Experiment set12IT043 for Escherichia coli BW25113

Compare to:

LB with Trimethoprim 0.0025 mM

Genes with specific phenotypes:

  gene name fitness t score description  
b3472 b3472 -3.1 -11.8 orf, hypothetical protein (VIMSS) compare
b3423 glpR -3.1 -15.0 DNA-binding transcriptional repressor (NCBI) compare
b2037 rfbX -2.7 -6.1 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b4374 yjjG -2.4 -7.8 nucleotidase (NCBI) compare
b2039 rfbA -2.4 -13.3 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b2393 nupC -2.3 -6.3 nucleoside (except guanosine) transporter (NCBI) compare
b2299 yfcD -2.0 -5.6 predicted NUDIX hydrolase (NCBI) compare
b1097 yceG -1.9 -5.1 predicted aminodeoxychorismate lyase (NCBI) compare
b3920 yiiQ -1.9 -7.6 hypothetical protein (NCBI) compare
b3529 yhjK -1.8 -12.7 predicted diguanylate cyclase (RefSeq) compare
b3363 ppiA -1.4 -7.5 peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI) compare
b2744 surE -1.3 -5.9 acid phosphatase (NCBI) compare
b2593 yfiH -1.3 -7.8 hypothetical protein (NCBI) compare
b3570 bax -1.1 -7.2 hypothetical protein (NCBI) compare
b4382 deoA -1.1 -7.5 thymidine phosphorylase (NCBI) compare
b4138 dcuA -1.1 -7.7 C4-dicarboxylate antiporter (NCBI) conserved
b0411 tsx -1.0 -6.5 nucleoside channel, receptor of phage T6 and colicin K (NCBI) compare
b2042 galF +1.1 6.5 predicted subunit with GalU (NCBI) compare
b0448 mdlA +1.3 10.7 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b2796 sdaC +1.4 11.8 predicted serine transporter (NCBI) compare
b2749 ygbE +1.4 8.9 conserved inner membrane protein (NCBI) compare
b3166 truB +1.4 8.7 tRNA pseudouridine synthase B (NCBI) compare
b2038 rfbC +1.4 8.9 dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) compare
b1606 folM +1.4 9.7 short chain dehydrogenase (NCBI) compare
b0122 yacC +1.5 6.3 orf, hypothetical protein (VIMSS) compare
b0449 mdlB +1.6 11.9 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b1766 sppA +1.6 10.7 protease IV (signal peptide peptidase) (NCBI) conserved
b3785 wzzE +1.7 12.4 putative transport protein (VIMSS) compare
b4391 yjjK +1.7 12.6 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b2066 udk +1.8 9.3 uridine/cytidine kinase (VIMSS) compare
b1629 rsxC +1.8 12.1 electron transport complex protein RnfC (NCBI) compare
b2214 yojL +1.8 12.6 predicted thiamine biosynthesis lipoprotein (NCBI) compare
b2218 rcsC +1.9 13.8 hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) compare
b2041 rfbB +1.9 15.3 dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI) compare
b2765 ygcM +2.0 7.7 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) compare
b1632 rsxE +2.0 11.0 NADH-ubiquinone oxidoreductase (NCBI) compare
b2570 rseC +2.0 13.5 RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) compare
b2216 rcsD +2.1 10.0 phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) compare
b2040 rfbD +2.1 17.5 dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) compare
b3673 emrD +2.5 20.7 2-module integral membrane pump; multidrug resistance (VIMSS) compare
b3934 cytR +2.9 25.3 DNA-binding transcriptional dual regulator (NCBI) compare


Specific phenotypes for stress Trimethoprim across organisms