.3 -4.6 DNA-binding transcriptional regulator compare
PP_5035 -1.3 -4.8 Histidine utilization repressor compare
PP_1355 -1.3 -9.7 Muropeptide permease AmpG compare
PP_2402 -1.3 -1.9 putative Sensor histidine kinase compare
PP_5198 -1.3 -2.4 conserved protein of unknown function compare
PP_4481 -1.3 -5.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1770 -1.2 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1348 -1.2 -3.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4120 -1.2 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_0434 -1.2 -6.2 Anhydro-N-acetylmuramic acid kinase compare
PP_4131 -1.2 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_5230 -1.2 -2.7 Tyrosine recombinase XerC compare
PP_5338 -1.2 -2.2 aspartate ammonia-lyase compare
PP_1764 -1.1 -5.1 Phosphoglycolate phosphatase 2 compare
PP_4296 -1.1 -1.4 conserved exported protein of unknown function compare
PP_0120 -1.1 -4.4 putative zinc ABC transporter compare
PP_1198 -1.1 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0405 -1.1 -7.8 conserved protein of unknown function compare
PP_4338 -1.1 -5.3 Chemotaxis histidine kinase CheA compare
PP_0846 -1.1 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_5329 -1.1 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4129 -1.1 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5327 -1.1 -3.2 putative phosphate ABC transporter, permease subunit compare
PP_2132 -1.1 -3.0 Universal stress protein compare
PP_3821 -1.1 -3.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0630 -1.1 -1.0 DNA gyrase inhibitor YacG compare
PP_2820 -1.1 -3.1 HTH-type transcriptional regulator nfxB compare
PP_0834 -1.1 -1.5 Sec translocation complex subunit YajC compare
PP_5007 -1.1 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2145 -1.1 -4.3 beta-N-acetylglucosaminidase compare
PP_2718 -1.1 -2.1 arsenic resistance transcriptional regulator compare
PP_5445 -1.0 -2.7 conserved protein of unknown function compare
PP_0914 -1.0 -5.5 GGDEF domain protein compare
PP_1293 -1.0 -1.6 molybdopterin synthase small subunit compare
PP_0988 -1.0 -5.9 glycine dehydrogenase compare
PP_1734 -1.0 -1.8 Probable septum site-determining protein MinC compare
PP_1999 -1.0 -2.2 membrane protein required for colicin V production compare
PP_4340 -1.0 -3.2 response regulator for chemotactic signal transduction compare
PP_2302 -1.0 -3.4 DNA-binding, ATP-dependent protease compare
PP_5352 -1.0 -5.7 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3662 -1.0 -4.8 conserved protein of unknown function compare
PP_2000 -1.0 -1.4 amidophosphoribosyl transferase compare
PP_1304 -1.0 -5.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4515 -0.9 -5.2 Transcriptional regulator, MarR family compare
PP_5597 -0.9 -2.2 conserved protein of unknown function compare
PP_2847 -0.9 -1.7 Urease accessory protein UreJ compare
PP_4480 -0.9 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_3715 -0.9 -1.9 Muconate cycloisomerase 1 compare
PP_1426 -0.9 -5.6 L-aspartate oxidase compare
PP_3880 -0.9 -1.2 conserved exported protein of unknown function compare
PP_1303 -0.9 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_4010 -0.9 -2.2 DNA replication inhibitor compare
PP_0547 -0.9 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4199 -0.9 -1.2 putative Lipoprotein compare
PP_5048 -0.9 -4.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0218 -0.9 -5.0 Sensory box protein compare
PP_2087 -0.9 -1.8 CmpX protein compare
PP_3359 -0.9 -1.4 putative Hydroxycinnamic acid degradation regulator compare
PP_1214 -0.9 -2.1 putative transcriptional regulatory protein compare
PP_0989 -0.8 -1.6 glycine cleavage system H protein 1 compare
PP_5085 -0.8 -2.9 malic enzyme B compare
PP_1589 -0.8 -4.3 uridylyltransferase compare
PP_0356 -0.8 -3.6 malate synthase G compare
PP_0119 -0.8 -3.6 putative zinc uptake regulation protein ZUR compare
PP_2313 -0.8 -1.7 conserved membrane protein of unknown function compare
PP_4133 -0.8 -1.6 Transcriptional regulator-related protein compare
PP_5294 -0.8 -3.2 Ribonuclease PH compare
PP_5580 -0.8 -2.1 protein of unknown function compare
PP_1783 -0.8 -0.7 dTDP-glucose pyrophosphorylase compare
PP_1387 -0.8 -1.8 Probable HTH-type transcriptional regulator TtgR compare
PP_1326 -0.8 -1.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2144 -0.8 -2.1 Transcriptional regulator, TetR family compare
PP_5008 -0.8 -1.3 Poly granule-associated protein compare
PP_3487 -0.8 -2.6 conserved exported protein of unknown function compare
PP_0261 -0.8 -3.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Protocatechuic Acid in Pseudomonas putida KT2440

For carbon source Protocatechuic Acid across organisms