Experiment set12IT044 for Pseudomonas putida KT2440

Compare to:

Vanillic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -8.0 -5.5 Indole-3-glycerol phosphate synthase compare
PP_1379 -7.6 -5.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_3951 -7.3 -7.1 3-oxoadipate CoA-transferase subunit A compare
PP_1985 -7.3 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_2001 -7.2 -9.8 O-succinylhomoserine sulfhydrylase compare
PP_1375 -7.0 -12.6 transcription regulatory protein (pca regulon) compare
PP_0966 -6.9 -11.6 Histidinol dehydrogenase compare
PP_4656 -6.8 -10.5 protocatechuate 3,4-dioxygenase beta chain compare
PP_4890 -6.8 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0420 -6.8 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -6.7 -14.2 homoserine O-acetyltransferase compare
PP_4678 -6.6 -16.1 Ketol-acid reductoisomerase compare
PP_5014 -6.6 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1377 -6.6 -9.8 beta-ketoadipyl-CoA thiolase compare
PP_3952 -6.6 -12.1 3-oxoadipate CoA-transferase subunit A compare
PP_3511 -6.5 -10.9 Branched-chain-amino-acid aminotransferase compare
PP_0967 -6.5 -13.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5185 -6.4 -4.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3736 -6.4 -13.7 vanillate O-demethylase oxygenase subunit conserved
PP_4680 -6.4 -14.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -6.1 -7.2 Ornithine carbamoyltransferase compare
PP_4679 -6.1 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -6.1 -21.8 Anthranilate synthase component 1 compare
PP_5155 -6.1 -8.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5098 -6.0 -10.8 methionine biosynthesis protein MetW compare
PP_3737 -6.0 -14.4 vanillate O-demethylase oxidoreductase conserved
PP_0290 -5.9 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -5.9 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -5.8 -10.5 Carbamoyl-phosphate synthase large chain compare
PP_4909 -5.8 -9.7 phosphoserine phosphatase compare
PP_0164 -5.7 -9.6 conserved protein of unknown function compare
PP_2371 -5.7 -9.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5289 -5.7 -5.6 Acetylglutamate kinase compare
PP_4724 -5.7 -6.7 Carbamoyl-phosphate synthase small chain compare
PP_2327 -5.6 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1088 -5.5 -10.6 Argininosuccinate synthase compare
PP_1713 -5.5 -3.1 Transcriptional regulator PcaQ compare
PP_1988 -5.5 -12.1 3-isopropylmalate dehydrogenase compare
PP_1995 -5.5 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1381 -5.5 -2.2 4-carboxymuconolactone decarboxylase compare
PP_0083 -5.4 -3.7 tryptophan synthase beta chain compare
PP_1380 -5.3 -5.9 3-oxoadipate enol-lactonase 2 compare
PP_3999 -5.3 -8.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -5.2 -7.9 Anthranilate phosphoribosyltransferase compare
PP_4655 -5.1 -9.4 protocatechuate 3,4-dioxygenase alpha chain compare
PP_0082 -5.1 -3.5 tryptophan synthase alpha chain compare
PP_0184 -5.0 -3.5 Argininosuccinate lyase compare
PP_2168 -5.0 -13.6 Transaldolase compare
PP_1986 -5.0 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_5128 -4.8 -7.5 Dihydroxy-acid dehydratase compare
PP_0965 -4.8 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4799 -4.6 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5095 -4.6 -3.2 pyrroline-5-carboxylate reductase compare
PP_1654 -4.6 -3.2 cysteine synthase B compare
PP_0292 -4.5 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_0691 -4.5 -6.5 Glutamate 5-kinase compare
PP_0787 -4.2 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0289 -4.2 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1616 -4.2 -11.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_1231 -4.1 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0339 -3.9 -6.0 Pyruvate dehydrogenase E1 component compare
PP_4696 -3.8 -4.5 Nitrogen regulation protein NR(I) compare
PP_2388 -3.6 -5.6 Transporter, LysE family compare
PP_5015 -3.6 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4993 -3.4 -2.3 Glutathione synthetase compare
PP_4364 -3.3 -4.9 putative Anti-sigma F factor antagonist compare
PP_3590 -3.3 -7.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0001 -3.2 -2.8 probable chromosome-partitioning protein compare
PP_4782 -3.1 -6.2 Phosphomethylpyrimidine kinase compare
PP_2390 -2.9 -10.0 Transcriptional regulator, LysR family compare
PP_1025 -2.9 -8.0 2-isopropylmalate synthase compare
PP_2402 -2.7 -4.2 putative Sensor histidine kinase compare
PP_1233 -2.7 -6.6 sulfurtransferase compare
PP_0393 -2.7 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4700 -2.7 -2.6 pantothenate synthetase compare
PP_0735 -2.7 -3.0 molybdopterin-synthase adenylyltransferase compare
PP_0406 -2.6 -6.1 Nucleotidyltransferase family protein compare
PP_5104 -2.6 -7.2 thiazole synthase compare
PP_2328 -2.6 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_4129 -2.5 -4.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5303 -2.5 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1493 -2.4 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2370 -2.4 -3.7 conserved protein of unknown function compare
PP_1826 -2.4 -3.2 Hydrolase, isochorismatase family compare
PP_1216 -2.4 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3946 -2.2 -1.5 HTH-type transcriptional repressor NicR compare
PP_1355 -2.2 -17.4 Muropeptide permease AmpG compare
PP_4058 -2.2 -10.3 1,4-alpha-glucan branching enzyme compare
PP_1428 -2.2 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_5216 -2.2 -2.9 exopolyphosphatase compare
PP_0434 -2.1 -11.3 Anhydro-N-acetylmuramic acid kinase compare
PP_0405 -2.1 -16.0 conserved protein of unknown function compare
PP_0117 -2.1 -7.8 Zn(2+) ABC transporter - permease subunit compare
PP_4910 -2.0 -2.5 conserved protein of unknown function compare
PP_4943 -2.0 -3.0 putative Glycosyl transferase compare
PP_1615 -2.0 -7.7 Transcriptional regulator, LysR family conserved
PP_4922 -2.0 -11.2 Phosphomethylpyrimidine synthase compare
PP_3105 -2.0 -2.5 conserved membrane protein of unknown function compare
PP_2087 -2.0 -3.2 CmpX protein compare
PP_4004 -2.0 -3.8 DNA translocase FtsK compare
PP_1994 -2.0 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_0368 -1.9 -9.1 putative Acyl-CoA dehydrogenase compare
PP_2145 -1.9 -6.2 beta-N-acetylglucosaminidase compare
PP_0291 -1.9 -1.7 conserved protein of unknown function compare
PP_0833 -1.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_0435 -1.9 -9.2 Peptidase, M23/M37 family compare
PP_3508 -1.9 -3.0 Protein CobW compare
PP_4695 -1.8 -6.5 Sensory box histidine kinase compare
PP_0120 -1.7 -8.7 putative zinc ABC transporter compare
PP_4902 -1.7 -2.8 Oligoribonuclease compare
PP_2356 -1.7 -9.1 putative Phytochrome family protein compare
PP_4098 -1.7 -3.0 UvrABC system protein C compare
PP_0356 -1.6 -6.8 malate synthase G compare
PP_1629 -1.6 -4.3 Protein RecA compare
PP_3484 -1.6 -4.7 Response regulator receiver protein compare
PP_0914 -1.6 -8.6 GGDEF domain protein compare
PP_1378 -1.6 -4.7 alpha-ketoglutarate permease compare
PP_3286 -1.6 -5.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3102 -1.6 -4.0 conserved protein of unknown function compare
PP_0846 -1.5 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_1215 -1.5 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1733 -1.5 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0065 -1.5 -2.9 NAD-binding component of TrK potassium transporter compare
PP_3649 -1.5 -3.7 Transcriptional regulator, GntR family compare
PP_5227 -1.5 -5.2 diaminopimelate decarboxylase compare
PP_3248 -1.5 -2.1 Dyp-type peroxidase family protein compare
PP_2433 -1.5 -2.2 conserved protein of unknown function compare
PP_3662 -1.4 -8.0 conserved protein of unknown function compare
PP_0989 -1.4 -4.1 glycine cleavage system H protein 1 compare
PP_2354 -1.4 -7.8 Sensory box histidine kinase/response regulator compare
PP_0612 -1.4 -7.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_5146 -1.4 -7.4 RNA pyrophosphohydrolase compare
PP_4124 -1.4 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_4519 -1.4 -9.9 Agglutination protein compare
PP_1764 -1.4 -5.7 Phosphoglycolate phosphatase 2 compare
PP_4122 -1.4 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0167 -1.4 -10.6 Toxin secretion ATP-binding protein compare
PP_0848 -1.4 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0165 -1.4 -10.1 GGDEF domain protein compare
PP_3603 -1.3 -4.7 Transcriptional regulator, GntR family compare
PP_0937 -1.3 -4.2 endoribonuclease G (RNAse G) compare
PP_5217 -1.3 -9.3 Polyphosphate kinase compare
PP_0168 -1.3 -11.0 putative surface adhesion protein compare
PP_4699 -1.3 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5085 -1.3 -5.2 malic enzyme B compare
PP_5035 -1.3 -6.0 Histidine utilization repressor compare
PP_0166 -1.3 -9.0 HlyD family secretion protein compare
PP_2999 -1.2 -1.8 Glyoxalase family protein compare
PP_4895 -1.2 -1.4 tRNA dimethylallyltransferase compare
PP_0789 -1.2 -5.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5017 -1.2 -1.4 Sec-independent protein translocase protein TatB compare
PP_5604 -1.2 -1.9 putative subtilisin-like serine protease compare
PP_1348 -1.2 -4.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2136 -1.2 -2.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0118 -1.2 -4.8 zinc import ATP-binding protein compare
PP_1426 -1.1 -8.3 L-aspartate oxidase compare
PP_0513 -1.1 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3506 -1.1 -3.4 Magnesium chelatase, subunit ChII compare
PP_1617 -1.1 -4.6 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_2336 -1.1 -2.6 aconitate hydratase 1 compare
PP_1367 -1.1 -4.8 formyltetrahydrofolate hydrolase compare
PP_0988 -1.1 -7.6 glycine dehydrogenase compare
PP_1609 -1.1 -1.3 conserved protein of unknown function compare
PP_0127 -1.1 -2.7 Thiol:disulfide interchange protein compare
PP_1387 -1.1 -4.0 Probable HTH-type transcriptional regulator TtgR compare
PP_0986 -1.1 -4.5 aminomethyltransferase compare
PP_4338 -1.1 -5.7 Chemotaxis histidine kinase CheA compare
PP_1185 -1.0 -3.2 Outer membrane protein H1 compare
PP_4367 -1.0 -4.7 Flagellar assembly protein FliH compare
PP_1783 -1.0 -1.1 dTDP-glucose pyrophosphorylase compare
PP_5230 -1.0 -1.8 Tyrosine recombinase XerC compare
PP_0879 -1.0 -4.4 dipeptide ABC transporter - putative ATP binding subunit compare
PP_3493 -1.0 -5.6 Transcriptional regulator, LysR family compare
PP_4622 -1.0 -3.8 Hmg transcriptional repressor compare
PP_5090 -1.0 -1.9 putative cell division protein compare
PP_5583 -1.0 -2.0 conserved protein of unknown function compare
PP_4131 -1.0 -3.6 NADH-quinone oxidoreductase subunit N compare
PP_4988 -0.9 -5.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1679 -0.9 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3494 -0.9 -4.0 conserved exported protein of unknown function compare
PP_5198 -0.9 -1.8 conserved protein of unknown function compare
PP_0997 -0.9 -6.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_4726 -0.9 -1.5 Chaperone protein DnaJ compare
PP_0881 -0.9 -3.9 dipeptide ABC transporter - putative membrane subunit compare
PP_0119 -0.9 -2.7 putative zinc uptake regulation protein ZUR compare
PP_2550 -0.9 -2.0 putative transcriptional regulatory protein compare
PP_2307 -0.9 -1.2 conserved protein of unknown function compare
PP_4332 -0.9 -3.7 Chemotaxis protein CheW compare
PP_4832 -0.9 -2.2 Precorrin-6x reductase compare
PP_4340 -0.9 -3.1 response regulator for chemotactic signal transduction compare
PP_4830 -0.9 -3.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_4337 -0.9 -4.6 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2081 -0.9 -3.6 putative phosphoenolpyruvate synthase regulatory protein compare
PP_2414 -0.9 -1.4 conserved exported protein of unknown function compare
PP_4109 -0.9 -1.5 conserved protein of unknown function compare
PP_5352 -0.9 -5.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1293 -0.9 -1.5 molybdopterin synthase small subunit compare
PP_5338 -0.9 -1.5 aspartate ammonia-lyase compare
PP_5310 -0.9 -2.7 junction-specific ATP-dependent DNA helicase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas putida KT2440

For carbon source Vanillic Acid across organisms