Experiment set12IT044 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu1030 -4.9 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0043 -3.7 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu1470 -3.6 -2.1 Camphor resistance protein compare
Atu4773 -3.4 -3.6 two component response regulator compare
Atu0331 -3.4 -4.8 sigma-54 modulation protein compare
Atu3763 -3.1 -2.1 hypothetical protein compare
Atu0141 -2.9 -2.7 cytochrome O ubiquinol oxidase subunit I compare
Atu4217 -2.7 -2.6 TetR family transcriptional regulator compare
Atu2125 -2.5 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0399 -2.4 -7.7 dihydroorotase compare
Atu0163 -2.4 -7.9 tonB protein compare
Atu0162 -2.4 -5.3 biopolymer transport protein compare
Atu2036 -2.3 -12.1 acetolactate synthase III, large subunit compare
Atu2554 -2.2 -3.1 lysyl-tRNA synthetase compare
Atu3469 -2.1 -3.0 phosphoglyceromutase compare
Atu3908 -2.1 -10.1 GntR family transcriptional regulator compare
Atu2728 -2.0 -4.5 beta (1-->2) glucan export ATP-binding protein compare
Atu0971 -2.0 -3.5 two component sensor kinase compare
Atu1810 -2.0 -1.6 hypothetical protein compare
Atu1705 -1.9 -4.7 SEC-independent protein translocase protein compare
Atu2207 -1.9 -4.4 two component sensor kinase compare
Atu3598 -1.9 -3.0 thiol:disulfide interchange protein compare
Atu0161 -1.9 -8.2 biopolymer transport protein compare
Atu1602 -1.8 -7.0 transcriptional activator, Crp family compare
Atu0030 -1.8 -2.1 phosphocarrier protein HPr compare
Atu1528 -1.8 -10.4 nitrogen fixation protein FixI compare
Atu3688 -1.8 -4.4 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2237 -1.8 -5.1 cytochrome c1 compare
Atu1566 -1.8 -1.8 hypothetical protein compare
Atu0486 -1.7 -4.9 dihydroorotate dehydrogenase compare
Atu0976 -1.7 -2.6 cycL protein compare
Atu1588 -1.7 -7.0 homoserine dehydrogenase compare
Atu2238 -1.7 -7.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0894 -1.7 -3.0 ABC transporter, membrane spanning protein compare
Atu2433 -1.7 -1.8 hypothetical protein compare
Atu0101 -1.7 -3.9 cytochrome c compare
Atu1529 -1.7 -5.3 nitrogen fixation protein FixH compare
Atu1359 -1.7 -1.4 dnaK deletion suppressor protein compare
Atu4317 -1.7 -3.5 TetR family transcriptional regulator compare
Atu1173 -1.6 -8.7 MFS permease compare
Atu0298 -1.6 -6.8 orotidine 5 compare
Atu1308 -1.6 -4.5 aspartate carbamoyl transferase catalytic subunit compare
Atu0703 -1.6 -3.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu6098 -1.6 -1.0 transcriptional regulator, HTH family compare
Atu0038 -1.6 -5.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1537 -1.6 -8.0 cytochrome-c oxidase, FixN chain compare
Atu1417 -1.5 -5.7 enoyl-CoA hydratase compare
Atu0031 -1.5 -1.7 PTS system, IIA component compare
Atu1028 -1.5 -2.9 hypothetical protein compare
Atu1530 -1.5 -9.5 nitrogen fixation protein FixG compare
Atu1074 -1.5 -8.3 NAD/NADP dependent oxidoreductase compare
Atu2073 -1.5 -3.9 membrane protein compare
Atu1534 -1.4 -4.3 cytochrome-c oxidase, FixP chain compare
Atu1535 -1.4 -2.6 cytochrome c oxidase, FixQ chain compare
Atu2239 -1.4 -3.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu8138 -1.4 -2.2 hypothetical protein compare
Atu0434 -1.4 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0537 -1.4 -6.6 histidinol dehydrogenase compare
Atu1536 -1.3 -6.2 cytochrome C oxidase, FixO chain compare
Atu0050 -1.3 -4.6 two component response regulator compare
Atu0679 -1.3 -3.2 ATP phosphoribosyltransferase compare
Atu2684 -1.3 -1.5 hypothetical protein compare
Atu0153 -1.3 -3.8 transcriptional regulator, Fur family compare
Atu2650 -1.3 -7.0 glycerol-3-phosphate dehydrogenase compare
Atu2585 -1.3 -5.4 hypothetical protein compare
Atu8167 -1.3 -7.4 putative transmembrane protein compare
Atu0973 -1.2 -5.3 cycH protein compare
Atu0678 -1.2 -5.0 histidyl-tRNA synthetase compare
Atu1468 -1.2 -6.2 hypothetical protein compare
Atu1646 -1.2 -5.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1527 -1.2 -4.4 nitrogen fixation protein FixS compare
Atu3754 -1.2 -5.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0769 -1.2 -1.6 protoheme IX farnesyltransferase compare
Atu3689 -1.2 -5.8 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu3690 -1.2 -6.1 iron (III ABC transporter permease dicitrate ABC transporter permease compare
Atu0354 -1.2 -1.3 ferric uptake regulator compare
Atu0422 -1.2 -1.8 ABC transporter, membrane spanning protein compare
Atu1845 -1.2 -2.8 phosphoribosylformylglycinamidine synthase I compare
Atu3739 -1.2 -3.0 phosphoglycerate kinase compare
Atu0401 -1.1 -6.1 fructokinase compare
Atu0400 -1.1 -2.5 orotate phosphoribosyltransferase compare
Atu0421 -1.1 -1.6 ABC transporter, membrane spanning protein compare
Atu3707 -1.1 -2.7 phosphoserine aminotransferase compare
Atu0039 -1.1 -2.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu3755 -1.0 -3.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1307 -1.0 -3.3 dihydroorotase compare
Atu4711 -1.0 -4.7 two component sensor kinase compare
Atu0784 -1.0 -2.1 hypothetical protein compare
Atu0017 -1.0 -2.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0659 -1.0 -4.9 NTP pyrophosphohydrolase, MutT family compare
Atu1739 -1.0 -3.2 permease compare
Atu3353 -1.0 -6.1 mannose-1-phosphate guanylyltransferase compare
Atu0723 -1.0 -1.3 FAD dependent oxidoreductase compare
Atu0361 -1.0 -2.0 transcriptional regulator compare
Atu2522 -1.0 -6.6 agrobacterium chromosomal virulence protein B compare
Atu1364 -1.0 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1644 -1.0 -2.9 hypothetical protein compare
Atu4346 -1.0 -4.5 hypothetical protein compare
Atu0184 -1.0 -1.5 glucokinase compare
Atu3706 -0.9 -4.2 D-3-phosphoglycerate dehydrogenase compare
Atu4148 -0.9 -3.5 UDP-glucuronic acid epimerase compare
Atu2113 -0.9 -2.2 N-acetylmuramoyl-L-alanine amidase compare
Atu4161 -0.9 -1.5 hypothetical protein compare
Atu1750 -0.9 -2.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1062 -0.9 -1.7 phosphatidylserine synthase compare
Atu1902 -0.9 -4.1 transketolase compare
Atu3485 -0.9 -6.3 short chain dehydrogenase compare
Atu8161 -0.9 -1.6 hypothetical protein compare
Atu2439 -0.9 -1.4 hypothetical protein compare
Atu1647 -0.9 -4.0 ABC transporter, membrane spanning protein compare
Atu3608 -0.9 -3.6 hypothetical protein compare
Atu3311 -0.9 -7.0 phosphomannose isomerase compare
Atu1163 -0.9 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1205 -0.9 -5.4 threonine dehydratase compare
Atu0977 -0.8 -3.3 serine protease DO-like protease compare
Atu0269 -0.8 -2.2 exodeoxyribonuclease VII large subunit compare
Atu8191 -0.8 -1.5 hypothetical protein compare
Atu1141 -0.8 -4.3 Phosphoribosylglycinamide synthetase compare
Atu4618 -0.8 -6.1 dTDP-rhamnose-3,5-epimerase compare
Atu0876 -0.8 -1.3 superoxide dismutase compare
Atu0051 -0.8 -2.6 two component sensor kinase compare
Atu1380 -0.8 -3.2 zinc metallopeptidase compare
Atu1904 -0.8 -3.2 transcriptional regulator compare
Atu0029 -0.8 -3.0 S-adenosylhomocysteine hydrolase compare
Atu2831 -0.8 -3.0 glucose inhibited division protein A compare
Atu4072 -0.8 -1.2 nodulation protein N compare
Atu1677 -0.8 -2.2 queuine tRNA-ribosyltransferase compare
Atu3120 -0.8 -1.6 hypothetical protein compare
Atu3162 -0.8 -4.7 LacI family transcriptional regulator compare
Atu0152 -0.8 -1.3 hypothetical protein compare
Atu1513 -0.8 -3.1 ABC excinuclease subunit A compare
Atu1874 -0.8 -1.8 RecA protein compare
Atu5123 -0.8 -6.0 acetolactate synthase catalytic subunit compare
Atu4149 -0.8 -5.2 UDP-glucose 6-dehydrogenase compare
Atu1619 -0.8 -2.2 protein-export membrane protein SECG compare
Atu0062 -0.8 -3.0 transcriptional regulator, ROK family compare
Atu1687 -0.8 -4.1 anthranilate phosphoribosyltransferase compare
Atu5075 -0.7 -3.4 GntR family transcriptional regulator compare
Atu0660 -0.7 -3.5 hydrolase compare
Atu0923 -0.7 -2.8 hypothetical protein compare
Atu3732 -0.7 -5.2 hemolysin compare
Atu4232 -0.7 -2.7 GntR family transcriptional regulator compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu2040 -0.7 -3.0 phosphoserine phosphatase compare
Atu2832 -0.7 -2.0 tRNA modification GTPase compare
Atu5164 -0.7 -0.7 type IV secretion protein AvhB3 compare
Atu2083 -0.7 -1.3 DNA repair protein RecN compare
Atu0190 -0.7 -3.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4514 -0.7 -3.7 RpiR family transcriptional regulator compare
Atu1075 -0.7 -2.8 amidophosphoribosyltransferase compare
Atu2217 -0.7 -2.0 hypothetical protein compare
Atu0099 -0.7 -4.7 prephenate dehydratase compare
Atu6114 -0.7 -1.0 hypothetical protein compare
Atu0895 -0.7 -1.7 ABC transporter, substrate binding protein compare
Atu1830 -0.7 -1.5 bacterioferritin comigratory protein compare
Atu3518 -0.7 -4.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3744 -0.7 -4.9 ABC transporter permease compare
Atu2801 -0.7 -2.7 precorrin-2 C20 methyltransferase compare
Atu3691 -0.7 -4.3 iron (III) dicitrate ABC transporter ATPase compare
Atu1645 -0.7 -3.2 ABC transporter, substrate binding protein compare
Atu0346 -0.7 -2.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4446 -0.7 -4.8 hypothetical protein compare
Atu4617 -0.7 -4.6 dTDP-D-glucose-4,6-dehydratase compare
Atu2200 -0.7 -1.8 cold shock protein compare
Atu2289 -0.7 -5.0 anthranilate synthase component I and II compare
Atu4614 -0.7 -3.7 glycosyltransferase compare
Atu3572 -0.6 -3.3 transcriptional regulator compare
Atu1140 -0.6 -2.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5464 -0.6 -4.1 IclR family transcriptional regulator compare
Atu0205 -0.6 -4.0 methylmalonate-semialdehyde dehydrogenase compare
Atu1447 -0.6 -1.0 two component sensor kinase compare
Atu2583 -0.6 -4.5 glycosyltransferase compare
Atu3757 -0.6 -1.3 hypothetical protein compare
Atu0041 -0.6 -0.8 glutamine amidotransferase compare
Atu2592 -0.6 -2.3 hypothetical protein compare
Atu4053 -0.6 -1.2 succinoglycan biosynthesis protein compare
Atu2640 -0.6 -1.9 hypothetical protein compare
Atu8082 -0.6 -1.0 hypothetical protein compare
Atu5125 -0.6 -1.9 GntR family transcriptional regulator compare
Atu0368 -0.6 -2.5 tRNA pseudouridine synthase I compare
Atu2798 -0.6 -2.1 precorrin-6y methyltransferase compare
Atu1844 -0.6 -1.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1774 -0.6 -2.7 ABC transporter, substrate binding protein (peptide) compare
Atu0340 -0.6 -1.2 SAM dependent methyltransferase compare
Atu2184 -0.6 -2.1 transcriptional regulator, AsnC family compare
Atu5057 -0.6 -1.5 hypothetical protein compare
Atu0956 -0.6 -1.0 phage prohead protease compare
Atu1688 -0.6 -2.4 indole-3-glycerol-phosphate synthase compare
Atu0353 -0.6 -3.2 acetyltransferase compare
Atu8176 -0.6 -1.3 hypothetical protein compare
Atu4532 -0.6 -3.7 shikimate 5-dehydrogenase compare
Atu1511 -0.6 -1.7 hypothetical protein compare
Atu5540 -0.6 -0.7 hypothetical protein compare
Atu1463 -0.6 -2.4 glycine cleavage system component H compare
Atu8099 -0.6 -1.6 hypothetical protein compare
Atu0386 -0.6 -1.3 hypothetical protein compare
Atu8087 -0.6 -0.8 putative peptidoglycan binding protein compare
Atu2812 -0.6 -1.7 hypothetical protein compare
Atu0413 -0.6 -1.4 stress induced protein compare
Atu3692 -0.6 -2.9 sigma factor compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms