Experiment set12IT046 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu6098 -4.7 -2.0 transcriptional regulator, HTH family compare
Atu0769 -3.3 -3.0 protoheme IX farnesyltransferase compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu2036 -3.1 -12.5 acetolactate synthase III, large subunit compare
Atu2728 -3.1 -4.7 beta (1-->2) glucan export ATP-binding protein compare
Atu1359 -3.1 -1.8 dnaK deletion suppressor protein compare
Atu3707 -2.9 -4.0 phosphoserine aminotransferase compare
Atu0041 -2.9 -3.5 glutamine amidotransferase compare
Atu0331 -2.7 -4.1 sigma-54 modulation protein compare
Atu3469 -2.6 -3.7 phosphoglyceromutase compare
Atu0039 -2.6 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu2057 -2.5 -4.1 DNA helicase II compare
Atu1588 -2.5 -9.2 homoserine dehydrogenase compare
Atu1030 -2.4 -1.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2684 -2.3 -2.8 hypothetical protein compare
Atu2040 -2.2 -5.9 phosphoserine phosphatase compare
Atu0031 -2.2 -2.0 PTS system, IIA component compare
Atu3908 -2.1 -10.8 GntR family transcriptional regulator compare
Atu0030 -2.1 -2.3 phosphocarrier protein HPr compare
Atu0162 -2.1 -4.0 biopolymer transport protein compare
Atu2067 -1.9 -1.6 hypothetical protein compare
Atu4317 -1.9 -4.1 TetR family transcriptional regulator compare
Atu0017 -1.9 -3.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0434 -1.9 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0678 -1.8 -7.8 histidyl-tRNA synthetase compare
Atu1417 -1.8 -9.1 enoyl-CoA hydratase compare
Atu0486 -1.8 -4.0 dihydroorotate dehydrogenase compare
Atu2207 -1.8 -3.2 two component sensor kinase compare
Atu0298 -1.8 -7.2 orotidine 5 compare
Atu0971 -1.7 -3.6 two component sensor kinase compare
Atu0399 -1.7 -6.0 dihydroorotase compare
Atu0361 -1.7 -4.0 transcriptional regulator compare
Atu4773 -1.7 -2.5 two component response regulator compare
Atu0161 -1.7 -10.6 biopolymer transport protein compare
Atu3730 -1.7 -1.6 hypothetical protein compare
Atu1810 -1.6 -1.6 hypothetical protein compare
Atu0040 -1.6 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0679 -1.6 -4.7 ATP phosphoribosyltransferase compare
Atu0043 -1.5 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu1874 -1.5 -2.8 RecA protein compare
Atu1446 -1.5 -2.6 two component response regulator compare
Atu4616 -1.5 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu0163 -1.5 -5.0 tonB protein compare
Atu3706 -1.5 -4.8 D-3-phosphoglycerate dehydrogenase compare
Atu0142 -1.4 -3.0 cytochrome o ubiquinol oxidase subunit II compare
Atu8167 -1.4 -7.6 putative transmembrane protein compare
Atu8191 -1.4 -2.3 hypothetical protein compare
Atu2238 -1.4 -7.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0537 -1.4 -5.8 histidinol dehydrogenase compare
Atu0894 -1.3 -2.2 ABC transporter, membrane spanning protein compare
Atu0038 -1.3 -5.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1364 -1.3 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0354 -1.3 -2.1 ferric uptake regulator compare
Atu8138 -1.3 -1.7 hypothetical protein compare
Atu0086 -1.3 -1.5 ribosome-binding factor A compare
Atu1308 -1.3 -5.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2832 -1.3 -3.4 tRNA modification GTPase compare
Atu1904 -1.3 -2.8 transcriptional regulator compare
Atu4711 -1.3 -6.5 two component sensor kinase compare
Atu2790 -1.2 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu2554 -1.2 -2.2 lysyl-tRNA synthetase compare
Atu2522 -1.2 -9.0 agrobacterium chromosomal virulence protein B compare
Atu1307 -1.2 -2.8 dihydroorotase compare
Atu0977 -1.2 -3.2 serine protease DO-like protease compare
Atu0400 -1.2 -2.8 orotate phosphoribosyltransferase compare
Atu1845 -1.2 -4.2 phosphoribosylformylglycinamidine synthase I compare
Atu1163 -1.2 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1205 -1.2 -7.1 threonine dehydratase compare
Atu0784 -1.2 -3.2 hypothetical protein compare
Atu0419 -1.2 -2.6 two component sensor kinase compare
Atu0401 -1.1 -4.8 fructokinase compare
Atu1705 -1.1 -3.1 SEC-independent protein translocase protein compare
Atu0703 -1.1 -2.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2584 -1.1 -4.6 hypothetical protein compare
Atu1619 -1.1 -2.0 protein-export membrane protein SECG compare
Atu1537 -1.1 -7.2 cytochrome-c oxidase, FixN chain compare
Atu1535 -1.1 -1.7 cytochrome c oxidase, FixQ chain compare
Atu0153 -1.1 -4.0 transcriptional regulator, Fur family compare
Atu0050 -1.1 -3.9 two component response regulator compare
Atu0026 -1.1 -1.1 hypothetical protein compare
Atu0099 -1.1 -4.7 prephenate dehydratase compare
Atu2237 -1.1 -3.1 cytochrome c1 compare
Atu4217 -1.1 -0.9 TetR family transcriptional regulator compare
Atu0101 -1.0 -3.0 cytochrome c compare
Atu1688 -1.0 -3.1 indole-3-glycerol-phosphate synthase compare
Atu2439 -1.0 -1.1 hypothetical protein compare
Atu3755 -1.0 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1529 -1.0 -4.7 nitrogen fixation protein FixH compare
Atu2591 -1.0 -4.7 glucosyltransferase compare
Atu1677 -1.0 -3.0 queuine tRNA-ribosyltransferase compare
Atu4346 -1.0 -4.3 hypothetical protein compare
Atu2831 -1.0 -3.7 glucose inhibited division protein A compare
Atu2183 -1.0 -5.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2582 -1.0 -4.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4618 -1.0 -6.3 dTDP-rhamnose-3,5-epimerase compare
Atu0340 -1.0 -1.9 SAM dependent methyltransferase compare
Atu2650 -1.0 -5.4 glycerol-3-phosphate dehydrogenase compare
Atu0976 -1.0 -2.6 cycL protein compare
Atu1750 -0.9 -3.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1528 -0.9 -5.6 nitrogen fixation protein FixI compare
Atu1099 -0.9 -5.1 hypothetical protein compare
Atu4149 -0.9 -5.4 UDP-glucose 6-dehydrogenase compare
Atu2289 -0.9 -7.0 anthranilate synthase component I and II compare
Atu3009 -0.9 -1.2 exopolysaccharide production protein compare
Atu1468 -0.9 -4.3 hypothetical protein compare
Atu1075 -0.9 -4.0 amidophosphoribosyltransferase compare
Atu0184 -0.9 -2.3 glucokinase compare
Atu4148 -0.9 -3.3 UDP-glucuronic acid epimerase compare
Atu1687 -0.9 -5.1 anthranilate phosphoribosyltransferase compare
Atu1074 -0.9 -4.4 NAD/NADP dependent oxidoreductase compare
Atu4614 -0.9 -4.7 glycosyltransferase compare
Atu8054 -0.9 -0.9 hypothetical protein compare
Atu3598 -0.9 -0.9 thiol:disulfide interchange protein compare
Atu0973 -0.9 -4.7 cycH protein compare
Atu1380 -0.9 -4.0 zinc metallopeptidase compare
Atu1602 -0.9 -3.6 transcriptional activator, Crp family compare
Atu1581 -0.9 -1.7 hypothetical protein compare
Atu2464 -0.9 -1.7 formyltetrahydrofolate deformylase compare
Atu0188 -0.9 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu2791 -0.8 -4.2 3-isopropylmalate dehydrogenase compare
Atu4897 -0.8 -1.3 hypothetical protein compare
Atu3311 -0.8 -6.8 phosphomannose isomerase compare
Atu0923 -0.8 -3.4 hypothetical protein compare
Atu3353 -0.8 -4.3 mannose-1-phosphate guanylyltransferase compare
Atu1530 -0.8 -5.9 nitrogen fixation protein FixG compare
Atu1534 -0.8 -4.3 cytochrome-c oxidase, FixP chain compare
Atu2616 -0.8 -3.6 hypothetical protein compare
Atu2640 -0.8 -2.7 hypothetical protein compare
Atu1076 -0.8 -1.8 colicin V production protein compare
Atu3690 -0.8 -4.2 iron (III ABC transporter permease dicitrate ABC transporter permease compare
Atu3739 -0.8 -1.4 phosphoglycerate kinase compare
Atu2264 -0.8 -4.5 2-isopropylmalate synthase compare
Atu0723 -0.8 -1.3 FAD dependent oxidoreductase compare
Atu3603 -0.8 -2.2 two component response regulator compare
Atu1646 -0.8 -3.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1902 -0.8 -2.7 transketolase compare
Atu3623 -0.8 -3.2 DnaJ family molecular chaperone compare
Atu3732 -0.7 -5.1 hemolysin compare
Atu1019 -0.7 -2.5 hypothetical protein compare
Atu1470 -0.7 -1.0 Camphor resistance protein compare
Atu1466 -0.7 -1.6 hypothetical protein compare
Atu1173 -0.7 -4.1 MFS permease compare
Atu2590 -0.7 -4.1 hypothetical protein compare
Atu2073 -0.7 -2.3 membrane protein compare
Atu2709 -0.7 -5.1 3-isopropylmalate dehydratase, large subunit compare
Atu0115 -0.7 -0.9 hypothetical protein compare
Atu0029 -0.7 -3.0 S-adenosylhomocysteine hydrolase compare
Atu2722 -0.7 -4.5 porin compare
Atu3219 -0.7 -4.7 dihydroxy-acid dehydratase compare
Atu2406 -0.7 -1.4 hypothetical protein compare
Atu0421 -0.7 -1.2 ABC transporter, membrane spanning protein compare
Atu1536 -0.7 -2.5 cytochrome C oxidase, FixO chain compare
Atu0876 -0.7 -1.1 superoxide dismutase compare
Atu2577 -0.7 -5.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1850 -0.7 -2.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2001 -0.7 -4.3 excinuclease ABC subunit B compare
Atu3754 -0.7 -2.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1644 -0.7 -1.6 hypothetical protein compare
Atu3689 -0.7 -5.0 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu0051 -0.7 -2.6 two component sensor kinase compare
Atu1513 -0.7 -2.8 ABC excinuclease subunit A compare
Atu4613 -0.7 -5.4 glycosyltransferase compare
Atu4615 -0.7 -3.9 glucose-1-phosphate thymidylyltransferase compare
Atu0189 -0.7 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu4617 -0.7 -4.6 dTDP-D-glucose-4,6-dehydratase compare
Atu3121 -0.7 -1.0 cold shock protein compare
Atu2592 -0.7 -3.1 hypothetical protein compare
Atu2083 -0.7 -2.6 DNA repair protein RecN compare
Atu2585 -0.7 -3.1 hypothetical protein compare
Atu2239 -0.7 -2.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3486 -0.7 -1.8 DeoR family transcriptional regulator compare
Atu3885 -0.7 -4.0 inositol monophosphatase compare
Atu5125 -0.7 -2.4 GntR family transcriptional regulator compare
Atu1110 -0.7 -2.2 cytosol aminopeptidase compare
Atu8055 -0.7 -1.9 hypothetical protein compare
Atu0895 -0.7 -1.8 ABC transporter, substrate binding protein compare
Atu1589 -0.7 -2.4 aminotransferase, class I compare
Atu1447 -0.7 -1.9 two component sensor kinase compare
Atu2808 -0.7 -3.6 cobyric acid synthase compare
Atu3733 -0.7 -1.6 hypothetical protein compare
Atu1140 -0.7 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4072 -0.7 -0.8 nodulation protein N compare
Atu6114 -0.7 -1.9 hypothetical protein compare
Atu4610 -0.6 -4.7 sugar nucleotide epimerase/dehydratase compare
Atu8151 -0.6 -1.5 hypothetical protein compare
Atu8012 -0.6 -0.8 hypothetical protein compare
Atu0062 -0.6 -3.4 transcriptional regulator, ROK family compare
Atu1138 -0.6 -3.6 protease VII precursor compare
Atu3485 -0.6 -3.1 short chain dehydrogenase compare
Atu1062 -0.6 -1.3 phosphatidylserine synthase compare
Atu0205 -0.6 -4.2 methylmalonate-semialdehyde dehydrogenase compare
Atu1141 -0.6 -1.9 Phosphoribosylglycinamide synthetase compare
Atu1339 -0.6 -1.8 ribonuclease E compare
Atu2274 -0.6 -2.8 cation efflux system protein compare
Atu4099 -0.6 -3.4 hypothetical protein compare
Atu8159 -0.6 -1.0 hypothetical protein compare
Atu1891 -0.6 -1.8 cobalamin biosynthesis protein compare
Atu2583 -0.6 -4.1 glycosyltransferase compare
Atu0346 -0.6 -1.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0647 -0.6 -2.3 phosphoribosylamine--glycine ligase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms