Experiment set12IT046 for Pseudomonas putida KT2440

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0966 -7.3 -8.7 Histidinol dehydrogenase compare
PP_1985 -7.2 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_4679 -7.2 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -7.0 -11.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -6.9 -14.0 Ketol-acid reductoisomerase compare
PP_5098 -6.8 -8.1 methionine biosynthesis protein MetW compare
PP_1988 -6.7 -10.2 3-isopropylmalate dehydrogenase compare
PP_4909 -6.7 -6.5 phosphoserine phosphatase compare
PP_5097 -6.6 -14.1 homoserine O-acetyltransferase compare
PP_1995 -6.6 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -6.6 -10.0 Branched-chain-amino-acid aminotransferase compare
PP_0967 -6.5 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1377 -6.5 -8.9 beta-ketoadipyl-CoA thiolase conserved
PP_4680 -6.4 -14.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -6.3 -12.2 O-succinylhomoserine sulfhydrylase compare
PP_0691 -6.1 -4.2 Glutamate 5-kinase compare
PP_3952 -6.1 -10.5 3-oxoadipate CoA-transferase subunit A conserved
PP_0290 -6.0 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4890 -5.9 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0164 -5.8 -8.9 conserved protein of unknown function compare
PP_0965 -5.8 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -5.8 -6.9 Ornithine carbamoyltransferase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1088 -5.7 -7.8 Argininosuccinate synthase compare
PP_5155 -5.7 -7.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1379 -5.6 -10.1 3-carboxy-cis,cis-muconate cycloisomerase conserved
PP_3951 -5.6 -6.6 3-oxoadipate CoA-transferase subunit A compare
PP_5289 -5.6 -5.5 Acetylglutamate kinase compare
PP_2371 -5.6 -9.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0417 -5.5 -18.7 Anthranilate synthase component 1 compare
PP_1713 -5.4 -3.1 Transcriptional regulator PcaQ compare
PP_5015 -5.4 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4723 -5.4 -12.0 Carbamoyl-phosphate synthase large chain compare
PP_1986 -5.4 -5.2 3-isopropylmalate dehydratase small subunit compare
PP_0422 -5.4 -8.1 Indole-3-glycerol phosphate synthase compare
PP_1380 -5.3 -8.8 3-oxoadipate enol-lactonase 2 conserved
PP_0289 -5.2 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2327 -4.9 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -4.9 -8.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_5014 -4.9 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -4.9 -8.6 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.8 -5.8 tryptophan synthase beta chain compare
PP_1375 -4.8 -15.0 transcription regulatory protein (pca regulon) conserved
PP_5185 -4.8 -7.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -4.8 -8.4 Dihydroxy-acid dehydratase compare
PP_0082 -4.7 -4.5 tryptophan synthase alpha chain compare
PP_0292 -4.6 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4656 -4.6 -9.9 protocatechuate 3,4-dioxygenase beta chain conserved
PP_0787 -4.5 -6.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4724 -4.5 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_5095 -4.5 -3.1 pyrroline-5-carboxylate reductase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5085 -4.4 -6.7 malic enzyme B compare
PP_4999 -4.4 -3.0 dihydroorotase-like protein compare
PP_4364 -4.3 -3.9 putative Anti-sigma F factor antagonist compare
PP_1231 -4.1 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1025 -3.9 -10.4 2-isopropylmalate synthase compare
PP_4655 -3.9 -8.0 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_2168 -3.8 -11.6 Transaldolase compare
PP_3538 -3.8 -14.3 transcriptional regulator conserved
PP_2388 -3.7 -5.6 Transporter, LysE family compare
PP_1381 -3.6 -2.1 4-carboxymuconolactone decarboxylase compare
PP_2414 -3.6 -3.3 conserved exported protein of unknown function compare
PP_4696 -3.6 -4.3 Nitrogen regulation protein NR(I) compare
PP_3537 -3.6 -10.4 p-hydroxybenzoate hydroxylase conserved
PP_4943 -3.6 -3.5 putative Glycosyl transferase compare
PP_1233 -3.5 -6.0 sulfurtransferase compare
PP_3590 -3.5 -7.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1237 -3.4 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3105 -3.3 -2.9 conserved membrane protein of unknown function compare
PP_5303 -3.2 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5104 -3.2 -7.3 thiazole synthase compare
PP_2370 -3.1 -2.9 conserved protein of unknown function compare
PP_0393 -3.0 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0291 -3.0 -3.0 conserved protein of unknown function compare
PP_4782 -3.0 -7.5 Phosphomethylpyrimidine kinase compare
PP_0339 -3.0 -6.9 Pyruvate dehydrogenase E1 component compare
PP_1493 -3.0 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4699 -3.0 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2328 -2.9 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_4122 -2.9 -3.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_3484 -2.8 -6.3 Response regulator receiver protein compare
PP_4922 -2.7 -12.9 Phosphomethylpyrimidine synthase compare
PP_1216 -2.6 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0735 -2.4 -2.5 molybdopterin-synthase adenylyltransferase compare
PP_5347 -2.4 -9.6 pyruvate carboxylase subunit A compare
PP_2390 -2.4 -7.4 Transcriptional regulator, LysR family compare
PP_5346 -2.3 -8.2 pyruvate carboxylase subunit B compare
PP_1215 -2.3 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_1468 -2.2 -1.5 Tyrosine recombinase XerD compare
PP_4917 -2.2 -5.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4004 -2.0 -3.4 DNA translocase FtsK compare
PP_5348 -2.0 -8.5 Transcriptional regulator, LysR family compare
PP_5331 -2.0 -6.0 Long-chain acyl-CoA thioester hydrolase compare
PP_1733 -2.0 -3.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_5217 -1.9 -12.6 Polyphosphate kinase compare
PP_0001 -1.9 -1.5 probable chromosome-partitioning protein compare
PP_2402 -1.8 -3.7 putative Sensor histidine kinase compare
PP_2499 -1.8 -2.5 conserved protein of unknown function compare
PP_5114 -1.8 -2.4 putative adenine methyltransferase compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_4340 -1.8 -2.8 response regulator for chemotactic signal transduction compare
PP_1912 -1.8 -4.1 Phosphate acyltransferase compare
PP_3508 -1.7 -4.6 Protein CobW compare
PP_2356 -1.7 -9.9 putative Phytochrome family protein compare
PP_1654 -1.7 -3.7 cysteine synthase B compare
PP_1679 -1.6 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1664 -1.6 -4.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_1348 -1.6 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2000 -1.6 -1.5 amidophosphoribosyl transferase compare
PP_4546 -1.6 -3.5 ATP-dependent helicase HrpA compare
PP_1217 -1.6 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4338 -1.6 -6.9 Chemotaxis histidine kinase CheA compare
PP_4392 -1.6 -5.9 chemotaxis protein methyltransferase compare
PP_1378 -1.6 -4.7 alpha-ketoglutarate permease compare
PP_4829 -1.6 -3.7 putative precorrin-3B synthase compare
PP_5583 -1.5 -2.5 conserved protein of unknown function compare
PP_2354 -1.5 -8.4 Sensory box histidine kinase/response regulator compare
PP_0065 -1.5 -2.7 NAD-binding component of TrK potassium transporter compare
PP_0612 -1.4 -7.2 FAD-dependent glycine/D-amino acid oxidase compare
PP_4993 -1.4 -3.3 Glutathione synthetase compare
PP_0435 -1.4 -8.7 Peptidase, M23/M37 family compare
PP_2132 -1.4 -3.2 Universal stress protein compare
PP_1355 -1.4 -10.4 Muropeptide permease AmpG compare
PP_0406 -1.4 -4.7 Nucleotidyltransferase family protein compare
PP_0914 -1.3 -8.5 GGDEF domain protein compare
PP_1783 -1.3 -0.9 dTDP-glucose pyrophosphorylase compare
PP_4880 -1.3 -6.5 exoribonuclease R compare
PP_3790 -1.2 -7.1 diaminopimelate epimerase compare
PP_4120 -1.2 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_4591 -1.2 -2.8 Ribonuclease D compare
PP_5230 -1.2 -2.4 Tyrosine recombinase XerC compare
PP_3603 -1.2 -4.3 Transcriptional regulator, GntR family compare
PP_4684 -1.2 -6.1 conserved protein of unknown function with kinase-like domain compare
PP_5329 -1.2 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0434 -1.2 -7.7 Anhydro-N-acetylmuramic acid kinase compare
PP_1824 -1.2 -1.9 Smr domain protein compare
PP_1164 -1.2 -2.7 Transcriptional regulator, LysR family compare
PP_1906 -1.1 -3.8 ribosomal large subunit pseudouridine synthase C compare
PP_1764 -1.1 -3.8 Phosphoglycolate phosphatase 2 compare
PP_4481 -1.1 -4.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1826 -1.1 -1.6 Hydrolase, isochorismatase family compare
PP_3946 -1.1 -0.9 HTH-type transcriptional repressor NicR compare
PP_4984 -1.1 -6.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0513 -1.1 -1.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3821 -1.1 -3.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1994 -1.1 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_4008 -1.0 -5.2 ATP-dependent serine protease compare
PP_2145 -1.0 -4.0 beta-N-acetylglucosaminidase compare
PP_2302 -1.0 -3.6 DNA-binding, ATP-dependent protease compare
PP_4519 -1.0 -7.2 Agglutination protein compare
PP_4098 -1.0 -1.8 UvrABC system protein C compare
PP_2137 -1.0 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_1428 -1.0 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_4695 -1.0 -4.9 Sensory box histidine kinase compare
PP_5035 -1.0 -4.3 Histidine utilization repressor compare
PP_0872 -1.0 -3.8 Peptide chain release factor 3 compare
PP_3926 -1.0 -1.8 short-chain dehydrogenase compare
PP_0405 -1.0 -8.2 conserved protein of unknown function compare
PP_4379 -1.0 -4.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0997 -1.0 -5.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_5328 -1.0 -2.1 putative phosphate transport system permease protein compare
PP_0362 -1.0 -6.7 Biotin synthase compare
PP_4480 -1.0 -5.0 arginine N-succinyltransferase, subunit alpha compare
PP_1185 -1.0 -2.6 Outer membrane protein H1 compare
PP_0363 -0.9 -6.0 8-amino-7-oxononanoate synthase compare
PP_1291 -0.9 -5.3 PhoH family protein compare
PP_0547 -0.9 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3286 -0.9 -3.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4332 -0.9 -3.2 Chemotaxis protein CheW compare
PP_5310 -0.9 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_4471 -0.9 -2.6 Magnesium transporter compare
PP_2082 -0.9 -5.9 phosphoenolpyruvate synthetase compare
PP_1198 -0.9 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1326 -0.9 -2.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0313 -0.9 -2.7 putative electron transfer flavoprotein beta subunit compare
PP_1609 -0.9 -1.1 conserved protein of unknown function compare
PP_0167 -0.9 -7.4 Toxin secretion ATP-binding protein compare
PP_0165 -0.9 -7.0 GGDEF domain protein compare
PP_5705 -0.9 -1.3 protein of unknown function compare
PP_3662 -0.9 -4.9 conserved protein of unknown function compare
PP_0855 -0.9 -1.3 conserved protein of unknown function compare
PP_0168 -0.9 -7.7 putative surface adhesion protein compare
PP_0356 -0.9 -4.0 malate synthase G compare
PP_5267 -0.9 -1.9 putative cytochrome c5 compare
PP_5352 -0.9 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0166 -0.9 -5.9 HlyD family secretion protein compare
PP_4977 -0.9 -5.7 5,10-methylenetetrahydrofolate reductase compare
PP_3810 -0.8 -2.0 conserved protein of unknown function compare
PP_3365 -0.8 -1.3 Acetolactate synthase compare
PP_2403 -0.8 -1.3 Chemotaxis protein CheY compare
PP_0368 -0.8 -5.0 putative Acyl-CoA dehydrogenase compare
PP_4131 -0.8 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_0364 -0.8 -3.8 pimeloyl-[acp] methyl ester esterase compare
PP_1691 -0.8 -2.2 conserved protein of unknown function compare
PP_2951 -0.8 -2.4 Transcriptional regulator, TetR family compare
PP_1675 -0.8 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0832 -0.8 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas putida KT2440

For carbon source 4-Hydroxybenzoic Acid across organisms