Experiment set12IT045 for Pseudomonas putida KT2440

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0966 -7.2 -8.6 Histidinol dehydrogenase compare
PP_4890 -7.2 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1988 -7.2 -8.6 3-isopropylmalate dehydrogenase compare
PP_3951 -7.1 -6.9 3-oxoadipate CoA-transferase subunit A compare
PP_1377 -7.1 -8.4 beta-ketoadipyl-CoA thiolase conserved
PP_3952 -7.1 -10.8 3-oxoadipate CoA-transferase subunit A conserved
PP_4679 -7.1 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -7.0 -9.6 O-succinylhomoserine sulfhydrylase compare
PP_1379 -7.0 -6.8 3-carboxy-cis,cis-muconate cycloisomerase conserved
PP_5098 -6.9 -6.8 methionine biosynthesis protein MetW compare
PP_0967 -6.9 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5015 -6.9 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1375 -6.9 -12.4 transcription regulatory protein (pca regulon) conserved
PP_0420 -6.8 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -6.7 -14.3 Ketol-acid reductoisomerase compare
PP_5097 -6.7 -12.8 homoserine O-acetyltransferase compare
PP_4680 -6.7 -12.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -6.5 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_3511 -6.4 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_4656 -6.3 -10.6 protocatechuate 3,4-dioxygenase beta chain conserved
PP_4724 -6.3 -4.3 Carbamoyl-phosphate synthase small chain compare
PP_1985 -6.2 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_5155 -6.2 -7.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0417 -6.1 -21.4 Anthranilate synthase component 1 compare
PP_1380 -6.1 -8.3 3-oxoadipate enol-lactonase 2 conserved
PP_0290 -6.1 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0164 -6.0 -7.2 conserved protein of unknown function compare
PP_2327 -5.9 -4.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5185 -5.9 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -5.8 -8.0 Indole-3-glycerol phosphate synthase compare
PP_4909 -5.8 -8.9 phosphoserine phosphatase compare
PP_4364 -5.8 -7.0 putative Anti-sigma F factor antagonist compare
PP_0787 -5.7 -5.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5128 -5.7 -10.6 Dihydroxy-acid dehydratase compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4655 -5.6 -11.5 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_1995 -5.6 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -5.5 -5.4 Acetylglutamate kinase compare
PP_5014 -5.5 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4723 -5.5 -10.6 Carbamoyl-phosphate synthase large chain compare
PP_1381 -5.3 -2.2 4-carboxymuconolactone decarboxylase compare
PP_1079 -5.3 -7.3 Ornithine carbamoyltransferase compare
PP_3999 -5.3 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0291 -5.3 -6.7 conserved protein of unknown function compare
PP_0421 -5.2 -7.8 Anthranilate phosphoribosyltransferase compare
PP_0083 -5.2 -3.6 tryptophan synthase beta chain compare
PP_0691 -5.0 -6.0 Glutamate 5-kinase compare
PP_0965 -4.9 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2370 -4.9 -4.8 conserved protein of unknown function compare
PP_0082 -4.9 -3.4 tryptophan synthase alpha chain compare
PP_1088 -4.8 -11.2 Argininosuccinate synthase compare
PP_0184 -4.8 -3.3 Argininosuccinate lyase compare
PP_0289 -4.5 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4782 -4.5 -7.5 Phosphomethylpyrimidine kinase compare
PP_2371 -4.4 -9.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4799 -4.4 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.3 -3.0 dihydroorotase-like protein compare
PP_4943 -4.3 -2.9 putative Glycosyl transferase compare
PP_2168 -4.3 -12.6 Transaldolase compare
PP_1025 -4.2 -11.0 2-isopropylmalate synthase compare
PP_1713 -4.1 -2.6 Transcriptional regulator PcaQ compare
PP_2388 -4.0 -3.7 Transporter, LysE family compare
PP_4696 -3.9 -2.7 Nitrogen regulation protein NR(I) compare
PP_2390 -3.9 -11.3 Transcriptional regulator, LysR family compare
PP_1376 -3.8 -10.6 4-hydroxybenzoate transporter compare
PP_0339 -3.7 -5.7 Pyruvate dehydrogenase E1 component compare
PP_5303 -3.6 -7.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0735 -3.6 -2.8 molybdopterin-synthase adenylyltransferase compare
PP_1233 -3.6 -7.1 sulfurtransferase compare
PP_2328 -3.0 -9.0 Phosphoadenosine phosphosulfate reductase compare
PP_0393 -3.0 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5104 -2.9 -8.1 thiazole synthase compare
PP_5095 -2.5 -2.7 pyrroline-5-carboxylate reductase compare
PP_1994 -2.5 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1733 -2.4 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3484 -2.4 -4.9 Response regulator receiver protein compare
PP_4004 -2.4 -4.3 DNA translocase FtsK compare
PP_3105 -2.4 -1.8 conserved membrane protein of unknown function compare
PP_4993 -2.3 -3.5 Glutathione synthetase compare
PP_1664 -2.3 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_0292 -2.3 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5217 -2.2 -13.7 Polyphosphate kinase compare
PP_3790 -2.2 -9.8 diaminopimelate epimerase compare
PP_4922 -2.2 -10.2 Phosphomethylpyrimidine synthase compare
PP_4917 -2.1 -4.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1468 -2.1 -1.9 Tyrosine recombinase XerD compare
PP_1216 -2.0 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1217 -2.0 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1734 -2.0 -2.9 Probable septum site-determining protein MinC compare
PP_4700 -1.9 -2.6 pantothenate synthetase compare
PP_0406 -1.9 -5.3 Nucleotidyltransferase family protein compare
PP_1912 -1.8 -5.4 Phosphate acyltransferase compare
PP_0001 -1.8 -1.6 probable chromosome-partitioning protein compare
PP_4695 -1.8 -7.1 Sensory box histidine kinase compare
PP_1378 -1.8 -4.9 alpha-ketoglutarate permease compare
PP_1348 -1.8 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0435 -1.7 -10.5 Peptidase, M23/M37 family compare
PP_2356 -1.6 -9.2 putative Phytochrome family protein compare
PP_5230 -1.6 -3.4 Tyrosine recombinase XerC compare
PP_4880 -1.5 -7.4 exoribonuclease R compare
PP_2336 -1.5 -3.0 aconitate hydratase 1 compare
PP_0368 -1.5 -7.1 putative Acyl-CoA dehydrogenase compare
PP_1764 -1.5 -6.5 Phosphoglycolate phosphatase 2 compare
PP_1366 -1.4 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_4392 -1.4 -5.1 chemotaxis protein methyltransferase compare
PP_0405 -1.4 -11.4 conserved protein of unknown function compare
PP_3662 -1.4 -6.5 conserved protein of unknown function compare
PP_2354 -1.4 -7.2 Sensory box histidine kinase/response regulator compare
PP_5216 -1.4 -2.2 exopolyphosphatase compare
PP_3821 -1.4 -4.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0914 -1.4 -6.5 GGDEF domain protein compare
PP_4480 -1.3 -7.4 arginine N-succinyltransferase, subunit alpha compare
PP_4902 -1.3 -1.9 Oligoribonuclease compare
PP_0593 -1.3 -1.3 putative ribosome-binding factor compare
PP_1355 -1.3 -10.0 Muropeptide permease AmpG compare
PP_2499 -1.3 -1.8 conserved protein of unknown function compare
PP_3590 -1.3 -5.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0612 -1.3 -6.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_0356 -1.2 -5.0 malate synthase G compare
PP_2031 -1.2 -2.2 conserved protein of unknown function compare
PP_3286 -1.2 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0434 -1.2 -7.2 Anhydro-N-acetylmuramic acid kinase compare
PP_1045 -1.2 -2.4 Type II secretion pathway protein XcpP compare
PP_2145 -1.2 -4.2 beta-N-acetylglucosaminidase compare
PP_1304 -1.2 -6.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2000 -1.2 -1.4 amidophosphoribosyl transferase compare
PP_5035 -1.2 -3.2 Histidine utilization repressor compare
PP_2793 -1.2 -2.3 Acyl-CoA dehydrogenase family protein compare
PP_5310 -1.2 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_1568 -1.2 -1.4 conserved protein of unknown function compare
PP_4699 -1.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0063 -1.1 -2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5328 -1.1 -3.0 putative phosphate transport system permease protein compare
PP_5486 -1.1 -1.7 conserved protein of unknown function compare
PP_4268 -1.1 -0.9 nucleoid-associated broad specificity regulator compare
PP_4697 -1.1 -3.1 poly(A) polymerase compare
PP_2429 -1.1 -2.5 putative Membrane protein compare
PP_1826 -1.1 -2.3 Hydrolase, isochorismatase family compare
PP_0989 -1.1 -3.2 glycine cleavage system H protein 1 compare
PP_5347 -1.1 -6.6 pyruvate carboxylase subunit A compare
PP_5350 -1.1 -2.3 Transcriptional regulator, RpiR family compare
PP_5352 -1.1 -5.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3903 -1.1 -2.0 conserved protein of unknown function compare
PP_4121 -1.1 -3.4 NADH-quinone oxidoreductase subunit C/D compare
PP_0997 -1.0 -5.4 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_1310 -1.0 -2.2 conserved hypothetical protein compare
PP_2568 -1.0 -1.2 Ring-cleaving dioxygenase compare
PP_3649 -1.0 -3.3 Transcriptional regulator, GntR family compare
PP_3829 -1.0 -3.1 Molybdenum transport system permease protein ModB compare
PP_5227 -1.0 -4.1 diaminopimelate decarboxylase compare
PP_1589 -1.0 -5.1 uridylyltransferase compare
PP_5008 -1.0 -1.4 Poly granule-associated protein compare
PP_0048 -1.0 -1.3 conserved protein of unknown function compare
PP_4131 -1.0 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_4517 -1.0 -1.1 conserved protein of unknown function compare
PP_0988 -1.0 -6.2 glycine dehydrogenase compare
PP_0986 -1.0 -3.4 aminomethyltransferase compare
PP_5346 -0.9 -4.6 pyruvate carboxylase subunit B compare
PP_2345 -0.9 -2.1 conserved exported protein of unknown function compare
PP_2903 -0.9 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2302 -0.9 -2.9 DNA-binding, ATP-dependent protease compare
PP_5475 -0.9 -1.5 conserved protein of unknown function compare
PP_0848 -0.9 -1.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4362 -0.9 -1.5 conserved protein of unknown function compare
PP_5176 -0.9 -2.0 conserved protein of unknown function compare
PP_5628 -0.9 -2.0 conserved protein of unknown function compare
PP_5146 -0.9 -4.1 RNA pyrophosphohydrolase compare
PP_4338 -0.9 -4.0 Chemotaxis histidine kinase CheA compare
PP_0195 -0.9 -1.7 conserved protein of unknown function compare
PP_1426 -0.9 -6.0 L-aspartate oxidase compare
PP_5422 -0.9 -2.1 hypothetical protein compare
PP_5114 -0.9 -0.9 putative adenine methyltransferase compare
PP_2378 -0.8 -1.7 Fe/S biogenesis protein NfuA compare
PP_1328 -0.8 -1.1 Protein MraZ compare
PP_4122 -0.8 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3810 -0.8 -1.3 conserved protein of unknown function compare
PP_1303 -0.8 -4.5 Sulfate adenylyltransferase subunit 2 compare
PP_1063 -0.8 -4.8 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_4124 -0.8 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_2082 -0.8 -5.6 phosphoenolpyruvate synthetase compare
PP_3866 -0.8 -2.3 conserved protein of unknown function compare
PP_1629 -0.8 -2.9 Protein RecA compare
PP_4340 -0.8 -2.4 response regulator for chemotactic signal transduction compare
PP_4481 -0.8 -3.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2088 -0.8 -2.2 RNA polymerase sigma factor SigX compare
PP_3102 -0.8 -2.7 conserved protein of unknown function compare
PP_4848 -0.8 -1.8 Curved DNA-binding protein compare
PP_3411 -0.8 -1.1 conserved protein of unknown function compare
PP_4126 -0.8 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_2132 -0.8 -2.1 Universal stress protein compare
PP_0872 -0.8 -3.1 Peptide chain release factor 3 compare
PP_2414 -0.8 -0.8 conserved exported protein of unknown function compare
PP_3198 -0.8 -2.3 Ferredoxin, 2Fe-2S compare
PP_3938 -0.8 -1.2 conserved protein of unknown function compare
PP_3726 -0.8 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_4375 -0.8 -4.5 flagellar chaperone, inhibits premature FliC assembly compare
PP_1387 -0.8 -2.6 Probable HTH-type transcriptional regulator TtgR compare
PP_4342 -0.8 -1.8 flagellar synthesis regulator, putative ATPase compare
PP_0758 -0.8 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Protocatechuic Acid in Pseudomonas putida KT2440

For carbon source Protocatechuic Acid across organisms